Wall clock time and date at job start Tue Mar 31 2020 05:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45204 * 109.47590 * 2 1 4 4 C 1.34755 * 117.00338 * 179.97438 * 3 2 1 5 5 O 1.21533 * 120.00225 * 0.02562 * 4 3 2 6 6 C 1.47256 * 120.00321 * 180.02562 * 4 3 2 7 7 C 1.38323 * 126.46029 * 270.02818 * 6 4 3 8 8 C 1.50703 * 125.79899 * 359.97254 * 7 6 4 9 9 N 1.34197 * 108.40155 * 180.23962 * 7 6 4 10 10 H 0.97004 * 125.38100 * 179.73424 * 9 7 6 11 11 C 1.37835 * 109.22759 * 359.56971 * 9 7 6 12 12 C 1.46643 * 125.84788 * 180.15642 * 11 9 7 13 13 O 1.21603 * 119.99909 * 180.32769 * 12 11 9 14 14 O 1.34873 * 120.00309 * 0.32223 * 12 11 9 15 15 C 1.45200 * 117.00022 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.46696 * 180.02562 * 15 14 12 17 17 O 1.21274 * 120.00147 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99448 * 179.97438 * 16 15 14 19 19 C 1.46496 * 120.00211 * 0.02562 * 18 16 15 20 20 C 1.46499 * 119.99645 * 179.97438 * 18 16 15 21 21 C 1.50707 * 109.47124 * 90.00366 * 20 18 16 22 22 H 1.08009 * 119.99521 * 359.97438 * 21 20 18 23 23 C 1.37866 * 120.00248 * 180.02562 * 21 20 18 24 24 N 1.31517 * 120.00134 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00057 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46921 * 89.99967 * 25 23 21 27 27 H 1.48503 * 109.47191 * 209.99984 * 25 23 21 28 28 H 1.48498 * 109.47103 * 329.99899 * 25 23 21 29 29 C 1.36417 * 108.30274 * 0.42974 * 11 9 7 30 30 C 1.50694 * 126.50418 * 179.76531 * 29 11 9 31 31 H 1.09005 * 109.47017 * 299.99947 * 1 2 3 32 32 H 1.09005 * 109.46956 * 59.99695 * 1 2 3 33 33 H 1.09000 * 109.47192 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47017 * 240.00052 * 2 1 3 35 35 H 1.08999 * 109.47277 * 120.00521 * 2 1 3 36 36 H 1.09002 * 109.47152 * 90.00231 * 8 7 6 37 37 H 1.09001 * 109.46980 * 330.00331 * 8 7 6 38 38 H 1.09004 * 109.47113 * 210.00312 * 8 7 6 39 39 H 1.09001 * 109.46895 * 299.99873 * 15 14 12 40 40 H 1.08999 * 109.47429 * 60.00356 * 15 14 12 41 41 H 1.09000 * 109.47045 * 90.00107 * 19 18 16 42 42 H 1.09001 * 109.47364 * 209.99572 * 19 18 16 43 43 H 1.08997 * 109.47148 * 329.99782 * 19 18 16 44 44 H 1.09002 * 109.47347 * 210.00025 * 20 18 16 45 45 H 1.09000 * 109.47637 * 330.00472 * 20 18 16 46 46 H 0.97001 * 120.00057 * 179.97438 * 24 23 21 47 47 H 1.09001 * 109.47494 * 269.97819 * 30 29 11 48 48 H 1.09000 * 109.47552 * 29.97577 * 30 29 11 49 49 H 1.08998 * 109.47296 * 149.97822 * 30 29 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0904 0.5817 0.0005 6 6 3.9130 2.9062 0.0011 7 6 4.2271 3.6663 -1.1110 8 6 4.0520 3.2424 -2.5466 9 7 4.7198 4.8430 -0.6945 10 1 5.0221 5.5614 -1.2720 11 6 4.7249 4.8707 0.6836 12 6 5.1858 5.9848 1.5184 13 8 5.1481 5.8925 2.7303 14 8 5.6515 7.1117 0.9421 15 6 6.0912 8.1731 1.8301 16 6 6.5742 9.3437 1.0131 17 8 6.5506 9.2887 -0.1981 18 7 7.0323 10.4517 1.6287 19 6 7.0613 10.5179 3.0919 20 6 7.5023 11.5895 0.8345 21 6 6.3504 12.5224 0.5627 22 1 5.3664 12.2906 0.9431 23 6 6.5522 13.6711 -0.1725 24 7 7.7502 13.9531 -0.6362 25 14 5.1242 14.8271 -0.5100 26 1 5.0359 15.8352 0.5768 27 1 5.3409 15.5159 -1.8077 28 1 3.8606 14.0492 -0.5676 29 6 4.2336 3.6820 1.1378 30 6 4.0643 3.2737 2.5785 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.0600 3.5328 -2.8927 37 1 4.1608 2.1605 -2.6218 38 1 4.8085 3.7275 -3.1635 39 1 5.2590 8.4883 2.4595 40 1 6.9038 7.8080 2.4582 41 1 8.0184 10.1421 3.4536 42 1 6.9328 11.5520 3.4115 43 1 6.2544 9.9087 3.4992 44 1 8.2783 12.1213 1.3852 45 1 7.9092 11.2297 -0.1105 46 1 7.8922 14.7611 -1.1537 47 1 4.9731 2.7825 2.9262 48 1 3.8739 4.1579 3.1868 49 1 3.2235 2.5854 2.6647 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002631505.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:22 Heat of formation + Delta-G solvation = -165.591034 kcal Electronic energy + Delta-G solvation = -32474.886388 eV Core-core repulsion = 27789.313614 eV Total energy + Delta-G solvation = -4685.572773 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 366.172 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.14210 -40.48521 -40.04634 -38.83166 -36.78597 -36.48099 -34.92739 -33.42545 -32.72860 -32.50446 -31.76515 -29.54451 -28.53654 -27.63719 -26.75104 -25.71137 -24.80069 -23.10622 -22.67066 -21.93340 -20.36177 -19.77800 -18.96551 -18.72836 -17.65208 -16.97633 -16.86578 -16.83505 -16.48068 -16.28320 -16.15070 -15.46734 -15.34489 -15.09135 -14.57556 -14.40725 -14.18977 -13.79594 -13.70571 -13.53352 -13.31559 -13.20781 -13.15139 -13.02731 -12.66533 -12.58870 -12.47063 -12.32027 -12.29537 -12.16816 -11.99091 -11.96277 -11.92363 -11.28158 -10.99800 -10.96074 -10.87417 -10.77579 -10.68474 -10.62382 -10.22896 -9.71570 -9.28309 -9.10346 -8.61364 -8.50395 -7.81118 -6.11348 -4.16668 0.91878 1.68078 1.80460 2.27032 2.39667 2.77261 2.85436 3.16376 3.25954 3.32832 3.37454 3.82742 4.21658 4.38265 4.44447 4.51066 4.53050 4.59522 4.66606 4.83510 4.86089 4.87828 5.02588 5.05021 5.14373 5.16402 5.23490 5.25890 5.33516 5.37430 5.41960 5.53559 5.54725 5.57572 5.71844 5.82012 5.82338 6.06872 6.11383 6.15298 6.17354 6.40381 6.90267 6.90765 7.31504 7.38641 7.47114 7.56916 7.84247 8.13621 8.20408 8.76150 8.91433 9.48612 10.96753 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.001758 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.079305 B =15925.065747 C =16569.957909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.350 6.350 4 C 0.554 3.446 5 O -0.499 6.499 6 C -0.221 4.221 7 C 0.126 3.874 8 C -0.101 4.101 9 N -0.507 5.507 10 H 0.436 0.564 11 C -0.037 4.037 12 C 0.537 3.463 13 O -0.496 6.496 14 O -0.334 6.334 15 C 0.054 3.946 16 C 0.506 3.494 17 O -0.522 6.522 18 N -0.596 5.596 19 C 0.077 3.923 20 C 0.246 3.754 21 C -0.530 4.530 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.893 5.893 25 Si 0.900 3.100 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 C -0.015 4.015 30 C -0.099 4.099 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.037 0.963 45 H 0.046 0.954 46 H 0.264 0.736 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.579 -26.034 2.848 28.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 O -0.266 6.266 4 C 0.396 3.604 5 O -0.386 6.386 6 C -0.228 4.228 7 C 0.002 3.998 8 C -0.159 4.159 9 N -0.102 5.102 10 H 0.276 0.724 11 C -0.146 4.146 12 C 0.382 3.618 13 O -0.384 6.384 14 O -0.249 6.249 15 C -0.023 4.023 16 C 0.290 3.710 17 O -0.398 6.398 18 N -0.330 5.330 19 C -0.067 4.067 20 C 0.128 3.872 21 C -0.569 4.569 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.023 4.023 30 C -0.156 4.156 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.109 0.891 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.194 -26.028 2.421 28.058 hybrid contribution -0.514 1.056 -0.242 1.199 sum -10.707 -24.972 2.179 27.258 Atomic orbital electron populations 1.21813 0.92483 1.02987 1.03726 1.23076 0.95504 0.80180 1.02701 1.86695 1.23994 1.32180 1.83772 1.20132 0.80322 0.88459 0.71506 1.90860 1.60619 1.42328 1.44750 1.18151 1.16542 0.94869 0.93258 1.20652 0.97986 0.85351 0.95829 1.20624 1.04034 1.03157 0.88040 1.41645 1.47183 1.14726 1.06621 0.72362 1.18560 1.17774 0.96295 0.81929 1.19705 0.74773 0.81080 0.86261 1.90870 1.52450 1.81223 1.13892 1.86590 1.73684 1.24186 1.40448 1.22960 1.01413 0.85974 0.91959 1.19696 0.79653 0.83232 0.88376 1.90699 1.54127 1.81328 1.13685 1.48099 1.62184 1.15951 1.06732 1.21752 1.00352 1.03650 0.80932 1.19368 0.95090 0.81284 0.91465 1.21419 0.95555 1.05679 1.34244 0.92362 1.24936 0.95991 0.97831 0.95303 1.69929 1.21071 1.26139 1.36079 0.86474 0.82475 0.80618 0.77726 1.20569 1.21032 1.19886 1.19486 0.97197 0.90044 0.95532 1.20513 1.02241 1.02938 0.89912 0.91339 0.91397 0.90189 0.91137 0.91103 0.89119 0.89468 0.89865 0.88323 0.88455 0.93203 0.90156 0.92390 0.94538 0.93634 0.92619 0.90392 0.89077 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.29 37.16 0.38 -0.34 16 2 C 0.06 0.42 6.20 37.16 0.23 0.65 16 3 O -0.35 -3.47 10.23 -40.64 -0.42 -3.89 16 4 C 0.55 6.36 7.13 34.40 0.25 6.61 16 5 O -0.50 -6.75 16.90 -19.29 -0.33 -7.08 16 6 C -0.22 -2.54 6.01 -105.04 -0.63 -3.17 16 7 C 0.13 1.22 7.21 -81.53 -0.59 0.64 16 8 C -0.10 -0.63 10.24 36.01 0.37 -0.26 16 9 N -0.51 -5.31 6.01 -5.62 -0.03 -5.35 16 10 H 0.44 3.97 8.96 -40.82 -0.37 3.61 16 11 C -0.04 -0.46 7.02 -82.43 -0.58 -1.04 16 12 C 0.54 7.71 7.93 34.12 0.27 7.98 16 13 O -0.50 -7.49 14.49 -19.34 -0.28 -7.77 16 14 O -0.33 -5.28 9.77 -47.65 -0.47 -5.75 16 15 C 0.05 0.84 4.51 36.01 0.16 1.00 16 16 C 0.51 10.33 7.75 -10.98 -0.09 10.24 16 17 O -0.52 -12.92 16.08 -14.10 -0.23 -13.15 16 18 N -0.60 -12.22 2.86 -182.95 -0.52 -12.74 16 19 C 0.08 1.15 10.24 59.84 0.61 1.76 16 20 C 0.25 6.28 5.16 -5.19 -0.03 6.25 16 21 C -0.53 -14.73 9.39 -34.44 -0.32 -15.06 16 22 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 25 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 29 C -0.02 -0.19 6.21 -104.12 -0.65 -0.84 16 30 C -0.10 -1.07 9.63 36.00 0.35 -0.72 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.53 7.93 -51.93 -0.41 0.12 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 1.36 7.40 -51.93 -0.38 0.98 16 40 H 0.10 1.28 8.10 -51.93 -0.42 0.86 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 43 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 44 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 45 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 46 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.09 1.03 6.41 -51.93 -0.33 0.70 16 49 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 LS Contribution 427.11 15.07 6.44 6.44 Total: -1.00 -36.14 427.11 -7.72 -43.86 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -7.24 Total: -1.07 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: -0.36 Total: 15.34 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.18 Total: -43.41 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -1.71 Total: -37.63 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -36.14 -7.72 -43.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002631505.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.734 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds