Wall clock time and date at job start Tue Mar 31 2020 05:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31655 * 1 3 3 Si 1.86802 * 120.00123 * 2 1 4 4 H 1.48501 * 109.46941 * 269.99813 * 3 2 1 5 5 H 1.48501 * 109.47172 * 30.00023 * 3 2 1 6 6 H 1.48503 * 109.47533 * 150.00032 * 3 2 1 7 7 C 1.38617 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00749 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99663 * 0.02562 * 7 2 1 10 10 C 1.76205 * 99.99907 * 180.02562 * 9 7 2 11 11 N 1.31557 * 126.40512 * 0.02562 * 10 9 7 12 12 N 1.28503 * 110.09572 * 179.97438 * 11 10 9 13 13 C 1.31551 * 110.01808 * 359.97438 * 12 11 10 14 14 C 1.47695 * 126.45826 * 179.97438 * 13 12 11 15 15 C 1.39664 * 120.08558 * 165.02779 * 14 13 12 16 16 C 1.37883 * 119.99508 * 179.97438 * 15 14 13 17 17 C 1.38757 * 120.21993 * 0.02562 * 16 15 14 18 18 C 1.39455 * 120.07221 * 359.97438 * 17 16 15 19 19 C 1.38238 * 119.97837 * 0.02562 * 18 17 16 20 20 O 1.36532 * 108.61212 * 179.97438 * 18 17 16 21 21 C 1.43979 * 105.48058 * 17.31074 * 20 18 17 22 22 O 1.36515 * 131.34428 * 179.97438 * 17 16 15 23 23 N 1.37045 * 126.40127 * 180.28771 * 10 9 7 24 24 C 1.40132 * 127.19759 * 0.02562 * 23 10 9 25 25 C 1.38841 * 120.06868 * 114.88512 * 24 23 10 26 26 C 1.38121 * 119.93082 * 179.74552 * 25 24 23 27 27 C 1.38284 * 120.06591 * 0.50372 * 26 25 24 28 28 C 1.38277 * 120.13748 * 359.77150 * 27 26 25 29 29 C 1.38121 * 120.06564 * 359.97438 * 28 27 26 30 30 H 0.97002 * 120.00342 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00403 * 0.02562 * 15 14 13 32 32 H 1.07995 * 119.89175 * 180.02562 * 16 15 14 33 33 H 1.07995 * 120.04520 * 180.02562 * 19 18 17 34 34 H 1.08996 * 110.56650 * 214.23675 * 21 20 18 35 35 H 1.08997 * 110.56769 * 91.37353 * 21 20 18 36 36 H 1.07993 * 120.03578 * 359.97438 * 25 24 23 37 37 H 1.08001 * 119.96931 * 180.22933 * 26 25 24 38 38 H 1.08001 * 119.93295 * 179.74872 * 27 26 25 39 39 H 1.08004 * 119.97131 * 179.97438 * 28 27 26 40 40 H 1.07995 * 120.03522 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2506 1.6177 0.0000 4 1 2.4981 2.0464 -1.4001 5 1 1.4481 2.6527 0.7000 6 1 3.5482 1.4402 0.7000 7 6 2.0097 -1.2004 0.0005 8 1 3.0897 -1.2005 0.0010 9 16 1.1287 -2.7264 0.0005 10 6 2.4785 -3.8590 0.0021 11 7 3.7572 -3.5497 0.0034 12 7 4.4700 -4.6189 0.0048 13 6 3.6914 -5.6793 0.0050 14 6 4.1294 -7.0898 0.0060 15 6 3.2220 -8.1045 0.3183 16 6 3.6328 -9.4207 0.3181 17 6 4.9467 -9.7422 0.0088 18 6 5.8578 -8.7338 -0.3040 19 6 5.4519 -7.4123 -0.3055 20 8 7.0689 -9.3069 -0.5664 21 6 6.7907 -10.6981 -0.8114 22 8 5.5888 -10.9450 -0.0589 23 7 2.3925 -5.2267 -0.0029 24 6 1.2253 -6.0022 -0.0107 25 6 0.9306 -6.8046 -1.1048 26 6 -0.2179 -7.5718 -1.1072 27 6 -1.0791 -7.5333 -0.0259 28 6 -0.7912 -6.7308 1.0627 29 6 0.3585 -5.9653 1.0733 30 1 -0.4851 0.8400 -0.0004 31 1 2.1984 -7.8583 0.5592 32 1 2.9296 -10.2040 0.5595 33 1 6.1565 -6.6306 -0.5479 34 1 7.6066 -11.3218 -0.4461 35 1 6.6196 -10.8731 -1.8736 36 1 1.6005 -6.8317 -1.9514 37 1 -0.4460 -8.1990 -1.9563 38 1 -1.9787 -8.1310 -0.0319 39 1 -1.4659 -6.7024 1.9056 40 1 0.5831 -5.3390 1.9239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002616644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:25 Heat of formation + Delta-G solvation = 78.368671 kcal Electronic energy + Delta-G solvation = -29322.106286 eV Core-core repulsion = 25195.915185 eV Total energy + Delta-G solvation = -4126.191101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 367.078 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.44210 -42.17624 -39.26518 -37.94758 -36.46710 -34.51143 -32.73023 -31.84658 -31.14845 -30.48878 -29.59525 -28.70371 -26.12176 -25.70423 -24.05576 -23.45799 -22.92346 -22.72211 -21.42764 -20.71787 -18.77180 -18.19162 -17.94736 -17.49778 -17.09486 -16.52389 -16.13322 -15.92740 -15.50525 -14.99203 -14.71080 -14.58477 -14.47178 -14.35143 -14.00251 -13.86869 -13.56914 -13.47567 -13.15177 -13.09660 -13.05436 -12.31388 -11.98612 -11.48576 -11.43907 -11.34953 -11.30967 -11.18207 -11.11912 -10.77912 -10.34935 -10.19665 -9.98806 -9.85888 -9.24140 -9.11777 -8.92905 -8.82570 -8.75800 -8.08202 -6.82340 -6.53639 -4.28306 0.62508 1.01394 1.06176 1.24441 2.25127 2.25285 2.58881 3.08322 3.15811 3.20876 3.26126 3.26955 3.30297 3.55679 3.72459 3.96322 4.29496 4.35532 4.42473 4.65388 4.77845 4.79692 4.85279 4.90864 4.93475 4.97170 4.98946 5.05374 5.24608 5.32247 5.36546 5.51861 5.69186 5.83911 5.85084 5.95040 5.98579 6.02034 6.13900 6.21654 6.31296 6.34542 6.46459 6.53878 6.67398 6.92272 7.37952 7.50934 8.30620 8.98384 9.25047 10.54202 Molecular weight = 367.08amu Principal moments of inertia in cm(-1) A = 0.011990 B = 0.002985 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.748695 B = 9378.975077 C =11423.501921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.077 3.923 3 Si 0.933 3.067 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.107 0.893 9 S 0.160 5.840 10 C 0.183 3.817 11 N -0.301 5.301 12 N -0.258 5.258 13 C 0.176 3.824 14 C 0.022 3.978 15 C -0.104 4.104 16 C -0.092 4.092 17 C 0.030 3.970 18 C 0.035 3.965 19 C -0.066 4.066 20 O -0.306 6.306 21 C 0.213 3.787 22 O -0.310 6.310 23 N -0.436 5.436 24 C 0.126 3.874 25 C -0.104 4.104 26 C -0.110 4.110 27 C -0.111 4.111 28 C -0.105 4.105 29 C -0.099 4.099 30 H 0.275 0.725 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.148 0.852 34 H 0.130 0.870 35 H 0.083 0.917 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 -22.096 -1.008 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.132 4.132 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.687 4.687 8 H 0.125 0.875 9 S 0.395 5.605 10 C -0.185 4.185 11 N -0.146 5.146 12 N -0.099 5.099 13 C -0.089 4.089 14 C 0.019 3.981 15 C -0.124 4.124 16 C -0.111 4.111 17 C -0.015 4.015 18 C -0.010 4.010 19 C -0.087 4.087 20 O -0.223 6.223 21 C 0.101 3.899 22 O -0.226 6.226 23 N -0.130 5.130 24 C 0.035 3.965 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.129 4.129 28 C -0.124 4.124 29 C -0.119 4.119 30 H 0.085 0.915 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.166 0.834 34 H 0.148 0.852 35 H 0.101 0.899 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.851 -21.276 -0.936 21.313 hybrid contribution 0.830 0.351 -0.145 0.913 sum 1.681 -20.925 -1.080 21.020 Atomic orbital electron populations 1.69950 1.06083 1.28620 1.46431 1.25071 0.95193 0.99691 0.93262 0.85912 0.79659 0.79842 0.78804 1.19850 1.20610 1.18897 1.23273 0.97389 0.89217 1.58831 0.87546 1.83634 0.97052 0.95081 1.84769 1.28726 1.02376 0.84777 1.02621 1.74811 0.98694 1.18159 1.22976 1.74260 1.26388 0.94246 1.15030 1.22328 0.80361 0.94645 1.11545 1.16983 0.92635 0.87390 1.01122 1.21257 1.00366 0.90752 1.00044 1.19850 0.91374 0.96682 1.03192 1.19913 0.94216 0.83438 1.03945 1.19490 0.83715 0.94037 1.03724 1.19950 0.95296 0.92725 1.00764 1.87391 1.25827 1.21992 1.87055 1.25606 0.86466 0.80996 0.96821 1.87338 1.34644 1.28486 1.72105 1.43662 1.04773 1.05332 1.59270 1.17529 0.87337 0.95895 0.95763 1.21204 0.97922 0.96602 0.96626 1.21017 0.93710 0.99188 0.98902 1.21279 0.99356 0.98704 0.93582 1.21073 0.96259 0.96019 0.99009 1.21306 0.94266 0.98837 0.97463 0.91499 0.83949 0.84366 0.83384 0.85222 0.89931 0.85396 0.85118 0.85372 0.84902 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.02 13.22 55.48 0.73 -23.29 16 2 C 0.08 2.08 5.49 -17.49 -0.10 1.98 16 3 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -14.85 9.37 30.87 0.29 -14.56 16 8 H 0.11 3.03 6.92 -52.49 -0.36 2.67 16 9 S 0.16 3.94 21.57 -107.50 -2.32 1.62 16 10 C 0.18 4.23 8.00 -87.63 -0.70 3.53 16 11 N -0.30 -7.48 11.02 30.82 0.34 -7.14 16 12 N -0.26 -5.78 11.96 32.60 0.39 -5.39 16 13 C 0.18 3.37 7.67 -153.61 -1.18 2.19 16 14 C 0.02 0.34 5.87 -104.98 -0.62 -0.28 16 15 C -0.10 -1.33 8.51 -39.18 -0.33 -1.66 16 16 C -0.09 -1.03 10.04 -39.52 -0.40 -1.43 16 17 C 0.03 0.37 7.16 -38.94 -0.28 0.09 16 18 C 0.03 0.46 7.14 -39.13 -0.28 0.18 16 19 C -0.07 -0.97 9.71 -39.06 -0.38 -1.35 16 20 O -0.31 -3.72 11.40 -45.79 -0.52 -4.25 16 21 C 0.21 1.78 8.89 101.05 0.90 2.68 16 22 O -0.31 -3.42 11.40 -45.74 -0.52 -3.94 16 23 N -0.44 -8.36 2.86 -58.10 -0.17 -8.53 16 24 C 0.13 1.95 3.42 -83.61 -0.29 1.67 16 25 C -0.10 -1.34 8.06 -39.40 -0.32 -1.65 16 26 C -0.11 -1.08 10.04 -39.61 -0.40 -1.48 16 27 C -0.11 -1.02 10.04 -39.55 -0.40 -1.41 16 28 C -0.10 -1.11 10.04 -39.61 -0.40 -1.51 16 29 C -0.10 -1.37 9.81 -39.40 -0.39 -1.76 16 30 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.14 1.76 4.69 -52.49 -0.25 1.51 16 32 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.15 2.21 7.93 -52.49 -0.42 1.80 16 34 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 40 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 366.06 15.07 5.52 5.52 Total: -1.00 -32.68 366.06 -10.37 -43.05 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -3.54 Total: 1.15 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -5.26 Total: -14.79 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 1.30 Total: -44.35 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -1.04 Total: -8.19 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -2.32 Total: 1.62 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.68 -10.37 -43.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002616644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.416 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds