Wall clock time and date at job start Tue Mar 31 2020 06:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35815 * 116.99988 * 2 1 4 4 C 1.38534 * 120.13438 * 359.97438 * 3 2 1 5 5 C 1.38216 * 120.08851 * 180.02562 * 4 3 2 6 6 C 1.38443 * 120.36731 * 359.97438 * 5 4 3 7 7 C 1.37920 * 120.27084 * 359.67801 * 6 5 4 8 8 C 1.39608 * 119.89743 * 0.62348 * 7 6 5 9 9 C 1.47656 * 120.17849 * 179.67327 * 8 7 6 10 10 N 1.31561 * 126.46616 * 227.02485 * 9 8 7 11 11 N 1.28501 * 110.02080 * 180.29484 * 10 9 8 12 12 C 1.31554 * 110.10035 * 359.72256 * 11 10 9 13 13 S 1.76193 * 126.40793 * 179.97438 * 12 11 10 14 14 C 1.76207 * 99.99847 * 0.04446 * 13 12 11 15 15 H 1.07996 * 119.99708 * 359.97438 * 14 13 12 16 16 C 1.38619 * 119.99796 * 179.97438 * 14 13 12 17 17 N 1.31658 * 120.00291 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99614 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46940 * 60.00356 * 18 16 14 20 20 H 1.48500 * 109.46945 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47351 * 300.00083 * 18 16 14 22 22 N 1.37055 * 107.18743 * 0.02562 * 12 11 10 23 23 C 1.40140 * 127.19325 * 180.02562 * 22 12 11 24 24 C 1.38846 * 120.06510 * 246.56734 * 23 22 12 25 25 C 1.38121 * 119.92893 * 179.71700 * 24 23 22 26 26 C 1.38285 * 120.06568 * 0.57585 * 25 24 23 27 27 C 1.50706 * 119.92961 * 179.69594 * 26 25 24 28 28 C 1.38273 * 120.13824 * 359.68166 * 26 25 24 29 29 C 1.38119 * 120.06661 * 0.03615 * 28 26 25 30 30 H 1.08998 * 109.46920 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46873 * 299.99309 * 1 2 3 32 32 H 1.08996 * 109.47116 * 59.99671 * 1 2 3 33 33 H 1.07994 * 119.95534 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.81179 * 179.97438 * 5 4 3 35 35 H 1.07997 * 119.86539 * 180.02562 * 6 5 4 36 36 H 1.07995 * 120.04843 * 180.29746 * 7 6 5 37 37 H 0.97001 * 120.00120 * 180.02562 * 17 16 14 38 38 H 1.07998 * 120.03499 * 359.97438 * 24 23 22 39 39 H 1.07996 * 119.96713 * 180.28151 * 25 24 23 40 40 H 1.08992 * 109.47172 * 269.98058 * 27 26 25 41 41 H 1.09003 * 109.46620 * 29.98292 * 27 26 25 42 42 H 1.08995 * 109.46767 * 149.98011 * 27 26 25 43 43 H 1.07995 * 119.97201 * 180.02562 * 28 26 25 44 44 H 1.08004 * 120.03662 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.2938 2.3737 -0.0005 5 6 1.9223 3.6047 -0.0011 6 6 3.3044 3.6849 -0.0005 7 6 4.0675 2.5361 0.0072 8 6 3.4444 1.2868 0.0014 9 6 4.2554 0.0529 0.0024 10 7 4.0857 -0.9949 -0.7750 11 7 4.9648 -1.8917 -0.5025 12 6 5.7552 -1.4719 0.4617 13 16 7.1043 -2.3578 1.1684 14 6 7.0237 -3.8428 0.2232 15 1 6.2641 -3.9594 -0.5355 16 6 7.9354 -4.8613 0.4536 17 7 8.8612 -4.7193 1.3789 18 14 7.8496 -6.4358 -0.5479 19 1 8.0243 -6.1168 -1.9877 20 1 8.9268 -7.3598 -0.1109 21 1 6.5291 -7.0828 -0.3409 22 7 5.3323 -0.2168 0.8144 23 6 5.8799 0.6159 1.7997 24 6 5.1455 0.9236 2.9371 25 6 5.6901 1.7398 3.9091 26 6 6.9608 2.2600 3.7447 27 6 7.5495 3.1559 4.8041 28 6 7.6926 1.9597 2.6106 29 6 7.1556 1.1393 1.6377 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 0.2153 2.3189 -0.0005 34 1 1.3318 4.5091 -0.0019 35 1 3.7870 4.6511 -0.0005 36 1 5.1453 2.6029 0.0125 37 1 9.4994 -5.4318 1.5398 38 1 4.1510 0.5218 3.0636 39 1 5.1212 1.9759 4.7962 40 1 7.2943 4.1928 4.5858 41 1 7.1462 2.8797 5.7784 42 1 8.6335 3.0428 4.8142 43 1 8.6848 2.3671 2.4851 44 1 7.7278 0.9047 0.7523 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002646808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:19 Heat of formation + Delta-G solvation = 90.603466 kcal Electronic energy + Delta-G solvation = -30006.418953 eV Core-core repulsion = 26016.591487 eV Total energy + Delta-G solvation = -3989.827466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.09293 -40.00555 -39.26745 -37.37536 -34.79816 -32.63375 -32.30102 -31.26160 -31.02380 -30.27065 -28.79876 -27.29947 -26.60144 -25.66025 -23.58181 -22.93589 -22.40736 -22.08434 -21.11874 -20.35754 -18.57782 -18.03803 -17.24892 -16.30930 -16.01134 -15.79970 -15.69961 -15.43649 -15.19509 -14.90407 -14.68328 -14.45325 -14.09631 -13.87817 -13.77874 -13.56691 -13.50207 -13.02433 -12.77458 -12.40658 -12.30739 -12.05736 -11.80642 -11.71245 -11.33049 -11.21021 -11.17208 -11.15748 -11.09120 -11.00440 -10.56597 -10.23630 -10.02324 -9.84386 -9.74136 -9.17382 -8.99007 -8.80379 -8.70905 -8.45723 -8.12282 -6.70468 -6.43700 -4.17470 0.98900 1.10126 1.33801 1.37196 2.37839 2.52019 3.24806 3.25068 3.25928 3.27925 3.34925 3.51959 3.63013 3.81739 4.05140 4.47530 4.72089 4.77087 4.79253 4.82779 4.95390 4.98233 4.99964 5.07616 5.08495 5.18274 5.21333 5.26590 5.33521 5.43081 5.45721 5.50185 5.58410 5.63917 5.74878 5.85960 5.95946 6.00192 6.15412 6.18922 6.25666 6.33708 6.39529 6.50605 6.54890 6.66189 6.73906 6.82189 7.36246 7.58974 7.60912 8.40391 9.08071 9.48739 10.64337 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.008266 B = 0.003844 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3386.660275 B = 7281.490558 C = 9977.329467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.292 6.292 3 C 0.162 3.838 4 C -0.213 4.213 5 C -0.074 4.074 6 C -0.157 4.157 7 C -0.058 4.058 8 C -0.029 4.029 9 C 0.188 3.812 10 N -0.254 5.254 11 N -0.306 5.306 12 C 0.179 3.821 13 S 0.147 5.853 14 C -0.535 4.535 15 H 0.105 0.895 16 C 0.077 3.923 17 N -0.878 5.878 18 Si 0.932 3.068 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.269 1.269 22 N -0.436 5.436 23 C 0.128 3.872 24 C -0.096 4.096 25 C -0.109 4.109 26 C -0.081 4.081 27 C -0.113 4.113 28 C -0.107 4.107 29 C -0.095 4.095 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.274 0.726 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.131 0.869 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.651 20.202 5.097 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.204 6.204 3 C 0.113 3.887 4 C -0.231 4.231 5 C -0.093 4.093 6 C -0.176 4.176 7 C -0.078 4.078 8 C -0.032 4.032 9 C -0.078 4.078 10 N -0.094 5.094 11 N -0.151 5.151 12 C -0.189 4.189 13 S 0.380 5.620 14 C -0.683 4.683 15 H 0.123 0.877 16 C -0.132 4.132 17 N -0.513 5.513 18 Si 0.757 3.243 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.194 1.194 22 N -0.131 5.131 23 C 0.036 3.964 24 C -0.116 4.116 25 C -0.128 4.128 26 C -0.081 4.081 27 C -0.170 4.170 28 C -0.125 4.125 29 C -0.115 4.115 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.084 0.916 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.149 0.851 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.193 19.154 4.953 21.816 hybrid contribution -0.614 -0.468 -0.595 0.975 sum -9.807 18.686 4.358 21.548 Atomic orbital electron populations 1.23088 0.78753 1.04152 1.00897 1.86311 1.20815 1.25849 1.87411 1.18967 0.90808 0.84809 0.94089 1.21128 1.00003 0.91960 1.10050 1.20984 0.94579 0.96839 0.96853 1.20881 0.93734 0.98026 1.04914 1.21062 0.99980 0.90432 0.96289 1.16735 0.88480 0.89458 1.08554 1.22348 0.92026 0.97638 0.95830 1.74353 1.17628 0.97570 1.19845 1.74781 1.04533 1.21263 1.14488 1.28618 1.04949 0.86099 0.99272 1.83581 1.22013 1.12980 1.43388 1.23197 1.20689 1.00049 1.24413 0.87742 1.25049 0.93839 0.99021 0.95338 1.69955 1.16387 1.34329 1.30674 0.85983 0.78153 0.80106 0.80019 1.19409 1.20802 1.19433 1.43788 1.25906 1.13623 1.29743 1.17491 0.94170 0.95467 0.89248 1.21123 1.00194 0.98178 0.92098 1.20846 0.95243 0.97908 0.98804 1.19993 0.94299 0.97920 0.95865 1.20795 1.01126 0.98317 0.96770 1.20892 0.99963 0.98439 0.93225 1.21240 0.94120 0.95961 1.00195 0.88157 0.92904 0.92630 0.85111 0.85687 0.85582 0.85554 0.91612 0.85767 0.85415 0.91119 0.91434 0.91290 0.85127 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.29 -4.68 9.70 -19.16 -0.19 -4.87 16 3 C 0.16 2.43 6.70 -38.78 -0.26 2.17 16 4 C -0.21 -2.39 9.03 -39.48 -0.36 -2.74 16 5 C -0.07 -0.72 10.03 -39.51 -0.40 -1.12 16 6 C -0.16 -1.68 10.03 -39.62 -0.40 -2.08 16 7 C -0.06 -0.79 9.12 -39.19 -0.36 -1.15 16 8 C -0.03 -0.48 5.69 -104.85 -0.60 -1.08 16 9 C 0.19 3.92 7.04 -153.62 -1.08 2.83 16 10 N -0.25 -6.19 11.92 32.59 0.39 -5.80 16 11 N -0.31 -8.12 11.02 30.82 0.34 -7.78 16 12 C 0.18 4.43 8.02 -87.63 -0.70 3.73 16 13 S 0.15 3.82 21.58 -107.50 -2.32 1.50 16 14 C -0.53 -15.39 9.37 30.87 0.29 -15.10 16 15 H 0.10 3.11 6.92 -52.49 -0.36 2.74 16 16 C 0.08 2.13 5.49 -17.49 -0.10 2.03 16 17 N -0.88 -24.90 13.22 55.48 0.73 -24.17 16 18 Si 0.93 21.73 29.55 -169.99 -5.02 16.71 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 22 N -0.44 -9.08 2.86 -58.11 -0.17 -9.25 16 23 C 0.13 2.19 4.35 -83.61 -0.36 1.83 16 24 C -0.10 -1.43 9.94 -39.40 -0.39 -1.83 16 25 C -0.11 -1.30 9.69 -39.61 -0.38 -1.68 16 26 C -0.08 -0.89 5.88 -104.59 -0.62 -1.50 16 27 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 28 C -0.11 -1.29 9.69 -39.61 -0.38 -1.68 16 29 C -0.10 -1.46 9.95 -39.40 -0.39 -1.85 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 32 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 33 H 0.13 1.12 6.30 -52.49 -0.33 0.79 16 34 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.13 1.71 7.66 -52.49 -0.40 1.31 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 42 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 43 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.13 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 396.33 15.07 5.97 5.97 Total: -1.00 -34.84 396.33 -10.64 -45.48 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.25 Total: 0.67 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -5.13 Total: -18.47 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 1.30 Total: -47.00 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.19 Total: -4.87 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.32 Total: 1.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.84 -10.64 -45.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002646808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.083 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds