Wall clock time and date at job start Tue Mar 31 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00056 * 2 1 4 4 C 1.52994 * 109.47398 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47320 * 304.99697 * 4 3 2 6 6 C 1.52996 * 109.47598 * 184.99485 * 4 3 2 7 7 N 1.46497 * 109.47270 * 64.99392 * 4 3 2 8 8 C 1.36485 * 127.12396 * 240.00283 * 7 4 3 9 9 C 1.50698 * 126.31583 * 0.02562 * 8 7 4 10 10 O 1.42896 * 109.47058 * 89.99831 * 9 8 7 11 11 C 1.35957 * 116.99930 * 180.02562 * 10 9 8 12 12 C 1.38666 * 120.06267 * 0.02562 * 11 10 9 13 13 C 1.38175 * 119.96864 * 179.97438 * 12 11 10 14 14 C 1.38259 * 120.09965 * 0.02562 * 13 12 11 15 15 C 1.38262 * 120.12321 * 0.02562 * 14 13 12 16 16 C 1.38330 * 120.02918 * 359.69763 * 15 14 13 17 17 F 1.35098 * 120.04900 * 180.27878 * 16 15 14 18 18 N 1.30490 * 107.36784 * 179.97438 * 8 7 4 19 19 N 1.28531 * 110.06206 * 359.76490 * 18 8 7 20 20 C 1.31400 * 109.79542 * 0.39035 * 19 18 8 21 21 S 1.76201 * 126.49011 * 179.88488 * 20 19 18 22 22 C 1.76199 * 99.99986 * 359.68530 * 21 20 19 23 23 H 1.08002 * 120.00405 * 0.02562 * 22 21 20 24 24 C 1.38673 * 120.00014 * 179.72325 * 22 21 20 25 25 N 1.31639 * 120.00221 * 180.27691 * 24 22 21 26 26 Si 1.86800 * 119.99906 * 0.28056 * 24 22 21 27 27 H 1.48501 * 109.47483 * 89.99530 * 26 24 22 28 28 H 1.48502 * 109.47495 * 210.00044 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99867 * 26 24 22 30 30 H 1.09006 * 109.47008 * 60.00569 * 1 2 3 31 31 H 1.09002 * 109.47550 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47428 * 300.00279 * 1 2 3 33 33 H 1.08996 * 109.47618 * 59.99679 * 3 2 1 34 34 H 1.09003 * 109.46792 * 299.99971 * 3 2 1 35 35 H 1.08997 * 109.47481 * 300.00284 * 6 4 3 36 36 H 1.09007 * 109.47044 * 60.00092 * 6 4 3 37 37 H 1.08997 * 109.47568 * 179.97438 * 6 4 3 38 38 H 1.08996 * 109.47277 * 209.99830 * 9 8 7 39 39 H 1.08998 * 109.47103 * 329.99776 * 9 8 7 40 40 H 1.07995 * 120.01080 * 359.97438 * 12 11 10 41 41 H 1.08006 * 119.95367 * 180.02562 * 13 12 11 42 42 H 1.07996 * 119.94093 * 179.97438 * 14 13 12 43 43 H 1.08003 * 119.98587 * 179.97438 * 15 14 13 44 44 H 0.96996 * 119.99788 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5353 1.1847 0.0006 5 1 3.8507 0.5686 0.8428 6 6 4.1572 2.5769 0.1262 7 7 3.9766 0.5639 -1.2508 8 6 4.6745 -0.6006 -1.3913 9 6 5.1416 -1.5012 -0.2770 10 8 4.1315 -2.4713 0.0065 11 6 4.3960 -3.3672 0.9944 12 6 5.6021 -3.3129 1.6766 13 6 5.8687 -4.2240 2.6807 14 6 4.9348 -5.1903 3.0061 15 6 3.7315 -5.2486 2.3277 16 6 3.4568 -4.3356 1.3255 17 9 2.2788 -4.3887 0.6662 18 7 4.8616 -0.7908 -2.6687 19 7 4.3279 0.1667 -3.3399 20 6 3.7741 1.0307 -2.5192 21 16 2.9247 2.5073 -2.9693 22 6 3.0763 2.4251 -4.7228 23 1 3.5944 1.5961 -5.1819 24 6 2.5249 3.4217 -5.5139 25 7 2.6334 3.3575 -6.8243 26 14 1.6282 4.8553 -4.7201 27 1 2.5920 5.9511 -4.4453 28 1 0.5691 5.3462 -5.6381 29 1 1.0105 4.4083 -3.4458 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6885 1.8463 -0.8900 35 1 3.8419 3.1931 -0.7158 36 1 3.8289 3.0388 1.0574 37 1 5.2438 2.4909 0.1271 38 1 6.0578 -2.0083 -0.5796 39 1 5.3339 -0.9054 0.6152 40 1 6.3326 -2.5590 1.4232 41 1 6.8079 -4.1813 3.2122 42 1 5.1460 -5.9013 3.7910 43 1 3.0038 -6.0046 2.5834 44 1 2.2480 4.0548 -7.3775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003346739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:47 Heat of formation + Delta-G solvation = -18.986290 kcal Electronic energy + Delta-G solvation = -31163.037333 eV Core-core repulsion = 26737.688473 eV Total energy + Delta-G solvation = -4425.348859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.115 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.83287 -42.32104 -40.14769 -38.12322 -37.66526 -35.54902 -32.62760 -31.81636 -30.96739 -30.78347 -29.78444 -27.59486 -27.09231 -25.75319 -25.28218 -23.55626 -23.02420 -22.66623 -21.26804 -20.37766 -18.71742 -17.96084 -17.41877 -17.07915 -16.60862 -16.41914 -16.33396 -15.92373 -15.62557 -15.31848 -15.19823 -15.15997 -14.87242 -14.72622 -14.60169 -14.41036 -13.29149 -13.15024 -13.04876 -12.93314 -12.83194 -12.62704 -12.36146 -12.27273 -11.93821 -11.84404 -11.62936 -11.45513 -11.38170 -11.29275 -11.26971 -10.90588 -10.80009 -10.12036 -9.98655 -9.86442 -9.61600 -9.56291 -9.22784 -8.98545 -8.95349 -8.41281 -7.13587 -6.42465 -4.23316 0.84891 1.00178 1.86856 2.14847 2.86962 3.04692 3.08850 3.13732 3.26953 3.31079 3.62376 3.63665 4.03303 4.04263 4.23043 4.34985 4.49779 4.59000 4.64366 4.66490 4.79384 4.85215 4.93750 4.95054 4.95587 5.02620 5.19632 5.25156 5.36196 5.43007 5.44325 5.53534 5.68981 5.70296 5.74724 5.76894 5.89003 5.93945 6.02508 6.08174 6.32154 6.38483 6.56961 7.07580 7.11927 7.22144 7.83176 8.64059 8.95770 9.32372 10.66908 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.015916 B = 0.002760 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.813233 B =10141.106743 C =10521.088104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.038 3.962 4 C 0.142 3.858 5 H 0.104 0.896 6 C -0.172 4.172 7 N -0.455 5.455 8 C 0.139 3.861 9 C 0.164 3.836 10 O -0.292 6.292 11 C 0.107 3.893 12 C -0.187 4.187 13 C -0.089 4.089 14 C -0.135 4.135 15 C -0.118 4.118 16 C 0.071 3.929 17 F -0.129 7.129 18 N -0.261 5.261 19 N -0.286 5.286 20 C 0.200 3.800 21 S 0.054 5.946 22 C -0.527 4.527 23 H 0.122 0.878 24 C 0.101 3.899 25 N -0.861 5.861 26 Si 0.842 3.158 27 H -0.262 1.262 28 H -0.265 1.265 29 H -0.241 1.241 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.140 0.860 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.411 -8.432 24.923 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C -0.040 4.040 4 C 0.038 3.962 5 H 0.122 0.878 6 C -0.230 4.230 7 N -0.152 5.152 8 C -0.130 4.130 9 C 0.086 3.914 10 O -0.204 6.204 11 C 0.060 3.940 12 C -0.206 4.206 13 C -0.107 4.107 14 C -0.153 4.153 15 C -0.136 4.136 16 C 0.051 3.949 17 F -0.108 7.108 18 N -0.104 5.104 19 N -0.131 5.131 20 C -0.171 4.171 21 S 0.285 5.715 22 C -0.675 4.675 23 H 0.139 0.861 24 C -0.109 4.109 25 N -0.496 5.496 26 Si 0.666 3.334 27 H -0.187 1.187 28 H -0.189 1.189 29 H -0.166 1.166 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.158 0.842 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.169 -8.282 23.917 25.403 hybrid contribution -0.577 0.637 0.451 0.970 sum 1.592 -7.646 24.368 25.589 Atomic orbital electron populations 1.22733 0.80766 1.02814 0.99974 1.87956 1.19912 1.26438 1.95438 1.23035 0.91896 0.86447 1.02589 1.21420 0.94008 0.96130 0.84679 0.87785 1.22224 1.01835 0.94538 1.04427 1.46269 1.43236 1.19105 1.06617 1.23683 1.04176 0.89738 0.95360 1.20586 0.90089 0.87435 0.93259 1.86338 1.43084 1.40939 1.49996 1.19084 0.93861 0.90801 0.90293 1.21213 0.96467 1.03214 0.99701 1.21001 0.99447 0.94059 0.96239 1.20905 0.93394 0.99954 1.01037 1.21033 0.98907 0.98468 0.95234 1.17049 0.82858 0.98136 0.96882 1.91534 1.43871 1.95860 1.79538 1.73986 1.17756 1.18641 1.00046 1.74888 1.14005 1.00268 1.23928 1.27364 1.03702 1.04108 0.81947 1.82560 1.62664 1.14790 1.11482 1.22605 1.43422 1.15242 0.86249 0.86057 1.24667 0.94780 0.97119 0.94373 1.69914 1.42625 1.33852 1.03199 0.87026 0.81191 0.83927 0.81238 1.18671 1.18923 1.16566 0.93558 0.89644 0.94334 0.91457 0.90472 0.89562 0.90055 0.90918 0.88544 0.90556 0.84408 0.85068 0.84969 0.84172 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.12 10.65 -35.23 -0.38 -6.49 16 3 C 0.04 0.54 5.34 37.15 0.20 0.74 16 4 C 0.14 1.96 3.12 -67.94 -0.21 1.74 16 5 H 0.10 1.21 6.88 -51.93 -0.36 0.85 16 6 C -0.17 -1.97 9.24 37.16 0.34 -1.63 16 7 N -0.45 -8.43 2.60 -106.43 -0.28 -8.70 16 8 C 0.14 2.62 7.69 -154.09 -1.19 1.43 16 9 C 0.16 2.23 4.95 36.00 0.18 2.40 16 10 O -0.29 -4.55 9.99 -19.61 -0.20 -4.75 16 11 C 0.11 1.35 6.69 -39.17 -0.26 1.09 16 12 C -0.19 -1.73 9.04 -39.45 -0.36 -2.09 16 13 C -0.09 -0.66 10.04 -39.60 -0.40 -1.05 16 14 C -0.13 -0.98 10.04 -39.56 -0.40 -1.38 16 15 C -0.12 -1.08 10.02 -39.54 -0.40 -1.47 16 16 C 0.07 0.90 7.31 -39.30 -0.29 0.61 16 17 F -0.13 -1.97 17.11 2.25 0.04 -1.93 16 18 N -0.26 -6.01 12.18 32.97 0.40 -5.61 16 19 N -0.29 -7.35 11.04 30.72 0.34 -7.01 16 20 C 0.20 4.57 7.53 -88.12 -0.66 3.91 16 21 S 0.05 1.23 15.64 -107.50 -1.68 -0.45 16 22 C -0.53 -14.95 9.91 30.89 0.31 -14.65 16 23 H 0.12 3.89 7.16 -52.49 -0.38 3.52 16 24 C 0.10 2.81 5.50 -17.47 -0.10 2.71 16 25 N -0.86 -25.29 13.97 55.48 0.78 -24.51 16 26 Si 0.84 19.16 27.74 -169.99 -4.71 14.45 16 27 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 28 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 29 H -0.24 -5.11 6.73 56.52 0.38 -4.73 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.24 5.90 -51.93 -0.31 0.94 16 35 H 0.09 1.19 6.04 -51.93 -0.31 0.87 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 1.13 7.66 -51.93 -0.40 0.73 16 39 H 0.08 0.77 6.76 -51.93 -0.35 0.42 16 40 H 0.14 1.00 6.30 -52.49 -0.33 0.66 16 41 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 42 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -35.93 387.33 -7.36 -43.29 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.39 Total: 1.97 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -2.12 Total: -6.09 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 1.24 Total: -45.84 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.57 Total: -11.24 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.45 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -1.68 Total: -0.45 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.93 -7.36 -43.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003346739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.308 kcal (2) G-P(sol) polarization free energy of solvation -35.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds