Wall clock time and date at job start Tue Mar 31 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 119.99820 * 2 1 4 4 H 1.48510 * 109.47151 * 239.99923 * 3 2 1 5 5 H 1.48500 * 109.47538 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46955 * 120.00443 * 3 2 1 7 7 C 1.37874 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47420 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00143 * 274.99943 * 10 9 7 12 12 C 1.52999 * 109.47018 * 59.99596 * 11 10 9 13 13 C 1.53005 * 109.47005 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46983 * 60.00300 * 13 12 11 15 15 C 1.52999 * 109.46974 * 300.00095 * 14 13 12 16 16 C 1.52996 * 109.47439 * 59.99957 * 15 14 13 17 17 S 1.65608 * 119.99953 * 94.99478 * 10 9 7 18 18 O 1.42095 * 104.27841 * 206.07470 * 17 10 9 19 19 O 1.42102 * 104.27658 * 333.93185 * 17 10 9 20 20 C 1.81406 * 104.44741 * 90.00111 * 17 10 9 21 21 C 1.52991 * 109.46937 * 179.97438 * 20 17 10 22 22 O 1.42904 * 109.47076 * 180.02562 * 21 20 17 23 23 C 1.35900 * 117.00157 * 180.02562 * 22 21 20 24 24 C 1.38738 * 120.05372 * 359.72373 * 23 22 21 25 25 C 1.38147 * 119.93944 * 179.74436 * 24 23 22 26 26 C 1.38260 * 120.05694 * 0.50486 * 25 24 23 27 27 C 1.38262 * 120.11327 * 359.77363 * 26 25 24 28 28 C 1.38142 * 120.05589 * 359.96971 * 27 26 25 29 29 H 0.97002 * 119.99870 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47272 * 59.99385 * 9 7 2 31 31 H 1.09006 * 109.46504 * 299.99750 * 9 7 2 32 32 H 1.08998 * 109.47000 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.47451 * 299.99988 * 12 11 10 34 34 H 1.09001 * 109.46934 * 60.00305 * 12 11 10 35 35 H 1.08998 * 109.47039 * 300.00280 * 13 12 11 36 36 H 1.08999 * 109.46922 * 179.97438 * 13 12 11 37 37 H 1.08996 * 109.47062 * 180.02562 * 14 13 12 38 38 H 1.08999 * 109.46880 * 59.99427 * 14 13 12 39 39 H 1.09005 * 109.46977 * 299.99760 * 15 14 13 40 40 H 1.08996 * 109.47333 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47493 * 179.97438 * 16 15 14 42 42 H 1.08999 * 109.47595 * 59.99945 * 16 15 14 43 43 H 1.09000 * 109.47167 * 300.00580 * 20 17 10 44 44 H 1.09000 * 109.46895 * 59.99901 * 20 17 10 45 45 H 1.09008 * 109.47545 * 300.00011 * 21 20 17 46 46 H 1.09000 * 109.47377 * 60.00235 * 21 20 17 47 47 H 1.08000 * 120.03051 * 359.97438 * 24 23 22 48 48 H 1.08003 * 119.96796 * 180.27641 * 25 24 23 49 49 H 1.08003 * 119.94530 * 179.74495 * 26 25 24 50 50 H 1.08001 * 119.97564 * 179.97438 * 27 26 25 51 51 H 1.07999 * 120.03272 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7631 -4.0977 -1.2634 12 6 3.5219 -2.9626 -1.9538 13 6 4.1073 -3.4693 -3.2735 14 6 2.9747 -3.9520 -4.1818 15 6 2.2159 -5.0870 -3.4913 16 6 1.6305 -4.5804 -2.1717 17 16 2.6461 -4.3232 1.4293 18 8 3.9352 -4.8610 1.1683 19 8 2.4611 -3.3025 2.4005 20 6 1.4371 -5.6546 1.6668 21 6 1.7438 -6.3956 2.9697 22 8 0.7918 -7.4447 3.1565 23 6 0.9231 -8.2051 4.2752 24 6 1.9508 -7.9504 5.1717 25 6 2.0789 -8.7214 6.3108 26 6 1.1905 -9.7528 6.5525 27 6 0.1689 -10.0124 5.6576 28 6 0.0332 -9.2409 4.5198 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5566 0.8904 32 1 3.4465 -4.9232 -1.0649 33 1 2.8387 -2.1368 -2.1522 34 1 4.3290 -2.6190 -1.3068 35 1 4.7906 -4.2949 -3.0746 36 1 4.6475 -2.6605 -3.7655 37 1 3.3918 -4.3134 -5.1217 38 1 2.2914 -3.1263 -4.3805 39 1 2.8992 -5.9127 -3.2925 40 1 1.4093 -5.4313 -4.1386 41 1 1.0894 -5.3889 -1.6800 42 1 0.9472 -3.7547 -2.3704 43 1 0.4344 -5.2301 1.7171 44 1 1.4950 -6.3514 0.8306 45 1 2.7465 -6.8202 2.9189 46 1 1.6862 -5.6990 3.8061 47 1 2.6477 -7.1477 4.9812 48 1 2.8761 -8.5207 7.0113 49 1 1.2948 -10.3571 7.4415 50 1 -0.5236 -10.8189 5.8484 51 1 -0.7646 -9.4443 3.8208 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002026199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:55 Heat of formation + Delta-G solvation = -98.114715 kcal Electronic energy + Delta-G solvation = -31939.305298 eV Core-core repulsion = 27737.525821 eV Total energy + Delta-G solvation = -4201.779477 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.165 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.28997 -38.55097 -37.68025 -36.64366 -35.45294 -34.74428 -32.45005 -32.41013 -31.14086 -30.37738 -29.67793 -28.99620 -26.78042 -24.58121 -23.00097 -22.68970 -22.13592 -21.96269 -21.39118 -19.18219 -18.77503 -18.12969 -17.10993 -16.66927 -16.47172 -16.26618 -16.00590 -15.66405 -15.55479 -14.83833 -14.55546 -14.51227 -13.95870 -13.85814 -13.78379 -13.64283 -13.58715 -13.35311 -12.81225 -12.64659 -12.34513 -12.19570 -12.08523 -11.89729 -11.84047 -11.78331 -11.58889 -11.42519 -11.17368 -11.08917 -11.07046 -10.99206 -10.76072 -10.72306 -10.68573 -10.53519 -10.27942 -10.19150 -9.93304 -9.64809 -9.42172 -9.24361 -8.43266 -8.42582 -8.07546 -6.05673 -4.07362 0.59458 1.10083 1.21788 2.90109 3.27528 3.33786 3.37726 3.42798 3.56245 4.22619 4.38563 4.42647 4.47014 4.62649 4.69679 4.79552 4.84876 4.93760 5.03425 5.10682 5.14321 5.16267 5.20984 5.28803 5.38908 5.40271 5.44680 5.62722 5.67195 5.75175 5.76425 5.87696 5.90690 5.92852 5.96305 6.07981 6.12980 6.17197 6.29215 6.29263 6.40352 6.50637 6.53006 6.60063 6.67682 6.82640 7.15169 7.18302 7.21753 7.36760 7.59252 7.92174 8.21137 8.93786 9.56228 11.03077 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.010595 B = 0.002739 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.227057 B =10219.715925 C =11774.723871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.254 3.746 10 N -0.974 5.974 11 C 0.159 3.841 12 C -0.122 4.122 13 C -0.119 4.119 14 C -0.120 4.120 15 C -0.114 4.114 16 C -0.133 4.133 17 S 2.607 3.393 18 O -0.966 6.966 19 O -0.928 6.928 20 C -0.653 4.653 21 C 0.076 3.924 22 O -0.305 6.305 23 C 0.129 3.871 24 C -0.211 4.211 25 C -0.079 4.079 26 C -0.162 4.162 27 C -0.082 4.082 28 C -0.153 4.153 29 H 0.263 0.737 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.142 0.858 44 H 0.136 0.864 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.130 0.870 48 H 0.126 0.874 49 H 0.123 0.877 50 H 0.128 0.872 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.943 -17.887 2.582 18.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.133 3.867 10 N -0.813 5.813 11 C 0.052 3.948 12 C -0.161 4.161 13 C -0.157 4.157 14 C -0.157 4.157 15 C -0.153 4.153 16 C -0.172 4.172 17 S 2.696 3.304 18 O -0.956 6.956 19 O -0.918 6.918 20 C -0.776 4.776 21 C 0.000 4.000 22 O -0.218 6.218 23 C 0.083 3.917 24 C -0.230 4.230 25 C -0.097 4.097 26 C -0.180 4.180 27 C -0.100 4.100 28 C -0.172 4.172 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.160 0.840 44 H 0.154 0.846 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.147 0.853 48 H 0.144 0.856 49 H 0.141 0.859 50 H 0.146 0.854 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.310 -17.542 3.011 17.948 hybrid contribution -0.134 0.696 -0.106 0.716 sum 2.177 -16.846 2.905 17.233 Atomic orbital electron populations 1.69906 1.05936 1.27101 1.50729 1.24904 0.94833 0.99101 0.95181 0.86636 0.79618 0.82898 0.78782 1.20189 1.21338 1.20079 1.21431 0.93663 0.90235 1.50383 0.91874 1.19107 0.87057 0.82215 0.98360 1.57539 1.59821 1.44562 1.19405 1.20707 0.93969 0.96514 0.83608 1.21903 1.00438 0.98940 0.94798 1.21568 0.97428 1.00316 0.96373 1.21545 0.97920 0.98495 0.97756 1.21486 0.99391 0.97947 0.96450 1.21972 0.98701 1.01198 0.95356 1.05182 0.75277 0.75110 0.74879 1.93538 1.35522 1.81763 1.84805 1.93655 1.86138 1.51834 1.60200 1.31248 1.22494 1.19618 1.04276 1.22332 0.92459 0.88943 0.96267 1.86140 1.52817 1.43512 1.39351 1.19119 0.94602 0.91592 0.86349 1.21381 1.00564 1.03939 0.97122 1.20981 0.98392 0.94292 0.96011 1.21070 0.96821 0.99551 1.00575 1.20971 0.97540 0.98364 0.93126 1.20471 1.00731 0.96228 0.99740 0.92727 0.94172 0.94544 0.89957 0.88797 0.91846 0.92565 0.92188 0.92719 0.91667 0.92340 0.92249 0.92483 0.90231 0.83958 0.84598 0.90690 0.90418 0.85251 0.85627 0.85920 0.85371 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.34 13.29 55.43 0.74 -24.61 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -13.64 7.53 -34.44 -0.26 -13.90 16 8 H 0.06 1.68 7.07 -52.49 -0.37 1.30 16 9 C 0.25 5.90 4.58 -5.19 -0.02 5.88 16 10 N -0.97 -18.71 2.66 -108.57 -0.29 -18.99 16 11 C 0.16 2.65 2.46 -67.93 -0.17 2.49 16 12 C -0.12 -2.12 4.22 -26.73 -0.11 -2.23 16 13 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 14 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 15 C -0.11 -1.39 5.92 -26.73 -0.16 -1.54 16 16 C -0.13 -1.92 5.17 -26.73 -0.14 -2.06 16 17 S 2.61 47.21 5.36 -107.50 -0.58 46.63 16 18 O -0.97 -18.45 16.57 -57.54 -0.95 -19.40 16 19 O -0.93 -20.62 16.99 -57.54 -0.98 -21.60 16 20 C -0.65 -9.03 6.55 37.15 0.24 -8.79 16 21 C 0.08 1.02 4.75 37.15 0.18 1.19 16 22 O -0.30 -4.21 10.14 -19.43 -0.20 -4.41 16 23 C 0.13 1.63 6.69 -39.21 -0.26 1.37 16 24 C -0.21 -2.42 9.04 -39.43 -0.36 -2.78 16 25 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 26 C -0.16 -1.42 10.04 -39.56 -0.40 -1.82 16 27 C -0.08 -0.74 10.04 -39.61 -0.40 -1.13 16 28 C -0.15 -1.67 9.99 -39.43 -0.39 -2.06 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.04 0.94 6.45 -51.93 -0.33 0.61 16 31 H 0.04 0.90 7.61 -51.93 -0.40 0.51 16 32 H 0.08 1.29 6.87 -51.93 -0.36 0.93 16 33 H 0.09 1.86 6.65 -51.93 -0.35 1.51 16 34 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.29 6.69 -51.93 -0.35 0.94 16 43 H 0.14 1.91 8.14 -51.92 -0.42 1.49 16 44 H 0.14 1.60 8.14 -51.92 -0.42 1.18 16 45 H 0.07 0.88 7.65 -51.92 -0.40 0.48 16 46 H 0.08 0.98 7.67 -51.93 -0.40 0.58 16 47 H 0.13 1.35 6.30 -52.49 -0.33 1.02 16 48 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 49 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 50 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 51 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 414.90 15.07 6.25 6.25 Total: -1.00 -32.27 414.90 -12.40 -44.68 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -8.32 Total: 3.51 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: -3.06 Total: -28.41 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.45 Total: -43.60 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -2.13 Total: -45.41 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 47.21 SS G_CDS: -0.58 Total: 46.63 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.27 -12.40 -44.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002026199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.439 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds