Wall clock time and date at job start Tue Mar 31 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00325 * 2 1 4 4 C 1.50699 * 109.47096 * 269.99863 * 3 2 1 5 5 H 1.07997 * 119.99848 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00327 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99802 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00231 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46769 * 90.00103 * 8 6 4 10 10 H 1.48495 * 109.46973 * 210.00006 * 8 6 4 11 11 H 1.48497 * 109.46831 * 329.99975 * 8 6 4 12 12 C 1.34774 * 119.99842 * 179.97438 * 2 1 3 13 13 O 1.21286 * 120.00238 * 180.02562 * 12 2 1 14 14 C 1.50692 * 120.00076 * 0.02562 * 12 2 1 15 15 O 1.45208 * 109.47358 * 179.97438 * 14 12 2 16 16 C 1.34872 * 117.00207 * 180.02562 * 15 14 12 17 17 O 1.21594 * 119.99656 * 359.97438 * 16 15 14 18 18 C 1.46638 * 119.99765 * 180.02562 * 16 15 14 19 19 S 1.75480 * 124.67034 * 0.32186 * 18 16 15 20 20 C 1.75992 * 91.65296 * 180.02562 * 19 18 16 21 21 C 1.39905 * 130.55298 * 179.97438 * 20 19 18 22 22 C 1.37391 * 120.18828 * 179.71482 * 21 20 19 23 23 C 1.38969 * 120.18399 * 0.02562 * 22 21 20 24 24 C 1.35924 * 120.68835 * 359.97438 * 23 22 21 25 25 C 1.40033 * 109.59504 * 359.67296 * 20 19 18 26 26 C 1.33924 * 124.66543 * 180.02562 * 18 16 15 27 27 Cl 1.73600 * 122.24609 * 0.02562 * 26 18 16 28 28 H 1.09000 * 109.47433 * 270.00717 * 1 2 3 29 29 H 1.09006 * 109.46847 * 29.99858 * 1 2 3 30 30 H 1.08997 * 109.47367 * 150.00337 * 1 2 3 31 31 H 1.09003 * 109.47015 * 29.99931 * 3 2 1 32 32 H 1.08997 * 109.47584 * 149.99593 * 3 2 1 33 33 H 0.97001 * 119.99998 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.47118 * 60.00024 * 14 12 2 35 35 H 1.09000 * 109.47611 * 299.99808 * 14 12 2 36 36 H 1.08001 * 119.90144 * 359.68723 * 21 20 19 37 37 H 1.07995 * 119.90865 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.65892 * 179.97438 * 23 22 21 39 39 H 1.08000 * 119.75471 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2416 6 6 3.1261 2.8778 -1.6728 7 7 3.5526 3.6185 -0.6732 8 14 3.4369 3.4174 -3.4340 9 1 2.3065 4.2601 -3.9003 10 1 4.6969 4.2006 -3.4967 11 1 3.5542 2.2204 -4.3050 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3853 -2.4722 0.0005 15 8 2.3289 -3.5760 0.0005 16 6 1.8133 -4.8223 0.0000 17 8 0.6079 -4.9815 0.0000 18 6 2.7066 -5.9852 0.0005 19 16 4.4592 -5.8976 0.0100 20 6 4.5977 -7.6521 0.0037 21 6 5.7290 -8.4752 0.0058 22 6 5.5889 -9.8420 0.0056 23 6 4.3226 -10.4145 0.0028 24 6 3.2089 -9.6353 0.0008 25 6 3.3195 -8.2241 0.0023 26 6 2.2971 -7.2603 -0.0004 27 17 0.6160 -7.6932 -0.0031 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1384 0.5139 33 1 4.0295 4.4444 -0.8505 34 1 0.7590 -2.5302 -0.8897 35 1 0.7583 -2.5298 0.8903 36 1 6.7152 -8.0349 0.0071 37 1 6.4652 -10.4731 0.0068 38 1 4.2224 -11.4899 0.0023 39 1 2.2323 -10.0963 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003317665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:46 Heat of formation + Delta-G solvation = -63.600316 kcal Electronic energy + Delta-G solvation = -26688.986431 eV Core-core repulsion = 22521.913492 eV Total energy + Delta-G solvation = -4167.072939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 367.048 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.70788 -40.08061 -38.86843 -37.27086 -36.37838 -35.24386 -34.87775 -32.68294 -31.54950 -30.57619 -29.22371 -27.35991 -25.82894 -25.11433 -23.84650 -22.80194 -21.98491 -20.42636 -19.17621 -18.80039 -17.60611 -16.95821 -16.84935 -16.51026 -16.44625 -15.91125 -15.79649 -15.25515 -14.97457 -14.84275 -14.39571 -14.32049 -14.26245 -13.83917 -13.25973 -13.05860 -12.57966 -12.56341 -12.37477 -12.26041 -12.13028 -11.95520 -11.89687 -11.52347 -11.29115 -11.24507 -11.03485 -10.96146 -10.75033 -10.62777 -10.56520 -10.19185 -10.07811 -9.67745 -9.14201 -9.05371 -8.46744 -8.14259 -7.76849 -6.07706 -4.12754 -0.33379 0.72192 0.75864 1.24059 1.29218 2.04626 2.21290 2.47819 3.15774 3.20801 3.28996 3.35831 3.40850 3.76580 4.12181 4.31719 4.39243 4.42452 4.60829 4.77478 4.83874 4.87206 5.02625 5.06432 5.18359 5.18564 5.27129 5.41682 5.57619 5.59975 5.79011 5.84939 5.94503 6.11472 6.14945 6.28724 6.94259 7.35886 7.40920 7.48870 7.88044 8.17582 8.24415 8.80742 8.95705 9.52323 11.00456 Molecular weight = 367.05amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.002140 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.221414 B =13083.653844 C =14222.570281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.597 5.597 3 C 0.247 3.753 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.506 3.494 13 O -0.518 6.518 14 C 0.053 3.947 15 O -0.323 6.323 16 C 0.532 3.468 17 O -0.477 6.477 18 C -0.215 4.215 19 S 0.233 5.767 20 C -0.136 4.136 21 C -0.085 4.085 22 C -0.083 4.083 23 C -0.121 4.121 24 C -0.059 4.059 25 C -0.089 4.089 26 C 0.040 3.960 27 Cl -0.010 7.010 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.264 0.736 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.429 -28.888 3.227 29.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.331 5.331 3 C 0.128 3.872 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.290 3.710 13 O -0.393 6.393 14 C -0.024 4.024 15 O -0.238 6.238 16 C 0.374 3.626 17 O -0.366 6.366 18 C -0.333 4.333 19 S 0.502 5.498 20 C -0.253 4.253 21 C -0.107 4.107 22 C -0.105 4.105 23 C -0.141 4.141 24 C -0.079 4.079 25 C -0.097 4.097 26 C -0.003 4.003 27 Cl 0.019 6.981 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.197 -27.391 3.285 27.588 hybrid contribution -1.296 -0.636 -1.011 1.762 sum -1.492 -28.027 2.274 28.159 Atomic orbital electron populations 1.21746 0.81043 1.02994 1.00876 1.48097 1.06389 1.07173 1.71407 1.19368 0.92646 0.77416 0.97760 1.21414 1.36779 1.06392 0.92178 0.92377 1.24938 0.95262 0.96343 0.97550 1.69930 1.38269 1.14298 1.30770 0.86474 0.77707 0.78612 0.84515 1.20610 1.21030 1.19853 1.19659 0.88172 0.84189 0.78984 1.90723 1.13279 1.86677 1.48646 1.23010 0.90952 0.83857 1.04584 1.86624 1.39888 1.13647 1.83614 1.19477 0.86329 0.82666 0.74128 1.90939 1.14523 1.86397 1.44711 1.22495 0.99676 0.93947 1.17204 1.85028 0.95050 0.96705 1.72972 1.23173 0.96781 0.99201 1.06122 1.20543 0.96512 0.92991 1.00704 1.21223 0.97970 0.94168 0.97170 1.20751 0.92101 1.00417 1.00795 1.20835 0.99914 0.90307 0.96879 1.17714 0.90178 0.94385 1.07468 1.19875 0.88070 0.91168 1.01216 1.98417 1.10987 1.92857 1.95854 0.93237 0.90168 0.92442 0.94550 0.93589 0.92640 0.88247 0.88370 0.84622 0.84613 0.84867 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.24 59.84 0.61 1.80 16 2 N -0.60 -12.55 2.86 -182.96 -0.52 -13.07 16 3 C 0.25 6.39 5.16 -5.19 -0.03 6.36 16 4 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 12 C 0.51 10.68 7.75 -10.99 -0.09 10.60 16 13 O -0.52 -13.28 16.08 -14.11 -0.23 -13.50 16 14 C 0.05 0.86 4.51 36.00 0.16 1.02 16 15 O -0.32 -5.53 9.57 -47.65 -0.46 -5.98 16 16 C 0.53 8.21 7.93 34.12 0.27 8.48 16 17 O -0.48 -7.63 14.54 -19.34 -0.28 -7.91 16 18 C -0.22 -2.90 6.31 -37.71 -0.24 -3.14 16 19 S 0.23 2.74 23.05 -107.50 -2.48 0.26 16 20 C -0.14 -1.34 6.50 -38.29 -0.25 -1.59 16 21 C -0.09 -0.62 10.07 -39.27 -0.40 -1.02 16 22 C -0.08 -0.47 10.03 -39.62 -0.40 -0.87 16 23 C -0.12 -0.70 9.94 -40.14 -0.40 -1.10 16 24 C -0.06 -0.46 9.77 -39.15 -0.38 -0.84 16 25 C -0.09 -0.92 5.86 -107.10 -0.63 -1.55 16 26 C 0.04 0.48 6.33 -40.24 -0.25 0.22 16 27 Cl -0.01 -0.12 26.49 -51.86 -1.37 -1.49 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 30 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 31 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 32 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.10 1.43 7.40 -51.93 -0.38 1.05 16 35 H 0.10 1.35 8.10 -51.93 -0.42 0.93 16 36 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 38 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 39 H 0.13 0.83 7.91 -52.49 -0.42 0.41 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -34.73 373.83 -10.43 -45.16 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: -4.01 Total: -5.03 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -2.43 Total: 4.81 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.21 Total: -38.72 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.96 Total: -27.40 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -2.48 Total: 0.26 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.37 Total: -1.49 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.73 -10.43 -45.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003317665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.437 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds