Wall clock time and date at job start Tue Mar 31 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38796 * 119.76028 * 2 1 4 4 C 1.37773 * 120.65820 * 180.02562 * 3 2 1 5 5 C 1.39202 * 119.83274 * 0.02562 * 4 3 2 6 6 C 1.40580 * 119.23354 * 359.97438 * 5 4 3 7 7 C 1.36665 * 119.76578 * 180.02562 * 2 1 3 8 8 C 1.47002 * 106.32384 * 180.02562 * 6 5 4 9 9 C 1.47981 * 126.75724 * 179.97438 * 8 6 5 10 10 C 1.39545 * 120.14299 * 293.90929 * 9 8 6 11 11 C 1.37958 * 119.85899 * 180.27475 * 10 9 8 12 12 C 1.38358 * 120.14130 * 359.47300 * 11 10 9 13 13 C 1.38363 * 120.28510 * 0.29741 * 12 11 10 14 14 C 1.37966 * 120.13701 * 359.95861 * 13 12 11 15 15 C 1.37893 * 106.48607 * 0.24206 * 8 6 5 16 16 C 1.47641 * 125.40905 * 179.75804 * 15 8 6 17 17 C 1.39670 * 120.15346 * 124.93847 * 16 15 8 18 18 C 1.37937 * 119.83945 * 179.72327 * 17 16 15 19 19 C 1.38366 * 120.15801 * 0.55837 * 18 17 16 20 20 C 1.38379 * 120.30875 * 359.72191 * 19 18 17 21 21 C 1.37929 * 120.15612 * 359.97438 * 20 19 18 22 22 N 1.37378 * 109.18771 * 359.60766 * 15 8 6 23 23 C 1.46499 * 124.92379 * 180.14276 * 22 15 8 24 24 C 1.50694 * 109.46964 * 270.28020 * 23 22 15 25 25 H 1.08001 * 120.00043 * 0.02562 * 24 23 22 26 26 C 1.37879 * 120.00126 * 179.97438 * 24 23 22 27 27 N 1.31513 * 120.00347 * 180.02562 * 26 24 23 28 28 Si 1.86804 * 119.99706 * 0.02562 * 26 24 23 29 29 H 1.48504 * 109.47096 * 89.99963 * 28 26 24 30 30 H 1.48500 * 109.46790 * 209.99662 * 28 26 24 31 31 H 1.48498 * 109.47051 * 329.99568 * 28 26 24 32 32 H 1.08994 * 109.47388 * 269.97596 * 1 2 3 33 33 H 1.09004 * 109.47146 * 29.98775 * 1 2 3 34 34 H 1.09002 * 109.46620 * 149.97769 * 1 2 3 35 35 H 1.07998 * 119.67486 * 0.03605 * 3 2 1 36 36 H 1.07998 * 120.08206 * 180.02562 * 4 3 2 37 37 H 1.07997 * 120.09924 * 0.02562 * 7 2 1 38 38 H 1.08005 * 120.06704 * 0.02765 * 10 9 8 39 39 H 1.07997 * 119.93256 * 179.75074 * 11 10 9 40 40 H 1.08002 * 119.86127 * 180.27625 * 12 11 10 41 41 H 1.07992 * 119.93215 * 179.97438 * 13 12 11 42 42 H 1.08000 * 120.06707 * 180.02562 * 14 13 12 43 43 H 1.07999 * 120.07726 * 359.97438 * 17 16 15 44 44 H 1.08002 * 119.91736 * 180.27779 * 18 17 16 45 45 H 1.08002 * 119.84864 * 179.69497 * 19 18 17 46 46 H 1.07999 * 119.92040 * 180.02562 * 20 19 18 47 47 H 1.07998 * 120.08035 * 180.02562 * 21 20 19 48 48 H 1.08996 * 109.47305 * 30.28306 * 23 22 15 49 49 H 1.09000 * 109.47134 * 150.28439 * 23 22 15 50 50 H 0.96996 * 120.00552 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2049 0.0000 4 6 3.5735 1.2265 -0.0005 5 6 4.2849 0.0299 -0.0016 6 6 3.5812 -1.1871 -0.0016 7 6 2.1855 -1.1863 -0.0005 8 6 4.5957 -2.2509 -0.0022 9 6 4.3489 -3.7100 -0.0019 10 6 3.7505 -4.3192 1.1018 11 6 3.5283 -5.6808 1.0981 12 6 3.8874 -6.4404 -0.0011 13 6 4.4767 -5.8417 -1.1006 14 6 4.7091 -4.4818 -1.1072 15 6 5.8227 -1.6216 0.0030 16 6 7.1330 -2.3019 0.0095 17 6 8.0789 -2.0119 -0.9764 18 6 9.3032 -2.6471 -0.9609 19 6 9.5909 -3.5781 0.0215 20 6 8.6563 -3.8745 0.9979 21 6 7.4303 -3.2424 0.9983 22 7 5.6323 -0.2611 -0.0021 23 6 6.7056 0.7360 -0.0018 24 6 7.0737 1.0774 1.4190 25 1 6.5597 0.5992 2.2398 26 6 8.0672 1.9995 1.6713 27 7 8.3887 2.2972 2.9113 28 14 8.9566 2.8261 0.2516 29 1 8.2397 4.0713 -0.1239 30 1 10.3441 3.1587 0.6633 31 1 8.9930 1.9054 -0.9129 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8901 -0.5137 34 1 -0.3633 -0.8898 -0.5142 35 1 1.6468 2.1348 0.0006 36 1 4.1002 2.1694 -0.0001 37 1 1.6433 -2.1203 -0.0014 38 1 3.4657 -3.7266 1.9586 39 1 3.0690 -6.1541 1.9533 40 1 3.7072 -7.5053 -0.0009 41 1 4.7550 -6.4401 -1.9554 42 1 5.1687 -4.0156 -1.9662 43 1 7.8537 -1.2891 -1.7467 44 1 10.0372 -2.4205 -1.7200 45 1 10.5493 -4.0760 0.0260 46 1 8.8876 -4.6019 1.7620 47 1 6.7020 -3.4744 1.7612 48 1 7.5775 0.3314 -0.5158 49 1 6.3661 1.6355 -0.5154 50 1 9.0874 2.9462 3.0888 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002294597.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:03 Heat of formation + Delta-G solvation = 88.452339 kcal Electronic energy + Delta-G solvation = -32556.328307 eV Core-core repulsion = 28670.337048 eV Total energy + Delta-G solvation = -3885.991260 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.163 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.31369 -39.91449 -39.63921 -38.29507 -35.52958 -34.15433 -33.18485 -32.03401 -31.83862 -31.69205 -31.54549 -30.22640 -28.21390 -27.05022 -24.80529 -24.39656 -23.52859 -23.25307 -22.99210 -22.19159 -21.31992 -20.32935 -19.27882 -18.30335 -17.87841 -17.23520 -16.97522 -16.48784 -16.18717 -16.08298 -15.73403 -15.56360 -15.47316 -15.14285 -14.96759 -14.86312 -14.51865 -14.38102 -14.21934 -14.20046 -14.09924 -13.99849 -13.67135 -13.50270 -13.37298 -13.08995 -12.85933 -12.67671 -12.47242 -12.30944 -12.13409 -12.10517 -12.06171 -11.91880 -11.89955 -11.62935 -11.48062 -10.95411 -10.48479 -9.88021 -9.85806 -9.75340 -9.55788 -8.79164 -8.45968 -8.28477 -6.55179 -0.07624 0.42578 0.46633 0.50156 0.58925 0.75763 1.25018 1.26319 1.36144 1.63686 2.08815 2.18891 2.85996 2.88702 2.94834 3.00677 3.54817 3.77956 3.84877 3.98392 4.05518 4.11722 4.14589 4.20203 4.22005 4.27476 4.28339 4.35678 4.47616 4.50214 4.54391 4.60280 4.64627 4.70137 4.73101 4.79152 4.88653 4.90118 4.94984 5.04493 5.09193 5.13150 5.19476 5.21547 5.23956 5.27350 5.46839 5.50914 5.54965 5.58461 5.60699 5.68008 5.78473 5.83393 5.91180 5.96215 6.03781 6.05443 6.19951 6.39150 6.43280 6.51518 7.08707 8.71215 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.006865 B = 0.004921 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4077.730906 B = 5688.354250 C = 8867.214032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.117 4.117 3 C -0.103 4.103 4 C -0.136 4.136 5 C 0.071 3.929 6 C -0.108 4.108 7 C -0.082 4.082 8 C -0.157 4.157 9 C 0.001 3.999 10 C -0.125 4.125 11 C -0.117 4.117 12 C -0.124 4.124 13 C -0.117 4.117 14 C -0.119 4.119 15 C 0.126 3.874 16 C -0.035 4.035 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.112 4.112 20 C -0.120 4.120 21 C -0.101 4.101 22 N -0.456 5.456 23 C 0.219 3.781 24 C -0.542 4.542 25 H 0.022 0.978 26 C 0.026 3.974 27 N -0.934 5.934 28 Si 0.940 3.060 29 H -0.259 1.259 30 H -0.272 1.272 31 H -0.243 1.243 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.149 0.851 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.143 0.857 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.150 0.850 45 H 0.158 0.842 46 H 0.148 0.852 47 H 0.109 0.891 48 H 0.054 0.946 49 H 0.042 0.958 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.597 -15.047 -9.831 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.122 4.122 4 C -0.157 4.157 5 C -0.036 4.036 6 C -0.112 4.112 7 C -0.100 4.100 8 C -0.164 4.164 9 C 0.000 4.000 10 C -0.143 4.143 11 C -0.135 4.135 12 C -0.142 4.142 13 C -0.135 4.135 14 C -0.137 4.137 15 C 0.016 3.984 16 C -0.036 4.036 17 C -0.138 4.138 18 C -0.138 4.138 19 C -0.130 4.130 20 C -0.138 4.138 21 C -0.120 4.120 22 N -0.133 5.133 23 C 0.098 3.902 24 C -0.580 4.580 25 H 0.040 0.960 26 C -0.174 4.174 27 N -0.573 5.573 28 Si 0.761 3.239 29 H -0.184 1.184 30 H -0.197 1.197 31 H -0.167 1.167 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.167 0.833 36 H 0.129 0.871 37 H 0.148 0.852 38 H 0.126 0.874 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.161 0.839 42 H 0.126 0.874 43 H 0.131 0.869 44 H 0.168 0.832 45 H 0.175 0.825 46 H 0.166 0.834 47 H 0.127 0.873 48 H 0.072 0.928 49 H 0.060 0.940 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.205 -14.668 -9.723 19.015 hybrid contribution 0.754 1.375 0.261 1.590 sum -6.451 -13.292 -9.462 17.545 Atomic orbital electron populations 1.20712 0.88448 1.03573 1.02804 1.19714 0.97709 0.91894 1.02522 1.20952 0.91727 0.98980 1.00507 1.20326 0.94921 0.94791 1.05622 1.18640 0.83071 0.96323 1.05575 1.19188 0.93846 0.90974 1.07186 1.20213 0.90590 0.98574 1.00670 1.19169 0.89445 0.91905 1.15900 1.18012 0.98381 0.89012 0.94595 1.21303 1.00049 0.95698 0.97275 1.21306 0.99909 0.92757 0.99511 1.21485 0.98606 1.01021 0.93042 1.21309 0.98904 0.93710 0.99556 1.21278 1.00494 0.94706 0.97215 1.19355 0.93764 0.81953 1.03370 1.18137 0.91090 0.97263 0.97080 1.21330 0.94446 0.99887 0.98155 1.21351 0.95856 0.96616 1.00007 1.21590 1.00174 0.97369 0.93883 1.21343 0.92658 1.00113 0.99652 1.21189 0.97934 0.96096 0.96754 1.44286 1.05014 1.05222 1.58792 1.19782 0.86016 0.87390 0.96972 1.21183 1.20696 1.25160 0.90999 0.95967 1.25738 0.96689 0.96263 0.98671 1.70025 1.31718 1.34227 1.21317 0.85835 0.78583 0.79912 0.79578 1.18371 1.19718 1.16676 0.90797 0.90327 0.90824 0.83349 0.87057 0.85198 0.87415 0.83873 0.83208 0.83876 0.87380 0.86881 0.83202 0.82485 0.83381 0.87283 0.92848 0.93985 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 10.00 71.24 0.71 -1.28 16 2 C -0.12 -3.48 5.85 -20.10 -0.12 -3.59 16 3 C -0.10 -3.29 9.66 22.29 0.22 -3.08 16 4 C -0.14 -5.46 9.91 22.39 0.22 -5.23 16 5 C 0.07 3.16 6.78 39.00 0.26 3.42 16 6 C -0.11 -4.35 6.34 -20.09 -0.13 -4.47 16 7 C -0.08 -2.75 9.67 22.22 0.21 -2.54 16 8 C -0.16 -6.22 5.73 -18.48 -0.11 -6.32 16 9 C 0.00 0.02 5.08 -20.06 -0.10 -0.08 16 10 C -0.12 -3.66 9.79 22.52 0.22 -3.44 16 11 C -0.12 -2.61 10.03 22.23 0.22 -2.39 16 12 C -0.12 -2.43 10.04 22.33 0.22 -2.21 16 13 C -0.12 -2.59 10.03 22.24 0.22 -2.37 16 14 C -0.12 -3.42 9.79 22.52 0.22 -3.20 16 15 C 0.13 5.43 6.31 40.68 0.26 5.69 16 16 C -0.03 -1.37 5.20 -20.10 -0.10 -1.48 16 17 C -0.12 -4.22 8.37 22.54 0.19 -4.03 16 18 C -0.12 -3.41 10.03 22.23 0.22 -3.19 16 19 C -0.11 -2.88 10.04 22.33 0.22 -2.66 16 20 C -0.12 -3.45 10.03 22.23 0.22 -3.23 16 21 C -0.10 -3.63 9.30 22.54 0.21 -3.42 16 22 N -0.46 -21.47 2.78 -505.32 -1.40 -22.87 16 23 C 0.22 10.83 4.57 85.63 0.39 11.22 16 24 C -0.54 -31.96 9.94 25.60 0.25 -31.71 16 25 H 0.02 1.52 8.06 -2.91 -0.02 1.49 16 26 C 0.03 1.52 5.47 84.66 0.46 1.98 16 27 N -0.93 -57.90 13.96 21.45 0.30 -57.60 16 28 Si 0.94 42.26 27.47 68.60 1.88 44.14 16 29 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 30 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 31 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 34 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 35 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.11 4.50 8.00 -2.91 -0.02 4.48 16 37 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.11 3.31 8.06 -2.91 -0.02 3.29 16 39 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 40 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 41 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 42 H 0.11 3.21 8.06 -2.91 -0.02 3.18 16 43 H 0.11 3.96 7.38 -2.91 -0.02 3.93 16 44 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 45 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 46 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 47 H 0.11 4.04 8.06 -2.91 -0.02 4.02 16 48 H 0.05 2.54 4.83 -2.39 -0.01 2.53 16 49 H 0.04 2.00 7.44 -2.39 -0.02 1.99 16 50 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -74.07 419.87 6.28 -67.79 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.88 Total: 36.12 kcal Atomic # 6 Polarization: -72.20 SS G_CDS: 4.62 Total: -67.58 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -1.10 Total: -80.47 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.14 kcal Total: -74.07 6.28 -67.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002294597.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.241 kcal (2) G-P(sol) polarization free energy of solvation -74.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds