Wall clock time and date at job start Tue Mar 31 2020 06:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00056 * 2 1 4 4 C 1.52994 * 109.47398 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47320 * 304.99697 * 4 3 2 6 6 C 1.52996 * 109.47598 * 184.99485 * 4 3 2 7 7 N 1.46497 * 109.47270 * 64.99392 * 4 3 2 8 8 C 1.36485 * 127.12396 * 240.00283 * 7 4 3 9 9 C 1.50698 * 126.31583 * 0.02562 * 8 7 4 10 10 O 1.42896 * 109.47058 * 89.99831 * 9 8 7 11 11 C 1.35957 * 116.99930 * 180.02562 * 10 9 8 12 12 C 1.38666 * 120.06267 * 0.02562 * 11 10 9 13 13 C 1.38175 * 119.96864 * 179.97438 * 12 11 10 14 14 C 1.38259 * 120.09965 * 0.02562 * 13 12 11 15 15 C 1.38262 * 120.12321 * 0.02562 * 14 13 12 16 16 C 1.38330 * 120.02918 * 359.69763 * 15 14 13 17 17 F 1.35098 * 120.04900 * 180.27878 * 16 15 14 18 18 N 1.30490 * 107.36784 * 179.97438 * 8 7 4 19 19 N 1.28531 * 110.06206 * 359.76490 * 18 8 7 20 20 C 1.31400 * 109.79542 * 0.39035 * 19 18 8 21 21 S 1.76201 * 126.49011 * 179.88488 * 20 19 18 22 22 C 1.76199 * 99.99986 * 359.68530 * 21 20 19 23 23 H 1.08002 * 120.00405 * 0.02562 * 22 21 20 24 24 C 1.38673 * 120.00014 * 179.72325 * 22 21 20 25 25 N 1.31639 * 120.00221 * 180.27691 * 24 22 21 26 26 Si 1.86800 * 119.99906 * 0.28056 * 24 22 21 27 27 H 1.48501 * 109.47483 * 89.99530 * 26 24 22 28 28 H 1.48502 * 109.47495 * 210.00044 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99867 * 26 24 22 30 30 H 1.09006 * 109.47008 * 60.00569 * 1 2 3 31 31 H 1.09002 * 109.47550 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47428 * 300.00279 * 1 2 3 33 33 H 1.08996 * 109.47618 * 59.99679 * 3 2 1 34 34 H 1.09003 * 109.46792 * 299.99971 * 3 2 1 35 35 H 1.08997 * 109.47481 * 300.00284 * 6 4 3 36 36 H 1.09007 * 109.47044 * 60.00092 * 6 4 3 37 37 H 1.08997 * 109.47568 * 179.97438 * 6 4 3 38 38 H 1.08996 * 109.47277 * 209.99830 * 9 8 7 39 39 H 1.08998 * 109.47103 * 329.99776 * 9 8 7 40 40 H 1.07995 * 120.01080 * 359.97438 * 12 11 10 41 41 H 1.08006 * 119.95367 * 180.02562 * 13 12 11 42 42 H 1.07996 * 119.94093 * 179.97438 * 14 13 12 43 43 H 1.08003 * 119.98587 * 179.97438 * 15 14 13 44 44 H 0.96996 * 119.99788 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5353 1.1847 0.0006 5 1 3.8507 0.5686 0.8428 6 6 4.1572 2.5769 0.1262 7 7 3.9766 0.5639 -1.2508 8 6 4.6745 -0.6006 -1.3913 9 6 5.1416 -1.5012 -0.2770 10 8 4.1315 -2.4713 0.0065 11 6 4.3960 -3.3672 0.9944 12 6 5.6021 -3.3129 1.6766 13 6 5.8687 -4.2240 2.6807 14 6 4.9348 -5.1903 3.0061 15 6 3.7315 -5.2486 2.3277 16 6 3.4568 -4.3356 1.3255 17 9 2.2788 -4.3887 0.6662 18 7 4.8616 -0.7908 -2.6687 19 7 4.3279 0.1667 -3.3399 20 6 3.7741 1.0307 -2.5192 21 16 2.9247 2.5073 -2.9693 22 6 3.0763 2.4251 -4.7228 23 1 3.5944 1.5961 -5.1819 24 6 2.5249 3.4217 -5.5139 25 7 2.6334 3.3575 -6.8243 26 14 1.6282 4.8553 -4.7201 27 1 2.5920 5.9511 -4.4453 28 1 0.5691 5.3462 -5.6381 29 1 1.0105 4.4083 -3.4458 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6885 1.8463 -0.8900 35 1 3.8419 3.1931 -0.7158 36 1 3.8289 3.0388 1.0574 37 1 5.2438 2.4909 0.1271 38 1 6.0578 -2.0083 -0.5796 39 1 5.3339 -0.9054 0.6152 40 1 6.3326 -2.5590 1.4232 41 1 6.8079 -4.1813 3.2122 42 1 5.1460 -5.9013 3.7910 43 1 3.0038 -6.0046 2.5834 44 1 2.2480 4.0548 -7.3775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003346739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:46 Heat of formation + Delta-G solvation = -43.468444 kcal Electronic energy + Delta-G solvation = -31164.098959 eV Core-core repulsion = 26737.688473 eV Total energy + Delta-G solvation = -4426.410485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.115 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.82008 -43.91372 -41.02426 -39.26928 -38.49204 -36.81935 -34.76150 -33.12259 -32.12006 -31.64880 -30.72569 -28.58067 -28.47289 -27.77767 -26.30623 -24.95345 -23.91755 -23.43110 -22.70500 -21.74892 -19.77524 -19.59728 -18.62974 -18.06400 -17.62525 -17.60974 -17.46221 -17.21200 -17.16402 -16.90757 -16.39027 -16.21926 -15.96095 -15.82739 -15.60933 -15.31082 -14.97701 -14.29821 -14.09160 -13.98489 -13.77983 -13.65622 -13.55940 -13.36119 -13.29352 -13.13549 -13.05262 -12.64059 -12.50911 -12.37724 -12.28250 -12.16380 -12.11779 -11.91992 -11.68560 -11.48621 -11.18167 -10.95574 -10.87531 -10.65723 -9.92156 -9.23169 -8.99434 -8.54312 -6.36472 0.15591 0.28322 0.35109 0.51877 1.27472 1.30747 1.39448 1.52584 1.69151 2.13374 2.29995 2.32130 2.60055 2.63645 2.82718 3.12400 3.30017 3.53875 3.60662 3.74426 3.82237 3.86841 3.94621 4.04194 4.24801 4.31372 4.33463 4.36577 4.39799 4.46629 4.53719 4.54936 4.58452 4.66522 4.75836 4.85326 4.98294 5.00868 5.12200 5.21979 5.28911 5.45238 5.69825 5.71710 5.80236 6.09268 6.24165 6.31471 6.81282 7.65196 8.60395 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.015916 B = 0.002760 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.813233 B =10141.106743 C =10521.088104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.410 6.410 3 C 0.034 3.966 4 C 0.127 3.873 5 H 0.135 0.865 6 C -0.167 4.167 7 N -0.443 5.443 8 C 0.162 3.838 9 C 0.164 3.836 10 O -0.328 6.328 11 C 0.078 3.922 12 C -0.184 4.184 13 C -0.080 4.080 14 C -0.123 4.123 15 C -0.118 4.118 16 C 0.028 3.972 17 F -0.158 7.158 18 N -0.312 5.312 19 N -0.345 5.345 20 C 0.179 3.821 21 S 0.110 5.890 22 C -0.563 4.563 23 H 0.063 0.937 24 C 0.044 3.956 25 N -0.914 5.914 26 Si 0.913 3.087 27 H -0.246 1.246 28 H -0.255 1.255 29 H -0.215 1.215 30 H 0.035 0.965 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.126 0.874 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.160 0.840 41 H 0.169 0.831 42 H 0.169 0.831 43 H 0.157 0.843 44 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 -7.730 30.796 31.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.330 6.330 3 C -0.043 4.043 4 C 0.026 3.974 5 H 0.153 0.847 6 C -0.225 4.225 7 N -0.139 5.139 8 C -0.108 4.108 9 C 0.088 3.912 10 O -0.241 6.241 11 C 0.032 3.968 12 C -0.203 4.203 13 C -0.098 4.098 14 C -0.141 4.141 15 C -0.136 4.136 16 C 0.009 3.991 17 F -0.137 7.137 18 N -0.154 5.154 19 N -0.189 5.189 20 C -0.195 4.195 21 S 0.340 5.660 22 C -0.711 4.711 23 H 0.081 0.919 24 C -0.162 4.162 25 N -0.550 5.550 26 Si 0.731 3.269 27 H -0.169 1.169 28 H -0.178 1.178 29 H -0.138 1.138 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.131 0.869 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.145 0.855 37 H 0.097 0.903 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.178 0.822 41 H 0.187 0.813 42 H 0.186 0.814 43 H 0.174 0.826 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.804 -7.612 29.829 30.913 hybrid contribution -0.648 0.143 -1.187 1.359 sum 2.156 -7.469 28.643 29.679 Atomic orbital electron populations 1.22857 0.79530 1.03224 1.01013 1.87918 1.21497 1.27891 1.95650 1.23201 0.91766 0.85850 1.03476 1.22065 0.94370 0.97908 0.83087 0.84731 1.22272 1.02130 0.92507 1.05601 1.46621 1.41898 1.18622 1.06767 1.24699 1.01037 0.89619 0.95496 1.20887 0.89894 0.87442 0.93018 1.86232 1.43978 1.42088 1.51823 1.19364 0.95572 0.90989 0.90872 1.21525 0.95261 1.04059 0.99407 1.21503 1.00617 0.92599 0.95033 1.21398 0.92048 1.00006 1.00684 1.21340 1.00248 0.97832 0.94190 1.17647 0.82588 1.00160 0.98723 1.91450 1.45553 1.96200 1.80450 1.73863 1.20117 1.19138 1.02291 1.74765 1.15778 1.01853 1.26515 1.27325 1.04388 1.04134 0.83668 1.81749 1.63467 1.15033 1.05735 1.22724 1.43490 1.14112 0.90756 0.91891 1.25795 0.95259 1.00325 0.94820 1.70060 1.44047 1.35513 1.05395 0.85964 0.80161 0.79467 0.81277 1.16922 1.17845 1.13787 0.94657 0.89731 0.91024 0.86859 0.92985 0.92048 0.85520 0.90293 0.86786 0.86169 0.82246 0.81331 0.81400 0.82583 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.41 -12.80 10.65 -148.98 -1.59 -14.39 16 3 C 0.03 0.89 5.34 71.98 0.38 1.27 16 4 C 0.13 3.16 3.12 44.99 0.14 3.31 16 5 H 0.14 2.55 6.88 -2.38 -0.02 2.53 16 6 C -0.17 -3.23 9.24 71.98 0.66 -2.57 16 7 N -0.44 -16.31 2.60 -490.64 -1.28 -17.59 16 8 C 0.16 6.16 7.69 137.66 1.06 7.22 16 9 C 0.16 4.21 4.95 71.24 0.35 4.56 16 10 O -0.33 -10.14 9.99 -93.07 -0.93 -11.06 16 11 C 0.08 1.89 6.69 22.53 0.15 2.04 16 12 C -0.18 -2.77 9.04 22.36 0.20 -2.56 16 13 C -0.08 -0.79 10.04 22.26 0.22 -0.56 16 14 C -0.12 -1.27 10.04 22.28 0.22 -1.04 16 15 C -0.12 -1.91 10.02 22.30 0.22 -1.69 16 16 C 0.03 0.71 7.31 22.45 0.16 0.88 16 17 F -0.16 -5.05 17.11 44.97 0.77 -4.28 16 18 N -0.31 -15.20 12.18 -49.59 -0.60 -15.80 16 19 N -0.34 -19.03 11.04 -56.71 -0.63 -19.65 16 20 C 0.18 8.50 7.53 179.47 1.35 9.85 16 21 S 0.11 5.12 15.64 -56.49 -0.88 4.24 16 22 C -0.56 -33.97 9.91 67.92 0.67 -33.30 16 23 H 0.06 4.44 7.16 -2.91 -0.02 4.42 16 24 C 0.04 2.55 5.50 84.83 0.47 3.02 16 25 N -0.91 -56.60 13.97 21.63 0.30 -56.30 16 26 Si 0.91 39.63 27.74 68.60 1.90 41.53 16 27 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 28 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 29 H -0.21 -8.32 6.73 99.48 0.67 -7.65 16 30 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.60 5.90 -2.39 -0.01 1.59 16 35 H 0.06 1.53 6.04 -2.39 -0.01 1.52 16 36 H 0.13 1.31 8.14 -2.38 -0.02 1.30 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.11 2.46 7.66 -2.39 -0.02 2.45 16 39 H 0.12 1.95 6.76 -2.39 -0.02 1.94 16 40 H 0.16 1.59 6.30 -2.91 -0.02 1.57 16 41 H 0.17 0.46 8.06 -2.91 -0.02 0.43 16 42 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 43 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.28 15.77 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -90.74 387.33 5.61 -85.14 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 1.01 Total: 15.77 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 7.53 Total: -7.60 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -2.20 Total: -109.34 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -2.52 Total: -25.45 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.77 Total: -4.28 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.90 Total: 41.53 kcal Atomic # 16 Polarization: 5.12 SS G_CDS: -0.88 Total: 4.24 kcal Total: -90.74 5.61 -85.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003346739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.667 kcal (2) G-P(sol) polarization free energy of solvation -90.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds