Wall clock time and date at job start Tue Mar 31 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40266 * 120.30394 * 2 1 4 4 C 1.48288 * 118.85267 * 0.02562 * 3 2 1 5 5 C 1.39421 * 120.12524 * 223.82880 * 4 3 2 6 6 C 1.37980 * 119.90076 * 179.71840 * 5 4 3 7 7 C 1.38337 * 120.14151 * 0.53473 * 6 5 4 8 8 C 1.38421 * 120.24096 * 359.75967 * 7 6 5 9 9 Cl 1.73598 * 119.95173 * 179.97438 * 8 7 6 10 10 C 1.38148 * 120.10042 * 359.96038 * 8 7 6 11 11 N 1.31643 * 122.30390 * 180.02562 * 3 2 1 12 12 C 1.33406 * 122.35321 * 0.02562 * 11 3 2 13 13 C 1.40731 * 121.06768 * 180.02562 * 12 11 3 14 14 C 1.36104 * 119.72012 * 179.14507 * 13 12 11 15 15 C 1.39308 * 121.08016 * 0.83855 * 14 13 12 16 16 C 1.36361 * 120.82199 * 359.42574 * 15 14 13 17 17 C 1.39880 * 119.60100 * 0.02562 * 16 15 14 18 18 C 1.38892 * 120.30903 * 180.02562 * 2 1 3 19 19 C 1.47677 * 121.34430 * 359.97438 * 18 2 1 20 20 O 1.21507 * 119.99771 * 90.00550 * 19 18 2 21 21 O 1.34713 * 119.99579 * 269.99475 * 19 18 2 22 22 C 1.34787 * 116.99545 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99731 * 359.97438 * 22 21 19 24 24 C 1.38907 * 119.99808 * 180.02562 * 22 21 19 25 25 N 1.31351 * 120.00022 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99706 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47309 * 60.00151 * 26 24 22 28 28 H 1.48497 * 109.46829 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47417 * 300.00109 * 26 24 22 30 30 H 1.08999 * 109.46899 * 265.91895 * 1 2 3 31 31 H 1.08998 * 109.47159 * 25.91912 * 1 2 3 32 32 H 1.09000 * 109.47221 * 145.91469 * 1 2 3 33 33 H 1.08006 * 120.04706 * 359.97438 * 5 4 3 34 34 H 1.08001 * 119.93062 * 180.25532 * 6 5 4 35 35 H 1.07998 * 119.88087 * 179.74957 * 7 6 5 36 36 H 1.08000 * 120.07050 * 179.97438 * 10 8 7 37 37 H 1.08001 * 120.13579 * 359.96591 * 13 12 11 38 38 H 1.08003 * 119.45746 * 180.26617 * 14 13 12 39 39 H 1.08010 * 119.58983 * 179.44221 * 15 14 13 40 40 H 1.08007 * 120.20419 * 179.97438 * 16 15 14 41 41 H 0.96996 * 119.99909 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2148 1.2110 0.0000 4 6 1.4545 2.4842 0.0006 5 6 1.8424 3.5311 -0.8344 6 6 1.1281 4.7117 -0.8344 7 6 0.0352 4.8623 0.0002 8 6 -0.3514 3.8289 0.8360 9 17 -1.7237 4.0263 1.8808 10 6 0.3531 2.6405 0.8399 11 7 3.5304 1.2569 -0.0005 12 6 4.2832 0.1556 -0.0015 13 6 5.6882 0.2362 -0.0015 14 6 6.4296 -0.9050 0.0150 15 6 5.8209 -2.1581 0.0146 16 6 4.4623 -2.2749 0.0092 17 6 3.6697 -1.1223 0.0036 18 6 2.2080 -1.1991 -0.0005 19 6 1.5068 -2.4988 -0.0006 20 8 1.2180 -3.0332 -1.0529 21 8 1.1875 -3.0918 1.1661 22 6 0.5489 -4.2767 1.0956 23 1 0.3157 -4.7079 0.1333 24 6 0.1898 -4.9425 2.2606 25 7 0.4722 -4.4173 3.4309 26 14 -0.6959 -6.5843 2.1627 27 1 0.1538 -7.5627 1.4376 28 1 -0.9659 -7.0835 3.5350 29 1 -1.9804 -6.4114 1.4379 30 1 -0.3633 -0.0731 1.0251 31 1 -0.3633 0.9243 -0.4492 32 1 -0.3634 -0.8511 -0.5759 33 1 2.6981 3.4168 -1.4833 34 1 1.4256 5.5216 -1.4840 35 1 -0.5184 5.7896 -0.0003 36 1 0.0513 1.8347 1.4926 37 1 6.1760 1.1998 -0.0012 38 1 7.5075 -0.8381 0.0194 39 1 6.4327 -3.0482 0.0188 40 1 4.0009 -3.2514 0.0085 41 1 0.2211 -4.8821 4.2444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003330046.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:34 Heat of formation + Delta-G solvation = -4.777979 kcal Electronic energy + Delta-G solvation = -29398.311017 eV Core-core repulsion = 25234.177949 eV Total energy + Delta-G solvation = -4164.133068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 367.076 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.90531 -39.43628 -38.91682 -37.22139 -36.46568 -35.39349 -33.80916 -32.56685 -32.24493 -31.15107 -30.70196 -29.27638 -27.31465 -25.86551 -24.80053 -23.22786 -22.62685 -22.21920 -21.93178 -20.07746 -18.23208 -17.87492 -17.68710 -16.82440 -16.64219 -15.84740 -15.55995 -15.38948 -14.73270 -14.64954 -14.56338 -14.36445 -14.17071 -13.92793 -13.81908 -13.63643 -13.57830 -12.91572 -12.83576 -12.60921 -12.22539 -11.91721 -11.83911 -11.73951 -11.64279 -11.48817 -11.36429 -11.29279 -11.20175 -10.90925 -10.56490 -10.54637 -10.24814 -9.85079 -9.75171 -9.34273 -9.11679 -8.93974 -8.71639 -8.34480 -8.02749 -6.54879 -4.23183 0.22243 0.73456 1.02272 1.19426 1.95400 2.00060 2.90258 2.94417 3.11508 3.15542 3.25469 3.44360 3.73591 3.95723 4.15194 4.24540 4.56201 4.61700 4.76915 4.78088 4.84664 4.99651 5.01024 5.06239 5.09004 5.18373 5.33605 5.40005 5.47899 5.54248 5.58933 5.69443 5.84622 5.92436 6.02539 6.06426 6.12308 6.16231 6.24228 6.29577 6.40838 6.45928 6.54674 6.59364 6.68237 6.89860 7.24429 7.76906 7.90623 8.46313 8.91998 9.64064 10.61656 Molecular weight = 367.08amu Principal moments of inertia in cm(-1) A = 0.007564 B = 0.003572 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3700.887900 B = 7837.270789 C =10788.128979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.095 4.095 3 C 0.202 3.798 4 C -0.026 4.026 5 C -0.076 4.076 6 C -0.112 4.112 7 C -0.103 4.103 8 C -0.038 4.038 9 Cl -0.068 7.068 10 C -0.087 4.087 11 N -0.461 5.461 12 C 0.127 3.873 13 C -0.093 4.093 14 C -0.103 4.103 15 C -0.115 4.115 16 C -0.082 4.082 17 C -0.070 4.070 18 C -0.005 4.005 19 C 0.436 3.564 20 O -0.537 6.537 21 O -0.195 6.195 22 C -0.389 4.389 23 H 0.099 0.901 24 C 0.048 3.952 25 N -0.855 5.855 26 Si 0.945 3.055 27 H -0.268 1.268 28 H -0.277 1.277 29 H -0.268 1.268 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.625 16.017 -5.183 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.097 4.097 3 C 0.049 3.951 4 C -0.027 4.027 5 C -0.095 4.095 6 C -0.131 4.131 7 C -0.122 4.122 8 C -0.064 4.064 9 Cl -0.039 7.039 10 C -0.106 4.106 11 N -0.168 5.168 12 C 0.006 3.994 13 C -0.112 4.112 14 C -0.122 4.122 15 C -0.133 4.133 16 C -0.100 4.100 17 C -0.072 4.072 18 C -0.014 4.014 19 C 0.283 3.717 20 O -0.434 6.434 21 O -0.101 6.101 22 C -0.465 4.465 23 H 0.116 0.884 24 C -0.158 4.158 25 N -0.490 5.490 26 Si 0.769 3.231 27 H -0.193 1.193 28 H -0.202 1.202 29 H -0.193 1.193 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.957 16.561 -5.085 18.019 hybrid contribution -0.907 -1.673 0.163 1.910 sum 4.049 14.888 -4.921 16.195 Atomic orbital electron populations 1.21063 0.89351 1.03761 1.03719 1.20831 0.97742 0.91204 0.99973 1.19399 0.88952 0.90941 0.95855 1.18316 0.94535 0.92345 0.97488 1.21332 0.98808 0.91776 0.97605 1.21050 0.95096 0.97814 0.99106 1.21140 0.97510 0.98163 0.95391 1.20738 0.92633 0.95973 0.97085 1.98383 1.42331 1.97488 1.65686 1.21314 0.94003 0.96709 0.98624 1.67479 1.05528 1.31284 1.12537 1.18591 0.93975 0.86973 0.99867 1.20719 0.90569 0.99337 1.00570 1.20874 1.00175 0.92068 0.99128 1.20960 0.94495 0.97926 0.99962 1.21040 0.93944 0.98011 0.97052 1.19681 0.91605 0.94853 1.01076 1.20652 0.91798 0.92348 0.96634 1.20310 0.81934 0.85292 0.84187 1.90706 1.55130 1.64659 1.32946 1.83998 1.62483 1.33786 1.29808 1.21272 1.36069 0.94009 0.95138 0.88378 1.25394 0.96847 0.99658 0.93919 1.69949 1.42921 1.38575 0.97569 0.85722 0.79675 0.79900 0.77813 1.19283 1.20202 1.19254 0.89623 0.90472 0.90273 0.84781 0.84723 0.84846 0.83867 0.84671 0.85260 0.85261 0.84816 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.03 7.88 36.01 0.28 -1.75 16 2 C -0.10 -1.75 5.90 -103.62 -0.61 -2.36 16 3 C 0.20 3.31 6.38 -83.05 -0.53 2.78 16 4 C -0.03 -0.35 5.02 -104.91 -0.53 -0.87 16 5 C -0.08 -0.86 9.62 -39.24 -0.38 -1.23 16 6 C -0.11 -1.01 10.03 -39.64 -0.40 -1.41 16 7 C -0.10 -0.96 9.82 -39.48 -0.39 -1.35 16 8 C -0.04 -0.42 6.31 -39.55 -0.25 -0.67 16 9 Cl -0.07 -0.74 28.95 -51.86 -1.50 -2.24 16 10 C -0.09 -1.11 7.34 -39.20 -0.29 -1.40 16 11 N -0.46 -7.68 9.98 -7.62 -0.08 -7.75 16 12 C 0.13 2.16 6.62 -84.90 -0.56 1.59 16 13 C -0.09 -1.27 9.99 -39.41 -0.39 -1.66 16 14 C -0.10 -1.24 9.94 -39.95 -0.40 -1.64 16 15 C -0.12 -1.60 9.96 -39.86 -0.40 -1.99 16 16 C -0.08 -1.46 9.48 -39.64 -0.38 -1.83 16 17 C -0.07 -1.35 5.90 -104.67 -0.62 -1.96 16 18 C -0.01 -0.11 5.96 -102.53 -0.61 -0.72 16 19 C 0.44 10.93 5.00 34.59 0.17 11.11 16 20 O -0.54 -14.44 16.35 -19.27 -0.32 -14.75 16 21 O -0.19 -5.49 9.75 -21.40 -0.21 -5.70 16 22 C -0.39 -11.13 9.65 30.98 0.30 -10.83 16 23 H 0.10 2.80 6.86 -52.49 -0.36 2.44 16 24 C 0.05 1.30 5.50 -17.51 -0.10 1.20 16 25 N -0.85 -24.31 13.67 55.49 0.76 -23.55 16 26 Si 0.95 20.55 29.55 -169.99 -5.02 15.53 16 27 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 28 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 29 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 30 H 0.09 1.39 7.43 -51.93 -0.39 1.01 16 31 H 0.08 1.07 5.87 -51.93 -0.31 0.76 16 32 H 0.08 1.46 7.32 -51.93 -0.38 1.08 16 33 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.14 1.88 6.24 -52.49 -0.33 1.56 16 37 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 40 H 0.13 2.58 7.35 -52.48 -0.39 2.19 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -32.68 373.59 -10.61 -43.30 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -3.82 Total: 4.55 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -6.06 Total: -15.01 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: 0.68 Total: -31.30 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.52 Total: -20.45 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.68 -10.61 -43.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003330046.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.518 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds