Wall clock time and date at job start Tue Mar 31 2020 05:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00459 * 2 1 4 4 H 1.48498 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47189 * 300.00557 * 3 2 1 6 6 H 1.48506 * 109.46886 * 60.00098 * 3 2 1 7 7 C 1.37880 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00017 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00079 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47092 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00323 * 84.16016 * 10 9 7 12 12 O 1.21564 * 119.99824 * 44.24625 * 11 10 9 13 13 C 1.47788 * 119.99919 * 224.24437 * 11 10 9 14 14 C 1.39633 * 120.12882 * 329.50112 * 13 11 10 15 15 C 1.37875 * 119.86657 * 180.02562 * 14 13 11 16 16 C 1.38535 * 120.13039 * 359.97324 * 15 14 13 17 17 Cl 1.73601 * 119.86976 * 180.02562 * 16 15 14 18 18 C 1.38494 * 120.26300 * 0.03051 * 16 15 14 19 19 N 1.48021 * 119.93124 * 179.97438 * 18 16 15 20 20 O 1.21801 * 119.99842 * 179.97438 * 19 18 16 21 21 O 1.21796 * 120.00055 * 359.97438 * 19 18 16 22 22 C 1.37918 * 120.13074 * 359.71332 * 18 16 15 23 23 C 1.46502 * 119.99431 * 264.16159 * 10 9 7 24 24 C 1.53004 * 109.46811 * 211.99173 * 23 10 9 25 25 C 1.53005 * 109.46877 * 180.02562 * 24 23 10 26 26 C 1.53002 * 109.47190 * 60.00083 * 25 24 23 27 27 C 1.53008 * 109.46956 * 300.00073 * 26 25 24 28 28 C 1.52994 * 109.47367 * 59.99592 * 27 26 25 29 29 H 0.97001 * 119.99720 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.47807 * 59.99450 * 9 7 2 31 31 H 1.09001 * 109.46776 * 299.99584 * 9 7 2 32 32 H 1.08002 * 120.06528 * 0.02562 * 14 13 11 33 33 H 1.07993 * 119.93607 * 180.02562 * 15 14 13 34 34 H 1.08003 * 120.06158 * 180.28464 * 22 18 16 35 35 H 1.09005 * 109.47174 * 331.98702 * 23 10 9 36 36 H 1.08996 * 109.46858 * 299.99908 * 24 23 10 37 37 H 1.08994 * 109.47068 * 60.00152 * 24 23 10 38 38 H 1.09006 * 109.47089 * 300.00089 * 25 24 23 39 39 H 1.09000 * 109.46905 * 180.02562 * 25 24 23 40 40 H 1.08996 * 109.47297 * 180.02562 * 26 25 24 41 41 H 1.08996 * 109.47380 * 59.99601 * 26 25 24 42 42 H 1.09005 * 109.46699 * 300.00141 * 27 26 25 43 43 H 1.08997 * 109.46633 * 180.02562 * 27 26 25 44 44 H 1.09000 * 109.47041 * 179.97438 * 28 27 26 45 45 H 1.09006 * 109.46728 * 60.00037 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2029 -3.6128 -0.0015 11 6 2.7302 -4.0484 1.1598 12 8 2.0169 -4.1985 2.1327 13 6 4.1754 -4.3436 1.2504 14 6 4.8705 -4.7946 0.1265 15 6 6.2186 -5.0688 0.2173 16 6 6.8837 -4.8972 1.4203 17 17 8.5814 -5.2439 1.5268 18 6 6.1996 -4.4502 2.5385 19 7 6.9175 -4.2700 3.8204 20 8 6.3171 -3.8765 4.8044 21 8 8.1084 -4.5152 3.8912 22 6 4.8521 -4.1676 2.4586 23 6 2.5817 -4.2527 -1.2637 24 6 2.8709 -5.7349 -1.0173 25 6 3.2671 -6.4031 -2.3354 26 6 4.5195 -5.7252 -2.8947 27 6 4.2303 -4.2431 -3.1410 28 6 3.8340 -3.5748 -1.8230 29 1 -0.4850 0.8401 0.0004 30 1 0.6245 -2.5563 -0.8918 31 1 0.6240 -2.5574 0.8881 32 1 4.3530 -4.9283 -0.8120 33 1 6.7574 -5.4173 -0.6514 34 1 4.3207 -3.8147 3.3301 35 1 1.7652 -4.1560 -1.9795 36 1 3.6872 -5.8316 -0.3015 37 1 1.9788 -6.2177 -0.6185 38 1 2.4510 -6.3063 -3.0516 39 1 3.4727 -7.4591 -2.1599 40 1 4.8015 -6.2010 -3.8339 41 1 5.3355 -5.8219 -2.1786 42 1 3.4142 -4.1463 -3.8571 43 1 5.1224 -3.7603 -3.5398 44 1 3.6284 -2.5189 -1.9984 45 1 4.6501 -3.6716 -1.1068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002156851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:43 Heat of formation + Delta-G solvation = 71.915793 kcal Electronic energy + Delta-G solvation = -32484.073385 eV Core-core repulsion = 28113.675751 eV Total energy + Delta-G solvation = -4370.397634 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.38449 -41.80712 -38.73613 -38.34908 -36.96114 -36.45916 -34.82394 -32.99998 -32.33572 -31.52097 -30.95230 -29.74111 -27.28855 -26.79438 -24.62407 -23.19098 -22.81559 -22.73190 -22.41156 -20.67396 -19.90805 -18.66464 -18.31876 -17.57793 -16.88346 -16.73101 -16.66348 -16.20062 -15.54162 -15.30832 -14.85947 -14.72765 -14.61189 -14.29328 -14.06735 -13.87877 -13.64671 -13.14794 -12.65173 -12.38460 -12.36610 -12.31880 -12.24339 -11.99616 -11.95480 -11.49964 -11.41707 -11.36566 -11.31847 -11.20541 -11.07669 -10.87759 -10.63343 -10.56766 -10.44139 -10.15215 -9.78642 -9.65813 -9.60675 -9.51947 -9.24563 -8.61305 -7.79263 -6.21913 -4.29483 -0.37380 0.35826 1.15070 1.18519 1.54991 2.45357 3.15641 3.17893 3.27316 3.29792 3.51866 3.95892 4.19414 4.27494 4.31756 4.50039 4.55832 4.56713 4.64512 4.80843 4.91265 5.04659 5.05363 5.12234 5.21095 5.27122 5.28863 5.34420 5.42326 5.50854 5.60497 5.67855 5.83885 5.88375 5.90344 5.93216 5.97717 6.11812 6.25270 6.31753 6.45988 6.84991 7.19715 7.38156 7.64373 7.74794 8.00816 8.07773 8.34861 8.76867 9.37509 10.85155 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.008222 B = 0.004276 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3404.553331 B = 6545.854803 C = 8254.136127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.060 0.940 9 C 0.253 3.747 10 N -0.623 5.623 11 C 0.586 3.414 12 O -0.505 6.505 13 C -0.129 4.129 14 C -0.096 4.096 15 C -0.136 4.136 16 C 0.032 3.968 17 Cl -0.011 7.011 18 C -0.059 4.059 19 N 0.032 4.968 20 O -0.160 6.160 21 O -0.143 6.143 22 C 0.010 3.990 23 C 0.151 3.849 24 C -0.202 4.202 25 C -0.116 4.116 26 C -0.136 4.136 27 C -0.121 4.121 28 C -0.186 4.186 29 H 0.265 0.735 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.247 0.753 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.946 -13.600 -7.153 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.078 0.922 9 C 0.135 3.865 10 N -0.356 5.356 11 C 0.373 3.627 12 O -0.379 6.379 13 C -0.134 4.134 14 C -0.112 4.112 15 C -0.155 4.155 16 C 0.004 3.996 17 Cl 0.019 6.981 18 C -0.143 4.143 19 N 0.552 4.448 20 O -0.374 6.374 21 O -0.362 6.362 22 C -0.010 4.010 23 C 0.046 3.954 24 C -0.239 4.239 25 C -0.154 4.154 26 C -0.174 4.174 27 C -0.159 4.159 28 C -0.224 4.224 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.262 0.738 33 H 0.177 0.823 34 H 0.187 0.813 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.123 -13.638 -7.197 19.014 hybrid contribution 0.859 1.229 0.349 1.539 sum 11.982 -12.409 -6.848 18.559 Atomic orbital electron populations 1.69932 1.05992 1.27220 1.49491 1.24925 0.94854 0.99216 0.94739 0.86494 0.79998 0.83421 0.77881 1.19778 1.20749 1.20702 1.21531 0.93436 0.90557 1.52293 0.92227 1.19369 0.87034 0.81067 0.98989 1.47792 1.47780 1.36628 1.03423 1.17634 0.85095 0.76033 0.83976 1.90745 1.61289 1.47051 1.38806 1.20683 0.97300 1.02733 0.92655 1.24759 0.94308 0.89086 1.03050 1.21181 0.94557 1.03661 0.96084 1.21009 0.88101 0.97175 0.93361 1.98458 1.09207 1.92158 1.98266 1.20658 0.93501 1.15236 0.84889 1.43346 1.01060 0.98285 1.02147 1.94580 1.69076 1.47737 1.25987 1.94581 0.97510 1.53032 1.91074 1.21098 0.90025 0.90488 0.99355 1.21038 0.97642 0.89779 0.86897 1.23356 1.04490 0.96138 0.99875 1.21522 0.98307 0.99317 0.96250 1.21789 0.97749 0.96333 1.01489 1.21596 1.02093 0.94619 0.97622 1.23122 0.98786 1.03222 0.97239 0.92512 0.94409 0.94036 0.73811 0.82311 0.81252 0.88388 0.87748 0.90160 0.90937 0.91265 0.91083 0.91983 0.91053 0.91363 0.88631 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.54 -13.81 9.32 -34.44 -0.32 -14.13 16 8 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 9 C 0.25 5.99 5.43 -5.19 -0.03 5.96 16 10 N -0.62 -11.74 2.42 -168.60 -0.41 -12.14 16 11 C 0.59 11.25 5.87 -12.36 -0.07 11.18 16 12 O -0.50 -11.35 16.91 5.31 0.09 -11.26 16 13 C -0.13 -2.01 5.56 -104.97 -0.58 -2.60 16 14 C -0.10 -1.16 3.63 -39.19 -0.14 -1.30 16 15 C -0.14 -1.40 9.44 -39.60 -0.37 -1.78 16 16 C 0.03 0.40 6.33 -39.38 -0.25 0.15 16 17 Cl -0.01 -0.12 25.91 -51.86 -1.34 -1.46 16 18 C -0.06 -0.86 6.85 -79.97 -0.55 -1.41 16 19 N 0.03 0.51 4.45 33.95 0.15 0.66 16 20 O -0.16 -2.73 18.44 -29.46 -0.54 -3.28 16 21 O -0.14 -2.25 16.00 -29.46 -0.47 -2.72 16 22 C 0.01 0.16 9.10 -39.20 -0.36 -0.20 16 23 C 0.15 2.11 2.47 -67.93 -0.17 1.94 16 24 C -0.20 -2.24 4.32 -26.73 -0.12 -2.35 16 25 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 26 C -0.14 -0.98 5.66 -26.73 -0.15 -1.13 16 27 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 28 C -0.19 -2.33 5.10 -26.74 -0.14 -2.47 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 30 H 0.04 0.90 7.81 -51.93 -0.41 0.50 16 31 H 0.04 1.12 7.62 -51.93 -0.40 0.73 16 32 H 0.25 2.65 0.09 -78.58 -0.01 2.64 16 33 H 0.16 1.09 7.28 -52.49 -0.38 0.71 16 34 H 0.17 2.76 7.48 -52.48 -0.39 2.37 16 35 H 0.10 1.36 7.83 -51.93 -0.41 0.95 16 36 H 0.11 1.17 3.09 -92.94 -0.29 0.89 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.40 5.79 -51.93 -0.30 0.10 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.10 1.46 8.12 -51.93 -0.42 1.04 16 45 H 0.09 1.12 3.64 -78.78 -0.29 0.83 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -29.98 368.38 -10.29 -40.27 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.37 Total: 1.61 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -3.66 Total: -8.79 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.48 Total: -35.49 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.92 Total: -17.26 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.34 Total: -1.46 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.98 -10.29 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002156851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.182 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds