Wall clock time and date at job start Tue Mar 31 2020 05:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99610 * 2 1 4 4 H 1.48501 * 109.46641 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47213 * 300.00309 * 3 2 1 6 6 H 1.48499 * 109.46997 * 60.00177 * 3 2 1 7 7 C 1.37875 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99658 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00327 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47197 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46860 * 179.97438 * 10 9 7 12 12 C 1.34373 * 123.87734 * 269.97568 * 11 10 9 13 13 O 1.21288 * 126.44170 * 0.02562 * 12 11 10 14 14 C 1.51393 * 107.11571 * 180.02562 * 12 11 10 15 15 O 1.42904 * 110.62724 * 118.69859 * 14 12 11 16 16 C 1.52999 * 110.51304 * 241.35386 * 14 12 11 17 17 C 1.50693 * 109.46774 * 299.64774 * 16 14 12 18 18 O 1.21210 * 120.00329 * 359.97438 * 17 16 14 19 19 C 1.47556 * 119.99565 * 179.97438 * 17 16 14 20 20 C 1.39555 * 119.74214 * 179.72213 * 19 17 16 21 21 C 1.38563 * 119.04075 * 179.74686 * 20 19 17 22 22 C 1.38630 * 118.49866 * 0.52635 * 21 20 19 23 23 C 1.38656 * 119.39360 * 359.73612 * 22 21 20 24 24 N 1.31451 * 120.92464 * 359.97438 * 23 22 21 25 25 C 1.51143 * 104.06693 * 359.97438 * 14 12 11 26 26 C 1.37684 * 132.85183 * 180.34807 * 25 14 12 27 27 C 1.38387 * 119.91384 * 180.16782 * 26 25 14 28 28 C 1.38312 * 119.82571 * 359.44559 * 27 26 25 29 29 C 1.37937 * 120.37395 * 0.28232 * 28 27 26 30 30 C 1.38903 * 106.34117 * 0.02562 * 25 14 12 31 31 H 0.97000 * 120.00086 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.47485 * 59.99716 * 9 7 2 33 33 H 1.09000 * 109.46971 * 300.00096 * 9 7 2 34 34 H 1.08994 * 109.46939 * 60.00369 * 10 9 7 35 35 H 1.09000 * 109.47346 * 299.99998 * 10 9 7 36 36 H 0.96701 * 113.99414 * 65.29448 * 15 14 12 37 37 H 1.09000 * 109.46732 * 59.64504 * 16 14 12 38 38 H 1.08997 * 109.47188 * 179.64628 * 16 14 12 39 39 H 1.08002 * 120.47841 * 0.02780 * 20 19 17 40 40 H 1.08002 * 120.74997 * 180.25843 * 21 20 19 41 41 H 1.08004 * 120.30492 * 179.77044 * 22 21 20 42 42 H 1.07998 * 119.53933 * 180.02562 * 23 22 21 43 43 H 1.08003 * 120.03882 * 359.91705 * 26 25 14 44 44 H 1.08002 * 120.08946 * 179.72774 * 27 26 25 45 45 H 1.07996 * 119.80870 * 180.29748 * 28 27 26 46 46 H 1.07994 * 119.93301 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 7 1.5130 -4.9307 -0.0012 12 6 1.1402 -5.5798 1.1147 13 8 1.3457 -5.2262 2.2566 14 6 0.4153 -6.8353 0.6787 15 8 1.0986 -7.9996 1.1473 16 6 -1.0289 -6.8234 1.1837 17 6 -1.0340 -6.7618 2.6894 18 8 0.0136 -6.7310 3.2983 19 6 -2.3144 -6.7389 3.4225 20 6 -2.3129 -6.6877 4.8171 21 6 -3.5236 -6.6615 5.4905 22 6 -4.6941 -6.6984 4.7486 23 6 -4.6214 -6.7545 3.3651 24 7 -3.4599 -6.7726 2.7498 25 6 0.4483 -6.7731 -0.8311 26 6 -0.0403 -7.6049 -1.8135 27 6 0.1484 -7.2839 -3.1463 28 6 0.8177 -6.1222 -3.4860 29 6 1.3033 -5.2843 -2.5037 30 6 1.1226 -5.6039 -1.1593 31 1 -0.4850 0.8400 0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6249 -2.5570 0.8897 34 1 2.8728 -3.6046 0.8877 35 1 2.8715 -3.6038 -0.8923 36 1 1.1076 -8.0895 2.1101 37 1 -1.5468 -5.9521 0.7827 38 1 -1.5362 -7.7306 0.8554 39 1 -1.3815 -6.6643 5.3634 40 1 -3.5546 -6.6177 6.5692 41 1 -5.6538 -6.6831 5.2437 42 1 -5.5318 -6.7830 2.7848 43 1 -0.5667 -8.5087 -1.5441 44 1 -0.2298 -7.9366 -3.9192 45 1 0.9606 -5.8695 -4.5262 46 1 1.8251 -4.3792 -2.7771 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002841565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:07 Heat of formation + Delta-G solvation = -32.539365 kcal Electronic energy + Delta-G solvation = -32917.801322 eV Core-core repulsion = 28545.307022 eV Total energy + Delta-G solvation = -4372.494300 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.75843 -40.59410 -39.05518 -38.03089 -36.49413 -35.65672 -33.54331 -33.08915 -32.30340 -31.73161 -30.55813 -30.08457 -28.64604 -26.55703 -25.09512 -24.08152 -23.57980 -22.33522 -21.58381 -21.26443 -20.39198 -19.66498 -17.85112 -17.54473 -16.94295 -16.81311 -16.29592 -16.11390 -15.77292 -15.70359 -15.64564 -14.86038 -14.70302 -14.49869 -14.37206 -14.22918 -13.98970 -13.84816 -13.53141 -13.39079 -13.21219 -12.78911 -12.69182 -12.46396 -12.32931 -12.29908 -12.17222 -11.78602 -11.53511 -11.10204 -11.00600 -10.86653 -10.75899 -10.31732 -10.28533 -10.25579 -10.10048 -9.65695 -9.47918 -9.47256 -9.36224 -9.07838 -8.82952 -8.43253 -7.57125 -6.07514 -4.11784 0.26020 0.93827 1.25018 1.47748 2.11310 2.75035 3.14488 3.27791 3.35465 3.39770 3.45663 3.59009 3.93000 4.07735 4.21931 4.27087 4.37734 4.41540 4.51001 4.68578 4.73750 4.82892 4.92526 5.04589 5.10444 5.21698 5.28834 5.35567 5.41187 5.41820 5.61025 5.68180 5.71747 5.73026 5.81820 5.89536 5.99513 6.24961 6.27540 6.31911 6.48362 6.60583 6.64159 6.83409 6.99181 7.13080 7.36768 7.50002 7.56051 7.63301 7.69910 7.89394 8.21648 8.33901 8.94091 9.52826 11.03852 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.007106 B = 0.003547 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3939.559083 B = 7892.676841 C =10316.041185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.110 3.890 11 N -0.544 5.544 12 C 0.500 3.500 13 O -0.464 6.464 14 C 0.160 3.840 15 O -0.530 6.530 16 C -0.162 4.162 17 C 0.399 3.601 18 O -0.405 6.405 19 C 0.053 3.947 20 C -0.113 4.113 21 C -0.085 4.085 22 C -0.148 4.148 23 C 0.095 3.905 24 N -0.444 5.444 25 C -0.148 4.148 26 C -0.045 4.045 27 C -0.159 4.159 28 C -0.074 4.074 29 C -0.141 4.141 30 C 0.178 3.822 31 H 0.261 0.739 32 H 0.022 0.978 33 H 0.020 0.980 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.386 0.614 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.164 0.836 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.218 -19.255 2.039 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.010 4.010 11 N -0.265 5.265 12 C 0.285 3.715 13 O -0.335 6.335 14 C 0.115 3.885 15 O -0.339 6.339 16 C -0.200 4.200 17 C 0.273 3.727 18 O -0.275 6.275 19 C -0.082 4.082 20 C -0.133 4.133 21 C -0.111 4.111 22 C -0.168 4.168 23 C -0.065 4.065 24 N -0.156 5.156 25 C -0.151 4.151 26 C -0.064 4.064 27 C -0.178 4.178 28 C -0.093 4.093 29 C -0.162 4.162 30 C 0.081 3.919 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.237 0.763 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.181 0.819 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.411 -18.926 1.610 20.774 hybrid contribution 0.050 1.388 1.532 2.068 sum -8.360 -17.539 3.142 19.682 Atomic orbital electron populations 1.69987 1.06129 1.26702 1.50144 1.24996 0.94850 0.99355 0.94940 0.86478 0.80111 0.83449 0.77649 1.19589 1.20886 1.20921 1.21064 0.93098 0.90408 1.51623 0.92276 1.19408 0.94221 0.90835 0.97998 1.22162 0.95676 0.80684 1.02453 1.46282 1.52743 1.22949 1.04556 1.21087 0.79777 0.85721 0.84910 1.90814 1.54044 1.70210 1.18422 1.20221 0.90972 0.85786 0.91478 1.86560 1.77765 1.40982 1.28573 1.22400 0.96548 1.07366 0.93694 1.22259 0.86858 0.72410 0.91206 1.90634 1.32493 1.33161 1.71203 1.21657 0.93819 1.00988 0.91771 1.22345 1.00088 0.96279 0.94604 1.21649 0.91963 0.96424 1.01079 1.22455 0.99697 0.98887 0.95752 1.22886 0.95713 0.95646 0.92246 1.67642 0.97950 1.09178 1.40803 1.19331 1.06028 0.97517 0.92224 1.20185 0.97123 0.97678 0.91391 1.20961 1.02950 0.98414 0.95464 1.20904 0.95931 0.93558 0.98863 1.20495 1.04649 1.01882 0.89190 1.18292 0.93920 0.91340 0.88368 0.92904 0.96006 0.96139 0.90303 0.90712 0.76296 0.86268 0.85944 0.83449 0.84071 0.84175 0.81867 0.85636 0.85552 0.85319 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.35 5.30 -27.89 -0.15 0.20 16 10 C 0.11 2.42 5.67 -4.04 -0.02 2.40 16 11 N -0.54 -11.04 2.73 -113.25 -0.31 -11.35 16 12 C 0.50 10.22 6.97 -10.83 -0.08 10.15 16 13 O -0.46 -10.75 14.56 -18.87 -0.27 -11.02 16 14 C 0.16 2.62 1.02 -92.37 -0.09 2.53 16 15 O -0.53 -8.32 13.08 -51.45 -0.67 -9.00 16 16 C -0.16 -2.30 4.55 -27.89 -0.13 -2.42 16 17 C 0.40 5.93 6.60 -30.51 -0.20 5.73 16 18 O -0.41 -6.87 11.22 -24.61 -0.28 -7.15 16 19 C 0.05 0.70 6.73 -83.12 -0.56 0.14 16 20 C -0.11 -1.27 9.64 -38.97 -0.38 -1.65 16 21 C -0.09 -0.72 10.17 -39.32 -0.40 -1.12 16 22 C -0.15 -1.10 10.12 -39.28 -0.40 -1.50 16 23 C 0.10 0.86 11.18 -17.56 -0.20 0.66 16 24 N -0.44 -5.38 9.79 -9.88 -0.10 -5.48 16 25 C -0.15 -2.32 5.35 -104.36 -0.56 -2.88 16 26 C -0.05 -0.57 10.04 -39.73 -0.40 -0.97 16 27 C -0.16 -1.78 10.07 -39.50 -0.40 -2.18 16 28 C -0.07 -0.90 10.02 -39.66 -0.40 -1.30 16 29 C -0.14 -2.17 9.74 -39.27 -0.38 -2.55 16 30 C 0.18 3.14 6.69 -83.69 -0.56 2.58 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.79 7.95 -51.93 -0.41 1.38 16 35 H 0.07 1.49 7.62 -51.93 -0.40 1.10 16 36 H 0.39 5.56 6.82 45.56 0.31 5.87 16 37 H 0.12 1.78 8.14 -51.93 -0.42 1.36 16 38 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.15 1.61 7.64 -52.49 -0.40 1.21 16 40 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 42 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 44 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 46 H 0.13 2.01 7.70 -52.49 -0.40 1.60 16 LS Contribution 394.63 15.07 5.95 5.95 Total: -1.00 -35.85 394.63 -10.74 -46.59 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.07 Total: 6.67 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -5.70 Total: -5.67 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.33 Total: -43.03 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -1.22 Total: -27.17 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.85 -10.74 -46.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002841565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.050 kcal (2) G-P(sol) polarization free energy of solvation -35.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds