Wall clock time and date at job start Tue Mar 31 2020 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38796 * 119.76028 * 2 1 4 4 C 1.37773 * 120.65820 * 180.02562 * 3 2 1 5 5 C 1.39202 * 119.83274 * 0.02562 * 4 3 2 6 6 C 1.40580 * 119.23354 * 359.97438 * 5 4 3 7 7 C 1.36665 * 119.76578 * 180.02562 * 2 1 3 8 8 C 1.47002 * 106.32384 * 180.02562 * 6 5 4 9 9 C 1.47981 * 126.75724 * 179.97438 * 8 6 5 10 10 C 1.39545 * 120.14299 * 293.90929 * 9 8 6 11 11 C 1.37958 * 119.85899 * 180.27475 * 10 9 8 12 12 C 1.38358 * 120.14130 * 359.47300 * 11 10 9 13 13 C 1.38363 * 120.28510 * 0.29741 * 12 11 10 14 14 C 1.37966 * 120.13701 * 359.95861 * 13 12 11 15 15 C 1.37893 * 106.48607 * 0.24206 * 8 6 5 16 16 C 1.47641 * 125.40905 * 179.75804 * 15 8 6 17 17 C 1.39670 * 120.15346 * 124.93847 * 16 15 8 18 18 C 1.37937 * 119.83945 * 179.72327 * 17 16 15 19 19 C 1.38366 * 120.15801 * 0.55837 * 18 17 16 20 20 C 1.38379 * 120.30875 * 359.72191 * 19 18 17 21 21 C 1.37929 * 120.15612 * 359.97438 * 20 19 18 22 22 N 1.37378 * 109.18771 * 359.60766 * 15 8 6 23 23 C 1.46499 * 124.92379 * 180.14276 * 22 15 8 24 24 C 1.50694 * 109.46964 * 270.28020 * 23 22 15 25 25 H 1.08001 * 120.00043 * 0.02562 * 24 23 22 26 26 C 1.37879 * 120.00126 * 179.97438 * 24 23 22 27 27 N 1.31513 * 120.00347 * 180.02562 * 26 24 23 28 28 Si 1.86804 * 119.99706 * 0.02562 * 26 24 23 29 29 H 1.48504 * 109.47096 * 89.99963 * 28 26 24 30 30 H 1.48500 * 109.46790 * 209.99662 * 28 26 24 31 31 H 1.48498 * 109.47051 * 329.99568 * 28 26 24 32 32 H 1.08994 * 109.47388 * 269.97596 * 1 2 3 33 33 H 1.09004 * 109.47146 * 29.98775 * 1 2 3 34 34 H 1.09002 * 109.46620 * 149.97769 * 1 2 3 35 35 H 1.07998 * 119.67486 * 0.03605 * 3 2 1 36 36 H 1.07998 * 120.08206 * 180.02562 * 4 3 2 37 37 H 1.07997 * 120.09924 * 0.02562 * 7 2 1 38 38 H 1.08005 * 120.06704 * 0.02765 * 10 9 8 39 39 H 1.07997 * 119.93256 * 179.75074 * 11 10 9 40 40 H 1.08002 * 119.86127 * 180.27625 * 12 11 10 41 41 H 1.07992 * 119.93215 * 179.97438 * 13 12 11 42 42 H 1.08000 * 120.06707 * 180.02562 * 14 13 12 43 43 H 1.07999 * 120.07726 * 359.97438 * 17 16 15 44 44 H 1.08002 * 119.91736 * 180.27779 * 18 17 16 45 45 H 1.08002 * 119.84864 * 179.69497 * 19 18 17 46 46 H 1.07999 * 119.92040 * 180.02562 * 20 19 18 47 47 H 1.07998 * 120.08035 * 180.02562 * 21 20 19 48 48 H 1.08996 * 109.47305 * 30.28306 * 23 22 15 49 49 H 1.09000 * 109.47134 * 150.28439 * 23 22 15 50 50 H 0.96996 * 120.00552 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2049 0.0000 4 6 3.5735 1.2265 -0.0005 5 6 4.2849 0.0299 -0.0016 6 6 3.5812 -1.1871 -0.0016 7 6 2.1855 -1.1863 -0.0005 8 6 4.5957 -2.2509 -0.0022 9 6 4.3489 -3.7100 -0.0019 10 6 3.7505 -4.3192 1.1018 11 6 3.5283 -5.6808 1.0981 12 6 3.8874 -6.4404 -0.0011 13 6 4.4767 -5.8417 -1.1006 14 6 4.7091 -4.4818 -1.1072 15 6 5.8227 -1.6216 0.0030 16 6 7.1330 -2.3019 0.0095 17 6 8.0789 -2.0119 -0.9764 18 6 9.3032 -2.6471 -0.9609 19 6 9.5909 -3.5781 0.0215 20 6 8.6563 -3.8745 0.9979 21 6 7.4303 -3.2424 0.9983 22 7 5.6323 -0.2611 -0.0021 23 6 6.7056 0.7360 -0.0018 24 6 7.0737 1.0774 1.4190 25 1 6.5597 0.5992 2.2398 26 6 8.0672 1.9995 1.6713 27 7 8.3887 2.2972 2.9113 28 14 8.9566 2.8261 0.2516 29 1 8.2397 4.0713 -0.1239 30 1 10.3441 3.1587 0.6633 31 1 8.9930 1.9054 -0.9129 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8901 -0.5137 34 1 -0.3633 -0.8898 -0.5142 35 1 1.6468 2.1348 0.0006 36 1 4.1002 2.1694 -0.0001 37 1 1.6433 -2.1203 -0.0014 38 1 3.4657 -3.7266 1.9586 39 1 3.0690 -6.1541 1.9533 40 1 3.7072 -7.5053 -0.0009 41 1 4.7550 -6.4401 -1.9554 42 1 5.1687 -4.0156 -1.9662 43 1 7.8537 -1.2891 -1.7467 44 1 10.0372 -2.4205 -1.7200 45 1 10.5493 -4.0760 0.0260 46 1 8.8876 -4.6019 1.7620 47 1 6.7020 -3.4744 1.7612 48 1 7.5775 0.3314 -0.5158 49 1 6.3661 1.6355 -0.5154 50 1 9.0874 2.9462 3.0888 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002294597.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:04 Heat of formation + Delta-G solvation = 99.396021 kcal Electronic energy + Delta-G solvation = -32555.853754 eV Core-core repulsion = 28670.337048 eV Total energy + Delta-G solvation = -3885.516706 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.163 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.90127 -38.72013 -38.55455 -36.95164 -33.72791 -32.53402 -31.83002 -30.78809 -30.66972 -30.57943 -30.25060 -28.70379 -26.76763 -25.72830 -23.27983 -23.02998 -22.29204 -22.22313 -21.63887 -20.87212 -19.95977 -18.98740 -17.16646 -17.00261 -16.60879 -15.96760 -15.72174 -14.97869 -14.89006 -14.77017 -14.42818 -14.33074 -14.22026 -13.73595 -13.55380 -13.43866 -13.23856 -13.17218 -13.02994 -12.93684 -12.75289 -12.60844 -12.31471 -12.18106 -12.02819 -11.89100 -11.35328 -11.27989 -11.02137 -10.98638 -10.95460 -10.86210 -10.73817 -10.63419 -10.30545 -10.05753 -9.68744 -9.04406 -8.82852 -8.75533 -8.64490 -8.58301 -8.45273 -7.38704 -6.86946 -6.29980 -4.33022 1.22300 1.52285 1.61019 1.70942 1.78950 2.12034 3.05181 3.09712 3.16016 3.18212 3.54556 3.98262 4.17007 4.19159 4.35021 4.87120 4.97577 5.07657 5.10812 5.13725 5.16180 5.19970 5.20515 5.28487 5.32077 5.35092 5.53736 5.60172 5.69171 5.70515 5.74232 5.80595 5.82110 5.85391 5.97241 6.05297 6.08332 6.21425 6.22111 6.24723 6.29348 6.36230 6.40081 6.41461 6.53772 6.66205 6.67370 6.68261 6.74466 6.80043 6.86415 6.94008 7.10749 7.16784 7.23070 7.25301 7.29721 7.38282 7.83679 7.89411 8.27268 8.75064 9.25870 10.82496 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.006865 B = 0.004921 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4077.730906 B = 5688.354250 C = 8867.214032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.106 4.106 5 C 0.106 3.894 6 C -0.088 4.088 7 C -0.077 4.077 8 C -0.163 4.163 9 C 0.022 3.978 10 C -0.110 4.110 11 C -0.121 4.121 12 C -0.132 4.132 13 C -0.121 4.121 14 C -0.107 4.107 15 C 0.154 3.846 16 C -0.012 4.012 17 C -0.099 4.099 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.080 4.080 22 N -0.435 5.435 23 C 0.204 3.796 24 C -0.539 4.539 25 H 0.081 0.919 26 C 0.082 3.918 27 N -0.884 5.884 28 Si 0.867 3.133 29 H -0.271 1.271 30 H -0.279 1.279 31 H -0.265 1.265 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.047 0.953 49 H 0.038 0.962 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.197 -12.847 -7.906 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.123 4.123 3 C -0.132 4.132 4 C -0.127 4.127 5 C -0.002 4.002 6 C -0.092 4.092 7 C -0.096 4.096 8 C -0.171 4.171 9 C 0.021 3.979 10 C -0.128 4.128 11 C -0.139 4.139 12 C -0.151 4.151 13 C -0.139 4.139 14 C -0.125 4.125 15 C 0.042 3.958 16 C -0.013 4.013 17 C -0.117 4.117 18 C -0.140 4.140 19 C -0.136 4.136 20 C -0.138 4.138 21 C -0.099 4.099 22 N -0.110 5.110 23 C 0.085 3.915 24 C -0.577 4.577 25 H 0.099 0.901 26 C -0.122 4.122 27 N -0.521 5.521 28 Si 0.694 3.306 29 H -0.196 1.196 30 H -0.204 1.204 31 H -0.189 1.189 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.065 0.935 49 H 0.056 0.944 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.773 -12.435 -7.789 16.161 hybrid contribution 0.777 0.818 -0.436 1.210 sum -5.996 -11.616 -8.225 15.445 Atomic orbital electron populations 1.20648 0.91854 1.01863 1.01561 1.19224 0.95360 0.92913 1.04802 1.20550 0.92806 0.97133 1.02664 1.20146 0.93477 0.95614 1.03423 1.18167 0.83045 0.94889 1.04130 1.18799 0.92559 0.91260 1.06589 1.19918 0.91532 0.97092 1.01054 1.18759 0.90023 0.90366 1.17948 1.18030 0.96412 0.90330 0.93136 1.21314 0.99193 0.94389 0.97950 1.21012 1.00693 0.93930 0.98279 1.21073 1.00430 0.99395 0.94152 1.20996 0.99842 0.94705 0.98332 1.21272 0.99888 0.93533 0.97836 1.18870 0.92213 0.82437 1.02257 1.17980 0.91088 0.96387 0.95858 1.21206 0.93379 0.98958 0.98183 1.20956 0.96472 0.97296 0.99236 1.21136 0.99077 0.98178 0.95172 1.20981 0.93681 1.00292 0.98842 1.21129 0.96743 0.95162 0.96856 1.44382 1.05072 1.04825 1.56726 1.20146 0.84959 0.86531 0.99909 1.21136 1.20945 1.25393 0.90251 0.90114 1.24785 0.96033 0.95835 0.95577 1.69865 1.30609 1.33054 1.18567 0.86979 0.80062 0.80615 0.82988 1.19650 1.20447 1.18923 0.91985 0.92198 0.92276 0.86418 0.86070 0.86936 0.86150 0.86470 0.86727 0.86571 0.86493 0.86331 0.86178 0.86345 0.86075 0.85984 0.93523 0.94425 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.00 36.01 0.36 -0.81 16 2 C -0.12 -1.86 5.85 -104.98 -0.61 -2.47 16 3 C -0.11 -1.80 9.66 -39.55 -0.38 -2.18 16 4 C -0.11 -2.01 9.91 -39.39 -0.39 -2.40 16 5 C 0.11 2.18 6.78 -83.92 -0.57 1.62 16 6 C -0.09 -1.66 6.34 -104.97 -0.67 -2.33 16 7 C -0.08 -1.28 9.67 -39.65 -0.38 -1.66 16 8 C -0.16 -3.01 5.73 -102.48 -0.59 -3.60 16 9 C 0.02 0.34 5.08 -104.93 -0.53 -0.19 16 10 C -0.11 -1.58 9.79 -39.20 -0.38 -1.96 16 11 C -0.12 -1.46 10.03 -39.64 -0.40 -1.86 16 12 C -0.13 -1.51 10.04 -39.49 -0.40 -1.90 16 13 C -0.12 -1.46 10.03 -39.63 -0.40 -1.86 16 14 C -0.11 -1.53 9.79 -39.20 -0.38 -1.91 16 15 C 0.15 3.07 6.31 -81.67 -0.52 2.56 16 16 C -0.01 -0.23 5.20 -104.99 -0.55 -0.77 16 17 C -0.10 -1.69 8.37 -39.16 -0.33 -2.02 16 18 C -0.12 -1.80 10.03 -39.64 -0.40 -2.19 16 19 C -0.12 -1.63 10.04 -39.48 -0.40 -2.03 16 20 C -0.12 -1.77 10.03 -39.64 -0.40 -2.16 16 21 C -0.08 -1.37 9.30 -39.16 -0.36 -1.73 16 22 N -0.43 -9.43 2.78 -111.07 -0.31 -9.74 16 23 C 0.20 4.75 4.57 -5.20 -0.02 4.72 16 24 C -0.54 -14.80 9.94 -34.44 -0.34 -15.15 16 25 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 26 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 27 N -0.88 -26.11 13.96 55.43 0.77 -25.34 16 28 Si 0.87 20.12 27.47 -169.99 -4.67 15.45 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 30 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 31 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 35 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.12 2.26 8.00 -52.49 -0.42 1.84 16 37 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.12 1.97 7.38 -52.49 -0.39 1.59 16 44 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 46 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 47 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 48 H 0.05 1.07 4.83 -51.93 -0.25 0.81 16 49 H 0.04 0.85 7.44 -51.93 -0.39 0.47 16 50 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 419.87 15.07 6.33 6.33 Total: -1.00 -30.65 419.87 -13.96 -44.61 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.95 Total: 8.81 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: -9.13 Total: -40.12 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.47 Total: -35.07 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.67 Total: 15.45 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -30.65 -13.96 -44.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002294597.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.003 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds