Wall clock time and date at job start Tue Mar 31 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00159 * 2 1 4 4 H 1.48501 * 109.46953 * 270.00495 * 3 2 1 5 5 H 1.48495 * 109.46815 * 30.00138 * 3 2 1 6 6 H 1.48500 * 109.47061 * 150.00366 * 3 2 1 7 7 C 1.37875 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00355 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00162 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47394 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99865 * 269.99821 * 10 9 7 12 12 O 1.21292 * 119.99791 * 184.73687 * 11 10 9 13 13 C 1.50695 * 120.00262 * 4.73543 * 11 10 9 14 14 O 1.45198 * 109.47330 * 179.97438 * 13 11 10 15 15 C 1.34226 * 116.99776 * 179.97438 * 14 13 11 16 16 O 1.20820 * 120.00348 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99697 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47307 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47613 * 179.97438 * 18 17 15 20 20 C 1.38239 * 120.00231 * 269.73324 * 19 18 17 21 21 C 1.38230 * 120.00033 * 179.76239 * 20 19 18 22 22 C 1.38238 * 120.00248 * 0.50618 * 21 20 19 23 23 C 1.38236 * 119.99554 * 359.74407 * 22 21 20 24 24 C 1.38233 * 119.99922 * 89.99897 * 19 18 17 25 25 C 1.39932 * 120.00082 * 89.99699 * 10 9 7 26 26 C 1.38867 * 120.06969 * 247.89732 * 25 10 9 27 27 C 1.38113 * 119.93011 * 179.97438 * 26 25 10 28 28 C 1.38283 * 120.06773 * 359.97438 * 27 26 25 29 29 C 1.38283 * 120.14290 * 0.04580 * 28 27 26 30 30 C 1.38113 * 120.06820 * 359.94780 * 29 28 27 31 31 H 0.96993 * 119.99919 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47135 * 59.99624 * 9 7 2 33 33 H 1.09009 * 109.46819 * 299.99805 * 9 7 2 34 34 H 1.08999 * 109.47279 * 300.00614 * 13 11 10 35 35 H 1.09000 * 109.46739 * 59.99911 * 13 11 10 36 36 H 1.08996 * 109.47550 * 300.00175 * 17 15 14 37 37 H 1.09002 * 109.47204 * 59.99903 * 17 15 14 38 38 H 1.08996 * 109.47041 * 300.00588 * 18 17 15 39 39 H 1.09010 * 109.46878 * 60.00175 * 18 17 15 40 40 H 1.08005 * 119.99678 * 359.97438 * 20 19 18 41 41 H 1.08003 * 120.00066 * 180.22425 * 21 20 19 42 42 H 1.07997 * 119.99928 * 179.72169 * 22 21 20 43 43 H 1.07998 * 119.99754 * 179.97438 * 23 22 21 44 44 H 1.07995 * 119.99989 * 0.02562 * 24 19 18 45 45 H 1.08001 * 120.03470 * 359.70272 * 26 25 10 46 46 H 1.08001 * 119.96462 * 179.97438 * 27 26 25 47 47 H 1.08001 * 119.92786 * 179.97438 * 28 27 26 48 48 H 1.08001 * 119.96455 * 179.97438 * 29 28 27 49 49 H 1.08005 * 120.03372 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5753 -0.0001 11 6 4.2241 -3.2109 1.1671 12 8 4.7091 -4.3226 1.1688 13 6 3.8722 -2.5403 2.4700 14 8 4.2061 -3.4224 3.5739 15 6 3.9533 -2.9709 4.8125 16 8 3.4685 -1.8754 4.9690 17 6 4.2740 -3.8307 6.0079 18 6 3.8921 -3.0862 7.2888 19 6 4.2123 -3.9462 8.4842 20 6 3.2604 -4.8138 8.9863 21 6 3.5558 -5.6062 10.0798 22 6 4.7994 -5.5234 10.6777 23 6 5.7494 -4.6520 10.1788 24 6 5.4559 -3.8634 9.0820 25 6 4.2335 -3.2347 -1.2120 26 6 3.4304 -4.3030 -1.5889 27 6 3.6632 -4.9514 -2.7859 28 6 4.6945 -4.5375 -3.6090 29 6 5.4963 -3.4743 -3.2363 30 6 5.2685 -2.8217 -2.0406 31 1 -0.4850 0.8400 0.0004 32 1 3.8746 -0.6809 0.8905 33 1 3.8752 -0.6797 -0.8896 34 1 4.4342 -1.6112 2.5638 35 1 2.8044 -2.3225 2.4896 36 1 3.7112 -4.7622 5.9471 37 1 5.3414 -4.0514 6.0208 38 1 4.4553 -2.1550 7.3494 39 1 2.8248 -2.8652 7.2761 40 1 2.2872 -4.8751 8.5221 41 1 2.8134 -6.2867 10.4699 42 1 5.0285 -6.1392 11.5348 43 1 6.7209 -4.5870 10.6461 44 1 6.1979 -3.1821 8.6927 45 1 2.6273 -4.6293 -0.9447 46 1 3.0392 -5.7826 -3.0795 47 1 4.8748 -5.0465 -4.5443 48 1 6.3012 -3.1538 -3.8810 49 1 5.8949 -1.9911 -1.7502 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003219230.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:01 Heat of formation + Delta-G solvation = -66.037527 kcal Electronic energy + Delta-G solvation = -31465.318809 eV Core-core repulsion = 27129.486352 eV Total energy + Delta-G solvation = -4335.832457 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.57532 -39.90349 -39.42006 -38.03368 -36.32884 -35.23920 -34.30680 -32.67591 -31.14417 -30.62335 -30.59155 -30.04385 -28.29541 -27.45430 -25.10305 -22.95024 -22.83078 -22.43320 -21.97134 -21.43407 -20.42638 -19.16732 -17.83977 -17.23456 -17.01324 -16.75376 -16.63652 -16.53215 -15.90709 -15.56271 -15.53597 -15.16598 -15.04280 -14.32448 -14.23885 -14.09843 -13.68967 -13.49232 -13.40973 -13.35491 -13.09869 -12.99949 -12.66068 -12.45319 -12.31758 -12.24808 -12.09046 -11.95407 -11.54724 -11.47409 -11.27146 -11.18018 -11.07757 -10.89309 -10.75627 -10.49425 -10.42981 -10.38427 -9.75290 -9.42815 -9.17902 -8.97640 -8.80159 -8.74733 -8.59695 -7.83606 -6.29337 -4.33203 1.06448 1.14355 1.62583 1.74397 2.30780 2.52173 2.98245 3.14105 3.20203 3.23227 3.50746 3.67252 4.11127 4.20099 4.49827 4.57447 4.72816 4.75213 4.87604 4.89885 4.94742 5.01632 5.07122 5.22248 5.25053 5.26334 5.26693 5.33361 5.39195 5.43296 5.59511 5.70671 5.71288 5.73998 5.81884 5.87633 5.89649 5.92662 6.20433 6.25622 6.29224 6.35149 6.38444 6.43842 6.56013 6.66550 6.74604 6.79954 6.87424 7.02693 7.30054 7.43946 7.77103 7.86233 8.24660 8.59781 8.74862 9.27958 10.82883 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.009573 B = 0.002148 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.228793 B =13034.501890 C =15019.549398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.081 3.919 3 Si 0.870 3.130 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.206 3.794 10 N -0.552 5.552 11 C 0.527 3.473 12 O -0.533 6.533 13 C 0.054 3.946 14 O -0.338 6.338 15 C 0.458 3.542 16 O -0.503 6.503 17 C -0.105 4.105 18 C -0.071 4.071 19 C -0.081 4.081 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.115 4.115 25 C 0.171 3.829 26 C -0.100 4.100 27 C -0.112 4.112 28 C -0.131 4.131 29 C -0.114 4.114 30 C -0.125 4.125 31 H 0.268 0.732 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.784 -8.554 11.876 18.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.124 4.124 3 Si 0.696 3.304 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.099 0.901 9 C 0.086 3.914 10 N -0.281 5.281 11 C 0.315 3.685 12 O -0.410 6.410 13 C -0.022 4.022 14 O -0.253 6.253 15 C 0.300 3.700 16 O -0.391 6.391 17 C -0.142 4.142 18 C -0.109 4.109 19 C -0.081 4.081 20 C -0.132 4.132 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.133 4.133 25 C 0.081 3.919 26 C -0.120 4.120 27 C -0.130 4.130 28 C -0.150 4.150 29 C -0.133 4.133 30 C -0.144 4.144 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.117 0.883 35 H 0.139 0.861 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.709 -8.644 11.929 18.212 hybrid contribution 0.064 1.254 -0.117 1.261 sum 10.772 -7.390 11.811 17.611 Atomic orbital electron populations 1.69873 1.06211 1.27431 1.48587 1.24839 0.94764 0.98897 0.93879 0.86939 0.80503 0.83964 0.78964 1.19741 1.20594 1.18804 1.21266 0.88499 0.95301 1.53576 0.90123 1.20047 0.96572 0.76551 0.98229 1.45452 1.64108 1.16007 1.02500 1.19902 0.78184 0.85785 0.84664 1.90690 1.43491 1.19462 1.87313 1.22818 1.04786 0.91993 0.82610 1.86468 1.76714 1.47338 1.14778 1.23714 0.75196 0.86502 0.84540 1.90714 1.40146 1.21688 1.86539 1.21339 1.05042 0.99086 0.88775 1.20441 1.03739 0.97365 0.89335 1.19847 0.94158 0.97290 0.96815 1.21140 0.99382 0.96025 0.96676 1.21166 0.96956 0.99285 0.96293 1.21165 0.93936 0.99094 1.00140 1.21155 0.99400 0.96509 0.96708 1.21113 0.96345 0.99601 0.96250 1.17496 0.94096 0.93654 0.86675 1.21271 0.98329 0.95870 0.96522 1.20974 0.98015 0.99812 0.94246 1.21053 0.96430 0.97768 0.99707 1.20897 0.99819 0.96398 0.96195 1.21172 0.96944 1.00976 0.95347 0.92145 0.94429 0.94433 0.88319 0.86112 0.87403 0.87522 0.89778 0.89642 0.85794 0.86053 0.86237 0.86104 0.85907 0.85994 0.86065 0.86354 0.86122 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.48 13.96 55.43 0.77 -24.71 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.87 19.72 27.47 -169.99 -4.67 15.06 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 7 C -0.55 -14.24 9.71 -34.44 -0.33 -14.58 16 8 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 9 C 0.21 4.50 3.95 -5.19 -0.02 4.48 16 10 N -0.55 -11.47 2.51 -114.74 -0.29 -11.76 16 11 C 0.53 10.92 7.61 -10.99 -0.08 10.83 16 12 O -0.53 -12.04 16.26 -14.11 -0.23 -12.26 16 13 C 0.05 1.02 4.61 36.00 0.17 1.19 16 14 O -0.34 -5.89 9.75 -45.89 -0.45 -6.34 16 15 C 0.46 6.92 7.96 36.01 0.29 7.21 16 16 O -0.50 -8.93 15.73 -18.75 -0.29 -9.23 16 17 C -0.10 -1.10 5.79 -27.88 -0.16 -1.26 16 18 C -0.07 -0.71 4.64 -27.88 -0.13 -0.84 16 19 C -0.08 -0.75 5.13 -104.63 -0.54 -1.29 16 20 C -0.11 -1.01 9.70 -39.58 -0.38 -1.39 16 21 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 22 C -0.13 -0.96 10.05 -39.58 -0.40 -1.36 16 23 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 24 C -0.12 -0.99 9.70 -39.58 -0.38 -1.37 16 25 C 0.17 3.37 4.75 -83.69 -0.40 2.98 16 26 C -0.10 -1.89 9.55 -39.39 -0.38 -2.26 16 27 C -0.11 -1.73 10.04 -39.61 -0.40 -2.13 16 28 C -0.13 -1.83 10.04 -39.55 -0.40 -2.23 16 29 C -0.11 -1.64 10.04 -39.61 -0.40 -2.04 16 30 C -0.12 -2.12 9.69 -39.39 -0.38 -2.50 16 31 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.04 0.79 5.53 -51.93 -0.29 0.50 16 33 H 0.04 0.80 7.29 -51.92 -0.38 0.43 16 34 H 0.10 1.72 7.25 -51.93 -0.38 1.35 16 35 H 0.12 2.43 7.91 -51.93 -0.41 2.02 16 36 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 39 H 0.08 0.89 8.04 -51.92 -0.42 0.48 16 40 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 41 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 46 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 47 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 48 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 49 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 422.24 15.07 6.36 6.36 Total: -1.00 -32.67 422.24 -10.96 -43.64 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.95 Total: 6.42 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -5.22 Total: -7.18 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.49 Total: -36.47 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.97 Total: -27.83 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.67 Total: 15.06 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -32.67 -10.96 -43.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003219230.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.400 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds