Wall clock time and date at job start Tue Mar 31 2020 05:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99788 * 2 1 4 4 H 1.48506 * 109.47108 * 269.99640 * 3 2 1 5 5 H 1.48501 * 109.47677 * 29.99916 * 3 2 1 6 6 H 1.48507 * 109.46795 * 149.99970 * 3 2 1 7 7 C 1.37874 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00066 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00405 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47890 * 179.97438 * 9 7 2 11 11 C 1.33919 * 125.06742 * 124.99456 * 10 9 7 12 12 C 1.38930 * 107.75602 * 179.97438 * 11 10 9 13 13 C 1.41444 * 126.92979 * 180.02562 * 12 11 10 14 14 C 1.38816 * 120.00315 * 314.42141 * 13 12 11 15 15 C 1.47535 * 121.50544 * 170.33792 * 14 13 12 16 16 O 1.21695 * 121.10370 * 0.04126 * 15 14 13 17 17 N 1.35029 * 117.78948 * 180.02562 * 15 14 13 18 18 C 1.34110 * 121.07537 * 359.97438 * 17 15 14 19 19 O 1.21831 * 118.20440 * 179.97438 * 18 17 15 20 20 N 1.33054 * 123.58937 * 0.02562 * 18 17 15 21 21 C 1.32245 * 122.07084 * 359.97438 * 20 18 17 22 22 O 1.34964 * 120.76365 * 179.72697 * 21 20 18 23 23 C 1.47049 * 106.14465 * 0.26375 * 12 11 10 24 24 C 1.48214 * 126.54300 * 179.69642 * 23 12 11 25 25 C 1.39429 * 120.12913 * 324.72768 * 24 23 12 26 26 C 1.37998 * 119.86310 * 179.74350 * 25 24 23 27 27 C 1.38338 * 120.13104 * 0.53117 * 26 25 24 28 28 C 1.38335 * 120.26085 * 359.74414 * 27 26 25 29 29 C 1.37994 * 120.13405 * 359.97438 * 28 27 26 30 30 N 1.31251 * 106.91286 * 359.55810 * 23 12 11 31 31 H 0.97002 * 119.99768 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.47170 * 59.99564 * 9 7 2 33 33 H 1.09008 * 109.46956 * 300.00044 * 9 7 2 34 34 H 1.07998 * 126.12423 * 359.97438 * 11 10 9 35 35 H 1.08002 * 119.99911 * 134.41927 * 13 12 11 36 36 H 0.97002 * 119.46538 * 179.97438 * 17 15 14 37 37 H 0.96706 * 113.99740 * 355.01337 * 22 21 20 38 38 H 1.07999 * 120.06730 * 0.02562 * 25 24 23 39 39 H 1.07998 * 119.92901 * 180.29636 * 26 25 24 40 40 H 1.08002 * 119.86647 * 179.76280 * 27 26 25 41 41 H 1.08000 * 119.93524 * 180.02562 * 28 27 26 42 42 H 1.07990 * 120.06932 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2252 -4.6060 0.8985 12 6 3.2668 -5.4604 0.5595 13 6 3.6519 -6.6413 1.2362 14 6 3.7586 -6.6448 2.6202 15 6 3.9500 -7.8976 3.3756 16 8 4.0212 -8.9706 2.8059 17 7 4.0439 -7.8140 4.7200 18 6 3.9662 -6.6311 5.3471 19 8 4.0571 -6.6164 6.5620 20 7 3.7944 -5.4728 4.7153 21 6 3.6861 -5.4002 3.3993 22 8 3.5068 -4.2114 2.7860 23 6 3.8921 -4.8866 -0.6414 24 6 5.0542 -5.4358 -1.3794 25 6 6.0847 -6.0722 -0.6887 26 6 7.1615 -6.5862 -1.3819 27 6 7.2251 -6.4613 -2.7582 28 6 6.2085 -5.8258 -3.4482 29 6 5.1238 -5.3129 -2.7666 30 7 3.2228 -3.7968 -0.9367 31 1 -0.4850 0.8401 -0.0004 32 1 0.6247 -2.5571 -0.8897 33 1 0.6241 -2.5567 0.8904 34 1 1.5535 -4.7221 1.7362 35 1 3.8628 -7.5403 0.6761 36 1 4.1696 -8.6227 5.2407 37 1 3.3928 -3.4683 3.3942 38 1 6.0380 -6.1668 0.3861 39 1 7.9580 -7.0837 -0.8485 40 1 8.0718 -6.8618 -3.2960 41 1 6.2633 -5.7316 -4.5227 42 1 4.3305 -4.8173 -3.3063 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003239372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:40 Heat of formation + Delta-G solvation = 38.804469 kcal Electronic energy + Delta-G solvation = -32038.786789 eV Core-core repulsion = 27565.845846 eV Total energy + Delta-G solvation = -4472.940943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.116 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.67524 -40.92587 -39.01292 -38.84314 -38.63775 -35.38175 -34.78722 -33.81681 -33.25521 -32.65732 -31.03095 -30.46381 -29.40975 -27.48390 -25.27037 -24.12199 -24.03875 -23.09719 -22.57933 -21.96619 -20.36809 -20.17236 -19.46005 -18.23073 -17.99820 -17.10325 -16.86442 -16.49407 -16.26593 -15.89045 -15.44560 -15.19194 -15.07992 -15.01533 -14.62011 -14.54186 -14.34180 -14.01958 -14.00574 -13.66610 -13.47444 -13.30099 -13.06287 -12.76892 -12.45794 -12.06853 -11.45770 -11.25631 -11.24990 -11.16578 -11.06630 -10.91536 -10.60457 -10.50710 -10.36665 -10.24878 -10.14705 -10.00440 -9.58953 -9.44934 -9.03951 -8.86139 -8.54168 -7.91658 -6.49893 -4.57291 -0.24194 0.97663 1.31389 1.46523 2.06092 2.32135 2.61454 2.78702 2.87533 3.05384 3.09564 3.17175 3.21104 3.75348 3.80681 3.84744 4.10317 4.28055 4.50955 4.62318 4.63243 4.86320 4.86814 4.88652 5.00343 5.13954 5.19920 5.32984 5.38294 5.53661 5.65885 5.70342 5.85405 5.93908 5.94934 6.18647 6.32337 6.35171 6.39449 6.47997 6.60962 6.74271 6.85341 6.94312 7.21550 7.37756 7.47974 7.54115 7.78710 7.95918 8.09553 8.49594 9.10901 10.58943 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.006504 B = 0.003973 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4303.699119 B = 7046.093036 C =10360.804578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.247 3.753 10 N -0.300 5.300 11 C 0.164 3.836 12 C -0.309 4.309 13 C 0.215 3.785 14 C -0.319 4.319 15 C 0.581 3.419 16 O -0.508 6.508 17 N -0.690 5.690 18 C 0.687 3.313 19 O -0.522 6.522 20 N -0.632 5.632 21 C 0.502 3.498 22 O -0.419 6.419 23 C 0.140 3.860 24 C -0.010 4.010 25 C -0.097 4.097 26 C -0.120 4.120 27 C -0.115 4.115 28 C -0.121 4.121 29 C -0.087 4.087 30 N -0.254 5.254 31 H 0.271 0.729 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.180 0.820 35 H 0.150 0.850 36 H 0.418 0.582 37 H 0.416 0.584 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.228 -12.788 -2.791 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.130 3.870 10 N -0.072 5.072 11 C 0.007 3.993 12 C -0.321 4.321 13 C 0.192 3.808 14 C -0.327 4.327 15 C 0.372 3.628 16 O -0.383 6.383 17 N -0.360 5.360 18 C 0.388 3.612 19 O -0.396 6.396 20 N -0.390 5.390 21 C 0.295 3.705 22 O -0.213 6.213 23 C -0.028 4.028 24 C -0.012 4.012 25 C -0.117 4.117 26 C -0.138 4.138 27 C -0.133 4.133 28 C -0.139 4.139 29 C -0.106 4.106 30 N -0.072 5.072 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.197 0.803 35 H 0.167 0.833 36 H 0.257 0.743 37 H 0.276 0.724 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.852 -11.513 -3.264 14.313 hybrid contribution 0.333 -0.093 0.903 0.967 sum 8.186 -11.606 -2.361 14.397 Atomic orbital electron populations 1.69894 1.06110 1.28134 1.48611 1.24918 0.94981 0.99670 0.94083 0.86298 0.79673 0.81842 0.78590 1.20191 1.20826 1.19552 1.21111 0.93982 0.88774 1.53613 0.90999 1.20078 0.85596 0.81157 1.00122 1.49393 1.22279 1.18380 1.17137 1.23152 0.97454 0.86078 0.92657 1.19055 1.06884 1.02726 1.03407 1.21655 0.72696 0.95431 0.91057 1.21133 1.27024 0.90013 0.94581 1.17975 0.74807 0.88511 0.81483 1.90890 1.48596 1.29372 1.69478 1.45478 1.68534 1.12962 1.09061 1.16996 0.76660 0.79827 0.87738 1.90956 1.50405 1.86240 1.12024 1.69313 1.35439 1.25985 1.08296 1.21994 0.75788 0.85793 0.86950 1.85411 1.82766 1.15973 1.37182 1.21916 0.95435 0.93512 0.91949 1.17769 0.91902 0.98958 0.92527 1.21168 0.93293 0.97441 0.99792 1.21046 0.98113 1.00220 0.94415 1.21238 0.98659 0.98992 0.94426 1.21104 0.94046 0.98639 1.00087 1.21291 0.98432 0.97881 0.92986 1.77443 1.00224 1.16605 1.12922 0.91973 0.92877 0.92010 0.80283 0.83304 0.74253 0.72399 0.85959 0.85708 0.86006 0.85709 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.67 13.29 55.43 0.74 -21.93 16 2 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.91 19.44 29.54 -169.99 -5.02 14.42 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.54 -12.76 9.20 -34.44 -0.32 -13.08 16 8 H 0.07 1.78 7.81 -52.48 -0.41 1.37 16 9 C 0.25 5.10 6.20 -5.20 -0.03 5.07 16 10 N -0.30 -5.25 3.61 -61.83 -0.22 -5.47 16 11 C 0.16 2.25 8.03 -16.39 -0.13 2.12 16 12 C -0.31 -3.99 4.85 -104.85 -0.51 -4.50 16 13 C 0.22 2.35 7.86 -38.15 -0.30 2.05 16 14 C -0.32 -3.74 6.01 -102.34 -0.61 -4.36 16 15 C 0.58 7.36 7.98 -12.36 -0.10 7.26 16 16 O -0.51 -7.19 17.44 5.19 0.09 -7.10 16 17 N -0.69 -8.74 5.18 -17.16 -0.09 -8.83 16 18 C 0.69 10.58 8.49 -89.04 -0.76 9.83 16 19 O -0.52 -9.65 17.96 5.07 0.09 -9.55 16 20 N -0.63 -9.21 10.30 -15.24 -0.16 -9.36 16 21 C 0.50 6.12 7.82 -13.82 -0.11 6.02 16 22 O -0.42 -4.73 8.48 -16.61 -0.14 -4.87 16 23 C 0.14 2.09 6.95 -80.45 -0.56 1.53 16 24 C -0.01 -0.12 5.83 -104.91 -0.61 -0.74 16 25 C -0.10 -1.08 9.18 -39.23 -0.36 -1.44 16 26 C -0.12 -1.14 10.03 -39.63 -0.40 -1.54 16 27 C -0.11 -1.03 10.04 -39.51 -0.40 -1.43 16 28 C -0.12 -1.19 10.03 -39.64 -0.40 -1.59 16 29 C -0.09 -1.05 9.76 -39.23 -0.38 -1.43 16 30 N -0.25 -4.58 12.24 34.64 0.42 -4.16 16 31 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.24 8.04 -51.92 -0.42 0.82 16 34 H 0.18 1.98 7.58 -52.49 -0.40 1.58 16 35 H 0.15 1.42 7.81 -52.49 -0.41 1.01 16 36 H 0.42 4.53 8.84 -40.82 -0.36 4.16 16 37 H 0.42 3.63 8.99 45.56 0.41 4.04 16 38 H 0.12 1.28 6.90 -52.49 -0.36 0.92 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -30.98 377.76 -7.86 -38.84 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -3.20 Total: 6.99 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -6.07 Total: 5.33 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.69 Total: -49.76 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: 0.04 Total: -21.52 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.98 -7.86 -38.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003239372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.648 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds