Wall clock time and date at job start Tue Mar 31 2020 05:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 120.00482 * 2 1 4 4 C 1.50701 * 109.46931 * 270.00405 * 3 2 1 5 5 H 1.08000 * 119.99944 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99943 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00110 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00054 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47009 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47122 * 119.99524 * 8 6 4 11 11 H 1.48495 * 109.46944 * 239.99596 * 8 6 4 12 12 C 1.34784 * 119.99622 * 180.02562 * 2 1 3 13 13 O 1.21277 * 119.99659 * 179.97438 * 12 2 1 14 14 C 1.50702 * 120.00002 * 359.97438 * 12 2 1 15 15 S 1.81001 * 109.46800 * 179.97438 * 14 12 2 16 16 C 1.76208 * 99.99597 * 180.02562 * 15 14 12 17 17 N 1.31564 * 126.47976 * 359.97438 * 16 15 14 18 18 N 1.28413 * 110.51214 * 179.97438 * 17 16 15 19 19 N 1.28904 * 110.40638 * 0.02562 * 18 17 16 20 20 N 1.35683 * 126.47387 * 180.02562 * 16 15 14 21 21 C 1.40241 * 127.41232 * 359.97438 * 20 16 15 22 22 C 1.38823 * 120.05481 * 324.75395 * 21 20 16 23 23 C 1.38112 * 119.94989 * 179.69655 * 22 21 20 24 24 C 1.38386 * 120.04972 * 0.59699 * 23 22 21 25 25 Cl 1.73604 * 119.94308 * 179.70016 * 24 23 22 26 26 C 1.38381 * 120.10673 * 359.67803 * 24 23 22 27 27 C 1.38113 * 120.05028 * 0.02562 * 26 24 23 28 28 H 1.09008 * 109.47005 * 270.00299 * 1 2 3 29 29 H 1.09002 * 109.46933 * 29.99612 * 1 2 3 30 30 H 1.09001 * 109.47295 * 150.00108 * 1 2 3 31 31 H 1.09003 * 109.47162 * 29.99808 * 3 2 1 32 32 H 1.08991 * 109.47530 * 150.00149 * 3 2 1 33 33 H 0.97005 * 120.00432 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46735 * 60.00140 * 14 12 2 35 35 H 1.08999 * 109.47096 * 300.00154 * 14 12 2 36 36 H 1.08004 * 120.02397 * 359.97438 * 22 21 20 37 37 H 1.08003 * 119.97242 * 180.29524 * 23 22 21 38 38 H 1.07998 * 119.97607 * 179.97438 * 26 24 23 39 39 H 1.08002 * 120.02246 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0980 1.0957 -2.2417 6 6 3.1270 2.8773 -1.6728 7 7 3.5545 3.6173 -0.6732 8 14 3.4389 3.4162 -3.4340 9 1 2.8617 2.4157 -4.3674 10 1 2.8018 4.7371 -3.6677 11 1 4.9015 3.5238 -3.6670 12 6 2.1389 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3853 -2.4724 -0.0005 15 16 2.5615 -3.8481 -0.0020 16 6 1.4412 -5.2083 -0.0026 17 7 0.1274 -5.1395 -0.0015 18 7 -0.3848 -6.3171 -0.0028 19 7 0.5437 -7.2111 -0.0043 20 7 1.7706 -6.5245 -0.0032 21 6 3.0580 -7.0806 -0.0041 22 6 4.0851 -6.4552 -0.6978 23 6 5.3536 -7.0014 -0.6920 24 6 5.5984 -8.1778 -0.0056 25 17 7.1922 -8.8661 -0.0066 26 6 4.5750 -8.8062 0.6820 27 6 3.3062 -8.2605 0.6841 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 4.0314 4.4433 -0.8505 34 1 0.7583 -2.5298 -0.8903 35 1 0.7589 -2.5303 0.8897 36 1 3.8933 -5.5398 -1.2379 37 1 6.1540 -6.5126 -1.2277 38 1 4.7683 -9.7244 1.2166 39 1 2.5079 -8.7510 1.2212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003323650.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:52 Heat of formation + Delta-G solvation = 116.441715 kcal Electronic energy + Delta-G solvation = -26648.153048 eV Core-core repulsion = 22553.472819 eV Total energy + Delta-G solvation = -4094.680229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 367.061 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.32649 -40.06723 -39.16956 -37.17245 -35.27875 -35.07339 -32.83368 -32.65643 -31.83411 -30.40460 -30.25171 -27.57169 -25.86805 -25.47157 -24.39947 -23.08627 -22.66449 -22.40798 -19.56978 -18.71287 -17.65077 -17.37624 -17.12749 -16.74042 -16.58065 -15.94057 -15.56173 -15.31701 -15.10461 -14.62505 -14.31340 -14.26343 -14.15436 -13.52206 -13.40200 -13.39213 -12.82716 -12.77152 -12.54679 -12.34889 -12.17439 -12.12454 -11.98595 -11.57010 -11.48966 -11.39450 -11.31323 -11.11574 -10.95528 -10.88237 -10.66083 -10.25893 -9.79670 -9.73190 -9.34978 -9.20634 -8.52520 -8.23818 -7.86355 -6.13503 -4.18881 -0.16823 0.36687 0.55375 0.87447 1.46005 1.60423 1.65965 1.86155 2.83499 3.03455 3.24747 3.32794 3.36362 3.68112 3.83051 4.12154 4.18542 4.36787 4.40416 4.48029 4.72018 4.75876 4.88422 4.93271 4.96276 5.14860 5.21093 5.23133 5.25058 5.50695 5.55680 5.62157 5.70538 5.81375 6.09687 6.11590 6.83798 7.26777 7.34089 7.81465 8.02533 8.10316 8.12627 8.63770 8.86886 9.46626 10.94730 Molecular weight = 367.06amu Principal moments of inertia in cm(-1) A = 0.010749 B = 0.002293 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.168753 B =12207.924657 C =14166.485538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.589 5.589 3 C 0.245 3.755 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.522 3.478 13 O -0.529 6.529 14 C -0.157 4.157 15 S 0.131 5.869 16 C 0.207 3.793 17 N -0.331 5.331 18 N -0.023 5.023 19 N -0.079 5.079 20 N -0.322 5.322 21 C 0.132 3.868 22 C -0.099 4.099 23 C -0.083 4.083 24 C -0.025 4.025 25 Cl -0.055 7.055 26 C -0.092 4.092 27 C -0.083 4.083 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.313 -24.179 3.142 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.320 5.320 3 C 0.126 3.874 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.306 3.694 13 O -0.407 6.407 14 C -0.309 4.309 15 S 0.357 5.643 16 C -0.175 4.175 17 N -0.186 5.186 18 N -0.018 5.018 19 N -0.064 5.064 20 N -0.114 5.114 21 C 0.040 3.960 22 C -0.120 4.120 23 C -0.102 4.102 24 C -0.053 4.053 25 Cl -0.026 7.026 26 C -0.112 4.112 27 C -0.104 4.104 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.166 0.834 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.939 -24.531 3.195 24.756 hybrid contribution -0.431 0.495 -0.983 1.182 sum 0.509 -24.036 2.212 24.143 Atomic orbital electron populations 1.21779 0.80745 1.03164 1.01043 1.48092 1.06604 1.07235 1.70101 1.19413 0.92649 0.77454 0.97887 1.21428 1.36822 1.06490 0.92086 0.92281 1.24935 0.95223 0.96317 0.97556 1.69934 1.38167 1.14333 1.30749 0.86428 0.78146 0.78389 0.84390 1.19749 1.20898 1.20799 1.19226 0.87633 0.83882 0.78686 1.90728 1.13067 1.86375 1.50542 1.24157 1.02230 0.95082 1.09442 1.86737 1.00355 0.88241 1.88939 1.28658 0.97679 0.91456 0.99675 1.75022 1.02842 1.16261 1.24505 1.77837 1.21543 0.93910 1.08550 1.82577 0.83990 1.17112 1.22745 1.48665 1.06846 1.03531 1.52405 1.17567 0.80202 0.96716 1.01534 1.21165 0.91531 1.01259 0.98094 1.20994 0.96780 0.93939 0.98483 1.21127 0.87558 0.95844 1.00759 1.98408 1.22717 1.84048 1.97379 1.20985 0.90631 1.00627 0.98929 1.20954 0.97594 0.93992 0.97821 0.93109 0.90181 0.92073 0.94490 0.93519 0.92635 0.85470 0.85646 0.83043 0.82912 0.83362 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.24 59.85 0.61 1.71 16 2 N -0.59 -11.48 2.86 -182.95 -0.52 -12.00 16 3 C 0.24 6.03 5.16 -5.20 -0.03 6.00 16 4 C -0.53 -14.31 9.39 -34.44 -0.32 -14.63 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.52 9.75 7.69 -10.98 -0.08 9.67 16 13 O -0.53 -11.92 15.44 5.56 0.09 -11.83 16 14 C -0.16 -2.12 4.27 36.01 0.15 -1.97 16 15 S 0.13 1.67 18.69 -107.50 -2.01 -0.34 16 16 C 0.21 2.67 7.96 -88.90 -0.71 1.96 16 17 N -0.33 -4.69 11.57 30.56 0.35 -4.33 16 18 N -0.02 -0.34 13.37 60.35 0.81 0.47 16 19 N -0.08 -1.05 13.74 60.35 0.83 -0.22 16 20 N -0.32 -3.90 3.79 -10.63 -0.04 -3.94 16 21 C 0.13 1.30 6.41 -83.58 -0.54 0.76 16 22 C -0.10 -0.87 8.86 -39.41 -0.35 -1.22 16 23 C -0.08 -0.61 9.82 -39.57 -0.39 -1.00 16 24 C -0.03 -0.18 6.32 -39.47 -0.25 -0.43 16 25 Cl -0.05 -0.37 28.95 -51.86 -1.50 -1.87 16 26 C -0.09 -0.59 9.82 -39.57 -0.39 -0.98 16 27 C -0.08 -0.64 9.82 -39.41 -0.39 -1.03 16 28 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 31 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.13 1.55 7.40 -51.91 -0.38 1.16 16 35 H 0.13 1.46 8.11 -51.92 -0.42 1.04 16 36 H 0.15 1.36 6.20 -52.48 -0.33 1.03 16 37 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -32.50 373.94 -7.34 -39.84 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -3.92 Total: -3.08 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.77 Total: 0.47 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 2.16 Total: -44.94 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.01 Total: -0.34 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.50 Total: -1.87 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.50 -7.34 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003323650.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.283 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds