Wall clock time and date at job start Tue Mar 31 2020 05:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00257 * 2 1 4 4 H 1.48494 * 109.47228 * 240.00290 * 3 2 1 5 5 H 1.48499 * 109.46767 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47273 * 119.99823 * 3 2 1 7 7 C 1.37878 * 119.99549 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99481 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00526 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47399 * 179.97438 * 9 7 2 11 11 N 1.46495 * 109.47351 * 179.97438 * 10 9 7 12 12 C 1.34372 * 123.87292 * 90.02334 * 11 10 9 13 13 O 1.21288 * 126.44947 * 359.97438 * 12 11 10 14 14 C 1.51393 * 107.11110 * 179.97438 * 12 11 10 15 15 O 1.42903 * 110.50945 * 241.35027 * 14 12 11 16 16 C 1.52999 * 110.51310 * 118.78633 * 14 12 11 17 17 C 1.50700 * 109.47497 * 63.29903 * 16 14 12 18 18 O 1.21210 * 119.99795 * 0.02562 * 17 16 14 19 19 C 1.47552 * 120.00521 * 180.02562 * 17 16 14 20 20 C 1.39539 * 119.74435 * 180.02562 * 19 17 16 21 21 C 1.38569 * 119.03961 * 179.97438 * 20 19 17 22 22 C 1.38637 * 118.50192 * 0.02562 * 21 20 19 23 23 C 1.38659 * 119.38644 * 359.97438 * 22 21 20 24 24 N 1.31453 * 120.92909 * 359.74338 * 23 22 21 25 25 C 1.51131 * 104.07300 * 359.97438 * 14 12 11 26 26 C 1.37677 * 132.85891 * 179.97438 * 25 14 12 27 27 C 1.38394 * 119.91682 * 180.02562 * 26 25 14 28 28 C 1.38298 * 119.82917 * 0.02562 * 27 26 25 29 29 C 1.37941 * 120.36988 * 0.02562 * 28 27 26 30 30 C 1.38904 * 106.33906 * 0.02562 * 25 14 12 31 31 H 0.97003 * 120.00159 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47045 * 59.99647 * 9 7 2 33 33 H 1.08999 * 109.46703 * 299.99613 * 9 7 2 34 34 H 1.09004 * 109.47162 * 59.99437 * 10 9 7 35 35 H 1.09004 * 109.47043 * 300.00081 * 10 9 7 36 36 H 0.96700 * 114.00311 * 298.55020 * 15 14 12 37 37 H 1.09003 * 109.47604 * 183.30116 * 16 14 12 38 38 H 1.09003 * 109.47145 * 303.30187 * 16 14 12 39 39 H 1.08001 * 120.48337 * 0.02562 * 20 19 17 40 40 H 1.07998 * 120.74965 * 180.02562 * 21 20 19 41 41 H 1.07993 * 120.30377 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.53422 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.03963 * 0.03445 * 26 25 14 44 44 H 1.07999 * 120.08267 * 180.02562 * 27 26 25 45 45 H 1.08000 * 119.81520 * 179.97438 * 28 27 26 46 46 H 1.08006 * 119.93285 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 7 1.5127 -4.9309 0.0012 12 6 1.1383 -5.5800 -1.1142 13 8 1.3421 -5.2267 -2.2564 14 6 0.4140 -6.8355 -0.6770 15 8 1.0993 -7.9982 -1.1467 16 6 -1.0299 -6.8252 -1.1828 17 6 -1.0345 -6.8387 -2.6897 18 8 0.0133 -6.8553 -3.2988 19 6 -2.3144 -6.8315 -3.4238 20 6 -2.3123 -6.8446 -4.8191 21 6 -3.5227 -6.8382 -5.4937 22 6 -4.6936 -6.8184 -4.7515 23 6 -4.6214 -6.8063 -3.3669 24 7 -3.4602 -6.8183 -2.7508 25 6 0.4503 -6.7739 0.8326 26 6 -0.0314 -7.6086 1.8158 27 6 0.1554 -7.2852 3.1484 28 6 0.8252 -6.1237 3.4871 29 6 1.3080 -5.2851 2.5040 30 6 1.1246 -5.6044 1.1599 31 1 -0.4850 0.8401 0.0004 32 1 0.6246 -2.5571 -0.8896 33 1 0.6240 -2.5567 0.8903 34 1 2.8719 -3.6044 0.8905 35 1 2.8719 -3.6044 -0.8895 36 1 1.1588 -8.0573 -2.1101 37 1 -1.5519 -7.7066 -0.8100 38 1 -1.5335 -5.9268 -0.8260 39 1 -1.3808 -6.8603 -5.3655 40 1 -3.5533 -6.8484 -6.5732 41 1 -5.6530 -6.8126 -5.2473 42 1 -5.5320 -6.7913 -2.7864 43 1 -0.5542 -8.5147 1.5475 44 1 -0.2210 -7.9383 3.9219 45 1 0.9705 -5.8713 4.5271 46 1 1.8297 -4.3795 2.7764 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002841564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:04 Heat of formation + Delta-G solvation = -33.347877 kcal Electronic energy + Delta-G solvation = -32885.773784 eV Core-core repulsion = 28513.244424 eV Total energy + Delta-G solvation = -4372.529360 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76334 -40.60872 -39.07281 -38.05500 -36.46396 -35.67052 -33.54209 -33.10059 -32.31087 -31.73902 -30.56143 -30.09217 -28.65122 -26.56050 -25.09821 -24.09060 -23.58656 -22.33947 -21.58536 -21.26201 -20.40572 -19.68966 -17.84556 -17.57605 -16.93750 -16.81581 -16.29481 -16.12566 -15.76827 -15.70346 -15.64340 -14.88378 -14.72688 -14.50986 -14.35572 -14.23942 -13.99088 -13.85562 -13.54913 -13.39493 -13.21626 -12.79979 -12.70773 -12.45730 -12.31599 -12.30395 -12.19151 -11.81508 -11.53724 -11.09713 -10.97073 -10.88147 -10.76535 -10.32733 -10.28882 -10.25867 -10.09571 -9.65594 -9.48581 -9.47893 -9.40175 -9.11634 -8.83356 -8.42496 -7.57896 -6.07132 -4.11625 0.24530 0.92901 1.24712 1.47455 2.09600 2.73969 3.13697 3.30352 3.34665 3.37723 3.44499 3.57884 3.92566 4.07459 4.20328 4.26826 4.38011 4.41646 4.50258 4.67655 4.72747 4.83423 4.92448 5.04318 5.10261 5.21273 5.28999 5.35997 5.40722 5.41035 5.60802 5.68395 5.70928 5.72654 5.80751 5.89098 5.99383 6.24477 6.26546 6.31485 6.48166 6.60361 6.63807 6.82941 6.98623 7.10152 7.36138 7.52325 7.55540 7.63646 7.69648 7.89273 8.20803 8.32726 8.93720 9.52828 11.04151 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.007182 B = 0.003496 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3897.740923 B = 8007.911908 C =10389.838728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.014 3.986 10 C 0.109 3.891 11 N -0.543 5.543 12 C 0.499 3.501 13 O -0.467 6.467 14 C 0.160 3.840 15 O -0.532 6.532 16 C -0.162 4.162 17 C 0.405 3.595 18 O -0.411 6.411 19 C 0.053 3.947 20 C -0.113 4.113 21 C -0.085 4.085 22 C -0.148 4.148 23 C 0.095 3.905 24 N -0.443 5.443 25 C -0.147 4.147 26 C -0.045 4.045 27 C -0.158 4.158 28 C -0.074 4.074 29 C -0.141 4.141 30 C 0.178 3.822 31 H 0.263 0.737 32 H 0.020 0.980 33 H 0.022 0.978 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.387 0.613 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.164 0.836 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.213 -19.310 -2.005 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.024 4.024 10 C -0.010 4.010 11 N -0.265 5.265 12 C 0.285 3.715 13 O -0.338 6.338 14 C 0.116 3.884 15 O -0.342 6.342 16 C -0.199 4.199 17 C 0.279 3.721 18 O -0.282 6.282 19 C -0.083 4.083 20 C -0.133 4.133 21 C -0.111 4.111 22 C -0.167 4.167 23 C -0.065 4.065 24 N -0.155 5.155 25 C -0.150 4.150 26 C -0.064 4.064 27 C -0.178 4.178 28 C -0.093 4.093 29 C -0.162 4.162 30 C 0.080 3.920 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.239 0.761 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.182 0.818 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.147 0.853 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.455 -18.989 -1.576 20.846 hybrid contribution 0.119 1.357 -1.539 2.055 sum -8.337 -17.632 -3.115 19.751 Atomic orbital electron populations 1.69963 1.06129 1.26934 1.49918 1.24988 0.94853 0.99329 0.94910 0.86590 0.79550 0.82761 0.78733 1.20111 1.21190 1.20083 1.20990 0.93024 0.90436 1.51941 0.92384 1.19397 0.94204 0.90786 0.97997 1.22171 0.95688 0.80682 1.02462 1.46276 1.52707 1.22934 1.04549 1.21111 0.79727 0.85739 0.84924 1.90807 1.54297 1.70277 1.18455 1.20209 0.90975 0.85771 0.91468 1.86547 1.78373 1.40345 1.28895 1.22388 0.96612 1.07362 0.93588 1.22239 0.86784 0.71913 0.91177 1.90566 1.32605 1.33697 1.71301 1.21636 0.93802 1.01081 0.91776 1.22342 1.00091 0.96273 0.94572 1.21652 0.91958 0.96446 1.01076 1.22460 0.99705 0.98835 0.95742 1.22892 0.95721 0.95607 0.92253 1.67648 0.97947 1.09042 1.40882 1.19329 1.06034 0.97444 0.92225 1.20186 0.97154 0.97659 0.91381 1.20961 1.02920 0.98402 0.95470 1.20903 0.95927 0.93574 0.98861 1.20498 1.04639 1.01864 0.89179 1.18289 0.93978 0.91348 0.88350 0.92784 0.96147 0.95997 0.90706 0.90288 0.76055 0.85925 0.86293 0.83442 0.84058 0.84155 0.81843 0.85629 0.85545 0.85310 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.88 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.01 0.37 5.30 -27.88 -0.15 0.22 16 10 C 0.11 2.41 5.67 -4.04 -0.02 2.39 16 11 N -0.54 -11.02 2.73 -113.25 -0.31 -11.33 16 12 C 0.50 10.22 6.98 -10.83 -0.08 10.14 16 13 O -0.47 -10.81 14.86 -18.25 -0.27 -11.09 16 14 C 0.16 2.64 1.02 -92.37 -0.09 2.55 16 15 O -0.53 -8.44 13.03 -53.58 -0.70 -9.14 16 16 C -0.16 -2.30 4.54 -27.88 -0.13 -2.43 16 17 C 0.40 6.00 6.63 -30.51 -0.20 5.80 16 18 O -0.41 -6.91 11.32 -24.88 -0.28 -7.19 16 19 C 0.05 0.69 6.73 -83.13 -0.56 0.13 16 20 C -0.11 -1.26 9.64 -38.97 -0.38 -1.63 16 21 C -0.09 -0.71 10.17 -39.31 -0.40 -1.11 16 22 C -0.15 -1.09 10.12 -39.28 -0.40 -1.48 16 23 C 0.10 0.86 11.18 -17.56 -0.20 0.66 16 24 N -0.44 -5.37 9.79 -9.88 -0.10 -5.46 16 25 C -0.15 -2.31 5.36 -104.37 -0.56 -2.87 16 26 C -0.05 -0.57 10.03 -39.73 -0.40 -0.97 16 27 C -0.16 -1.78 10.07 -39.50 -0.40 -2.17 16 28 C -0.07 -0.90 10.02 -39.67 -0.40 -1.30 16 29 C -0.14 -2.16 9.74 -39.27 -0.38 -2.54 16 30 C 0.18 3.13 6.69 -83.69 -0.56 2.57 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.49 7.61 -51.93 -0.40 1.10 16 35 H 0.08 1.79 7.95 -51.93 -0.41 1.38 16 36 H 0.39 5.75 6.61 45.56 0.30 6.05 16 37 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.12 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.15 1.58 7.64 -52.49 -0.40 1.18 16 40 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.13 2.01 7.70 -52.48 -0.40 1.60 16 LS Contribution 394.81 15.07 5.95 5.95 Total: -1.00 -35.67 394.81 -10.78 -46.44 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.08 Total: 6.91 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -5.70 Total: -5.58 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.33 Total: -42.96 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -1.25 Total: -27.41 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.67 -10.78 -46.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002841564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.097 kcal (2) G-P(sol) polarization free energy of solvation -35.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds