Wall clock time and date at job start Tue Mar 31 2020 06:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00070 * 2 1 4 4 H 1.48503 * 109.47435 * 240.00332 * 3 2 1 5 5 H 1.48500 * 109.46927 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47285 * 120.00126 * 3 2 1 7 7 C 1.37881 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99888 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00070 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47291 * 300.00340 * 9 7 2 11 11 N 1.46492 * 109.47046 * 180.02562 * 9 7 2 12 12 C 1.34779 * 119.99978 * 155.00147 * 11 9 7 13 13 O 1.21510 * 119.99829 * 359.97438 * 12 11 9 14 14 O 1.34644 * 119.99790 * 179.97438 * 12 11 9 15 15 C 1.45195 * 116.99745 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47160 * 179.97438 * 15 14 12 17 17 C 1.50913 * 110.14018 * 174.99772 * 16 15 14 18 18 C 1.37895 * 132.18489 * 299.19416 * 17 16 15 19 19 C 1.38344 * 120.04102 * 180.02562 * 18 17 16 20 20 C 1.38335 * 120.09718 * 359.97438 * 19 18 17 21 21 C 1.37925 * 120.25659 * 359.97438 * 20 19 18 22 22 C 1.39203 * 107.52537 * 119.19074 * 17 16 15 23 23 C 1.48393 * 109.45471 * 0.03467 * 22 17 16 24 24 C 1.39622 * 131.18998 * 180.02562 * 23 22 17 25 25 C 1.37920 * 119.95763 * 179.97438 * 24 23 22 26 26 C 1.38342 * 120.25859 * 359.97438 * 25 24 23 27 27 C 1.38348 * 120.09664 * 0.02562 * 26 25 24 28 28 C 1.37901 * 120.03902 * 359.97031 * 27 26 25 29 29 C 1.50701 * 109.46933 * 60.00388 * 9 7 2 30 30 O 1.20825 * 119.99716 * 120.00399 * 29 9 7 31 31 O 1.34236 * 119.99779 * 299.99655 * 29 9 7 32 32 H 0.97001 * 120.00447 * 359.97438 * 1 2 3 33 33 H 0.97006 * 120.00453 * 334.99633 * 11 9 7 34 34 H 1.09007 * 109.47336 * 59.99702 * 15 14 12 35 35 H 1.08998 * 109.47472 * 300.00378 * 15 14 12 36 36 H 1.08993 * 110.11710 * 53.34098 * 16 15 14 37 37 H 1.08003 * 119.97510 * 0.02562 * 18 17 16 38 38 H 1.08005 * 119.95134 * 180.02562 * 19 18 17 39 39 H 1.08001 * 119.87156 * 180.02562 * 20 19 18 40 40 H 1.08001 * 120.01560 * 179.74416 * 21 20 19 41 41 H 1.07996 * 120.02230 * 359.92957 * 24 23 22 42 42 H 1.07994 * 119.87221 * 180.02562 * 25 24 23 43 43 H 1.08002 * 119.95326 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.98703 * 179.97438 * 27 26 25 45 45 H 0.96700 * 116.99606 * 180.02562 * 31 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5572 0.8897 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 0.4927 13 8 0.7173 -4.9701 0.9378 14 8 2.7117 -5.8358 0.4922 15 6 2.2490 -7.0986 1.0395 16 6 3.3723 -8.1338 0.9536 17 6 2.9502 -9.4158 1.6286 18 6 2.5832 -9.7015 2.9268 19 6 2.2362 -10.9933 3.2801 20 6 2.2561 -12.0008 2.3323 21 6 2.6208 -11.7239 1.0313 22 6 2.9732 -10.4228 0.6677 23 6 3.3999 -9.8536 -0.6346 24 6 3.5755 -10.4492 -1.8851 25 6 3.9866 -9.6877 -2.9590 26 6 4.2258 -8.3341 -2.8029 27 6 4.0538 -7.7372 -1.5667 28 6 3.6429 -8.4909 -0.4874 29 6 0.3842 -2.5788 -1.2307 30 8 0.5451 -3.4738 -2.0262 31 8 -0.5667 -1.6553 -1.4426 32 1 -0.4851 0.8400 0.0004 33 1 3.0969 -3.4866 -0.3556 34 1 1.3886 -7.4484 0.4690 35 1 1.9616 -6.9595 2.0817 36 1 4.2773 -7.7445 1.4199 37 1 2.5667 -8.9162 3.6681 38 1 1.9486 -11.2153 4.2972 39 1 1.9841 -13.0078 2.6121 40 1 2.6389 -12.5143 0.2955 41 1 3.3902 -11.5056 -2.0113 42 1 4.1216 -10.1497 -3.9258 43 1 4.5479 -7.7425 -3.6471 44 1 4.2414 -6.6804 -1.4468 45 1 -1.0978 -1.7483 -2.2453 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002386115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:50 Heat of formation + Delta-G solvation = -100.388243 kcal Electronic energy + Delta-G solvation = -32195.949628 eV Core-core repulsion = 27722.794517 eV Total energy + Delta-G solvation = -4473.155110 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.18318 -39.82925 -38.64007 -38.32378 -36.37955 -34.80583 -34.58073 -34.27248 -32.53804 -32.21247 -30.69787 -29.13825 -28.90633 -27.85858 -24.72489 -23.93745 -23.61211 -21.75662 -21.43921 -21.00559 -20.61788 -19.73784 -18.59948 -17.18304 -16.97744 -16.61905 -16.47245 -16.08326 -16.01414 -15.72734 -15.20184 -14.93839 -14.74166 -14.60134 -14.42168 -14.14136 -13.98097 -13.65893 -13.53659 -13.32923 -13.12869 -12.90261 -12.56372 -12.41565 -12.11334 -11.81952 -11.67033 -11.53623 -11.41206 -11.12626 -11.04836 -11.04425 -10.88297 -10.50390 -10.20218 -10.06122 -9.92987 -9.84124 -9.79347 -9.46959 -9.13640 -8.82360 -8.80787 -8.23233 -8.17671 -6.26996 -4.49224 0.48703 1.10369 1.29303 1.76628 2.66469 3.18786 3.23668 3.25220 3.40140 3.50268 3.73912 3.90073 4.01587 4.19847 4.25496 4.42443 4.61916 4.71017 4.80256 4.88375 4.93252 5.00312 5.02776 5.09501 5.14013 5.21674 5.31460 5.35728 5.47918 5.53854 5.61882 5.72716 5.79365 5.84059 5.93191 6.10802 6.24323 6.30430 6.37241 6.44092 6.58172 6.59033 6.70498 6.71408 6.86760 7.01145 7.15189 7.42355 7.60369 7.90804 8.30497 8.48892 9.01372 9.19272 9.46879 10.70851 Molecular weight = 367.13amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.002340 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.570808 B =11965.244278 C =12872.753649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.069 3.931 3 Si 0.910 3.090 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.552 4.552 8 H 0.077 0.923 9 C 0.301 3.699 10 H 0.087 0.913 11 N -0.674 5.674 12 C 0.649 3.351 13 O -0.580 6.580 14 O -0.373 6.373 15 C 0.109 3.891 16 C -0.009 4.009 17 C -0.085 4.085 18 C -0.094 4.094 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.099 4.099 22 C -0.047 4.047 23 C -0.063 4.063 24 C -0.099 4.099 25 C -0.121 4.121 26 C -0.112 4.112 27 C -0.083 4.083 28 C -0.079 4.079 29 C 0.473 3.527 30 O -0.575 6.575 31 O -0.445 6.445 32 H 0.271 0.729 33 H 0.403 0.597 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.529 -19.723 1.394 21.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.141 4.141 3 Si 0.737 3.263 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.095 0.905 9 C 0.197 3.803 10 H 0.104 0.896 11 N -0.331 5.331 12 C 0.401 3.599 13 O -0.470 6.470 14 O -0.288 6.288 15 C 0.034 3.966 16 C -0.027 4.027 17 C -0.085 4.085 18 C -0.112 4.112 19 C -0.133 4.133 20 C -0.135 4.135 21 C -0.117 4.117 22 C -0.047 4.047 23 C -0.063 4.063 24 C -0.117 4.117 25 C -0.139 4.139 26 C -0.130 4.130 27 C -0.101 4.101 28 C -0.079 4.079 29 C 0.317 3.683 30 O -0.470 6.470 31 O -0.246 6.246 32 H 0.081 0.919 33 H 0.237 0.763 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.132 0.868 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 7.037 -19.901 1.806 21.186 hybrid contribution 0.293 0.729 -0.903 1.197 sum 7.330 -19.172 0.903 20.545 Atomic orbital electron populations 1.69899 1.05556 1.27555 1.42318 1.25024 0.95104 0.99608 0.94388 0.86355 0.79439 0.81609 0.78921 1.20000 1.20876 1.19764 1.20821 0.93610 0.87787 1.56721 0.90529 1.18158 0.87116 0.83431 0.91624 0.89566 1.44695 1.17633 1.07531 1.63197 1.18130 0.82394 0.81216 0.78139 1.90952 1.20492 1.83257 1.52274 1.86153 1.44264 1.20048 1.78325 1.22587 0.95510 0.79178 0.99373 1.19162 0.99380 0.92077 0.92088 1.20008 1.00348 0.94278 0.93853 1.20479 0.99009 0.97166 0.94536 1.21143 0.99918 0.92515 0.99727 1.21025 1.00120 0.99478 0.92897 1.20844 0.99316 0.95071 0.96481 1.19255 0.99442 0.93652 0.92318 1.19231 1.00943 0.93916 0.92257 1.20780 0.99897 0.99704 0.91342 1.21008 1.00147 0.94242 0.98462 1.21221 0.99660 0.94904 0.97170 1.20583 0.97946 1.00352 0.91218 1.20123 0.99486 0.93694 0.94599 1.25587 0.77656 0.76383 0.88673 1.90521 1.70614 1.36798 1.49044 1.85541 1.44704 1.50436 1.43966 0.91906 0.76261 0.90965 0.90561 0.86818 0.85396 0.85418 0.85632 0.85952 0.86166 0.85737 0.85413 0.84901 0.79355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.36 10.00 55.43 0.55 -20.80 16 2 C 0.07 1.72 5.23 -17.82 -0.09 1.63 16 3 Si 0.91 19.37 29.54 -169.99 -5.02 14.35 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 7 C -0.55 -13.86 8.72 -34.44 -0.30 -14.16 16 8 H 0.08 1.81 7.74 -52.49 -0.41 1.41 16 9 C 0.30 7.54 2.51 -70.24 -0.18 7.37 16 10 H 0.09 2.37 7.58 -51.93 -0.39 1.98 16 11 N -0.67 -14.78 4.61 -61.01 -0.28 -15.06 16 12 C 0.65 14.15 8.58 54.06 0.46 14.62 16 13 O -0.58 -14.41 15.79 -19.28 -0.30 -14.72 16 14 O -0.37 -6.64 9.43 -40.34 -0.38 -7.02 16 15 C 0.11 1.67 4.87 37.16 0.18 1.86 16 16 C -0.01 -0.12 3.17 -92.72 -0.29 -0.41 16 17 C -0.08 -1.01 5.60 -104.29 -0.58 -1.60 16 18 C -0.09 -0.96 10.03 -39.67 -0.40 -1.35 16 19 C -0.12 -1.01 10.05 -39.51 -0.40 -1.40 16 20 C -0.12 -1.00 10.02 -39.66 -0.40 -1.40 16 21 C -0.10 -0.97 10.09 -39.18 -0.40 -1.37 16 22 C -0.05 -0.56 6.20 -104.84 -0.65 -1.21 16 23 C -0.06 -0.81 6.20 -104.84 -0.65 -1.46 16 24 C -0.10 -1.09 10.09 -39.18 -0.40 -1.49 16 25 C -0.12 -1.27 10.02 -39.66 -0.40 -1.66 16 26 C -0.11 -1.29 10.05 -39.50 -0.40 -1.69 16 27 C -0.08 -1.10 9.68 -39.66 -0.38 -1.49 16 28 C -0.08 -1.07 5.55 -104.29 -0.58 -1.65 16 29 C 0.47 12.23 7.62 36.01 0.27 12.50 16 30 O -0.58 -15.51 17.08 -18.75 -0.32 -15.83 16 31 O -0.44 -10.80 9.85 -39.27 -0.39 -11.19 16 32 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.40 7.78 8.65 -40.82 -0.35 7.43 16 34 H 0.07 1.23 8.13 -51.92 -0.42 0.81 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.13 1.78 7.66 -52.48 -0.40 1.37 16 45 H 0.35 6.93 9.10 45.56 0.41 7.34 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -32.63 391.76 -10.31 -42.94 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -4.50 Total: 15.79 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -5.57 Total: 5.64 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.27 Total: -35.86 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -1.39 Total: -48.76 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.63 -10.31 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002386115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.453 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds