Wall clock time and date at job start Tue Mar 31 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99720 * 2 1 4 4 C 1.53002 * 109.46622 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47070 * 55.00159 * 4 3 2 6 6 C 1.52997 * 109.46817 * 174.99979 * 4 3 2 7 7 N 1.46505 * 109.47411 * 295.00080 * 4 3 2 8 8 C 1.36476 * 127.12194 * 120.00186 * 7 4 3 9 9 C 1.50703 * 126.31519 * 0.02562 * 8 7 4 10 10 O 1.42903 * 109.46922 * 90.00094 * 9 8 7 11 11 C 1.35953 * 117.00068 * 179.97438 * 10 9 8 12 12 C 1.38663 * 120.05946 * 359.97438 * 11 10 9 13 13 C 1.38184 * 119.96778 * 179.97438 * 12 11 10 14 14 C 1.38257 * 120.09484 * 0.02771 * 13 12 11 15 15 C 1.38256 * 120.12837 * 359.97438 * 14 13 12 16 16 C 1.38336 * 120.02878 * 359.69909 * 15 14 13 17 17 F 1.35093 * 120.05149 * 180.28118 * 16 15 14 18 18 N 1.30492 * 107.36858 * 180.02562 * 8 7 4 19 19 N 1.28533 * 110.06174 * 0.02562 * 18 8 7 20 20 C 1.31404 * 109.79223 * 359.71678 * 19 18 8 21 21 S 1.76195 * 126.48954 * 180.31298 * 20 19 18 22 22 C 1.76202 * 100.00406 * 0.15333 * 21 20 19 23 23 H 1.08000 * 119.99202 * 359.97438 * 22 21 20 24 24 C 1.38665 * 120.00303 * 179.97438 * 22 21 20 25 25 N 1.31639 * 120.00266 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 120.00040 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47072 * 89.99871 * 26 24 22 28 28 H 1.48497 * 109.47165 * 209.99940 * 26 24 22 29 29 H 1.48499 * 109.47411 * 329.99750 * 26 24 22 30 30 H 1.09004 * 109.47142 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47289 * 300.00180 * 1 2 3 32 32 H 1.09000 * 109.46839 * 59.99854 * 1 2 3 33 33 H 1.09000 * 109.47249 * 60.00056 * 3 2 1 34 34 H 1.08996 * 109.47475 * 299.99601 * 3 2 1 35 35 H 1.09002 * 109.47153 * 60.00231 * 6 4 3 36 36 H 1.08998 * 109.47533 * 179.97438 * 6 4 3 37 37 H 1.08996 * 109.47853 * 300.00202 * 6 4 3 38 38 H 1.08999 * 109.46844 * 209.99900 * 9 8 7 39 39 H 1.08996 * 109.47181 * 330.00284 * 9 8 7 40 40 H 1.08003 * 120.02078 * 0.02562 * 12 11 10 41 41 H 1.08001 * 119.95147 * 180.02562 * 13 12 11 42 42 H 1.08004 * 119.93721 * 179.97438 * 14 13 12 43 43 H 1.08004 * 119.98694 * 180.02562 * 15 14 13 44 44 H 0.96994 * 120.00394 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8514 0.5682 -0.8410 6 6 4.1573 2.5768 -0.1251 7 7 3.9757 0.5643 1.2528 8 6 4.6734 -0.6000 1.3943 9 6 5.1424 -1.5005 0.2807 10 8 6.4485 -1.0995 -0.1382 11 6 7.0213 -1.8145 -1.1427 12 6 6.3407 -2.8797 -1.7125 13 6 6.9245 -3.6049 -2.7337 14 6 8.1867 -3.2702 -3.1880 15 6 8.8688 -2.2088 -2.6226 16 6 8.2866 -1.4751 -1.6045 17 9 8.9504 -0.4344 -1.0557 18 7 4.8596 -0.7897 2.6719 19 7 4.3291 0.1703 3.3421 20 6 3.7767 1.0343 2.5205 21 16 2.9358 2.5163 2.9687 22 6 3.0887 2.4366 4.7223 23 1 3.6027 1.6056 5.1822 24 6 2.5490 3.4408 5.5117 25 7 2.6627 3.3810 6.8218 26 14 1.6593 4.8778 4.7162 27 1 0.2169 4.5522 4.5790 28 1 1.8153 6.0871 5.5638 29 1 2.2383 5.1364 3.3734 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8414 3.1933 0.7165 36 1 5.2439 2.4909 -0.1242 37 1 3.8299 3.0384 -1.0566 38 1 5.1750 -2.5306 0.6357 39 1 4.4529 -1.4277 -0.5603 40 1 5.3545 -3.1422 -1.3590 41 1 6.3940 -4.4343 -3.1777 42 1 8.6407 -3.8389 -3.9860 43 1 9.8546 -1.9490 -2.9795 44 1 2.2856 4.0836 7.3740 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003346740.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:50 Heat of formation + Delta-G solvation = -20.233119 kcal Electronic energy + Delta-G solvation = -30869.966736 eV Core-core repulsion = 26444.563810 eV Total energy + Delta-G solvation = -4425.402926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.115 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.90351 -42.32356 -40.19530 -38.22822 -37.71276 -35.57784 -32.62707 -31.83031 -30.99992 -30.78527 -29.81793 -27.66769 -27.09927 -25.75408 -25.36196 -23.57059 -23.05333 -22.70637 -21.27833 -20.38428 -18.75875 -17.96820 -17.45320 -17.11525 -16.65074 -16.51505 -16.38059 -15.98642 -15.65838 -15.39591 -15.22149 -15.16901 -14.88557 -14.77032 -14.66645 -14.45445 -13.30249 -13.18416 -13.06502 -12.92083 -12.83712 -12.66694 -12.42116 -12.27863 -11.97540 -11.85117 -11.64278 -11.48871 -11.47261 -11.32173 -11.28198 -10.91475 -10.80372 -10.13138 -9.99832 -9.89777 -9.69286 -9.55874 -9.26204 -8.99556 -8.95088 -8.46879 -7.13551 -6.42336 -4.23258 0.81351 0.95836 1.88955 2.12214 2.82817 3.04596 3.08597 3.14020 3.26992 3.27407 3.52198 3.62042 3.99142 4.03708 4.22340 4.34004 4.47156 4.60378 4.64705 4.67323 4.74793 4.83267 4.90664 4.94923 4.95771 5.02510 5.14825 5.23117 5.27594 5.33260 5.47050 5.55478 5.61203 5.65519 5.69344 5.73471 5.85935 5.95397 6.05506 6.07834 6.32721 6.34349 6.56788 6.97722 7.02474 7.20668 7.83301 8.64165 8.95884 9.32386 10.67047 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.002770 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.948381 B =10104.382035 C =10975.417211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.039 3.961 4 C 0.143 3.857 5 H 0.104 0.896 6 C -0.172 4.172 7 N -0.455 5.455 8 C 0.141 3.859 9 C 0.162 3.838 10 O -0.301 6.301 11 C 0.105 3.895 12 C -0.185 4.185 13 C -0.088 4.088 14 C -0.133 4.133 15 C -0.117 4.117 16 C 0.069 3.931 17 F -0.131 7.131 18 N -0.261 5.261 19 N -0.286 5.286 20 C 0.200 3.800 21 S 0.053 5.947 22 C -0.527 4.527 23 H 0.122 0.878 24 C 0.101 3.899 25 N -0.861 5.861 26 Si 0.841 3.159 27 H -0.263 1.263 28 H -0.264 1.264 29 H -0.240 1.240 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.125 -8.643 -24.982 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C -0.039 4.039 4 C 0.039 3.961 5 H 0.122 0.878 6 C -0.230 4.230 7 N -0.152 5.152 8 C -0.128 4.128 9 C 0.085 3.915 10 O -0.213 6.213 11 C 0.058 3.942 12 C -0.203 4.203 13 C -0.107 4.107 14 C -0.152 4.152 15 C -0.136 4.136 16 C 0.049 3.951 17 F -0.109 7.109 18 N -0.105 5.105 19 N -0.131 5.131 20 C -0.172 4.172 21 S 0.285 5.715 22 C -0.675 4.675 23 H 0.139 0.861 24 C -0.109 4.109 25 N -0.496 5.496 26 Si 0.666 3.334 27 H -0.188 1.188 28 H -0.189 1.189 29 H -0.164 1.164 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.203 -8.303 -23.995 25.487 hybrid contribution -0.542 0.644 -0.438 0.949 sum 1.661 -7.659 -24.434 25.660 Atomic orbital electron populations 1.22749 0.80537 1.02795 1.00288 1.87849 1.20172 1.27106 1.95537 1.23087 0.91963 0.86063 1.02819 1.21415 0.93540 0.96527 0.84667 0.87768 1.22207 1.02202 0.94329 1.04266 1.46263 1.43679 1.18671 1.06618 1.23646 1.03314 0.90666 0.95190 1.20624 0.81743 0.96405 0.92693 1.86260 1.32122 1.54166 1.48765 1.19056 0.92211 0.92898 0.90048 1.21244 1.01750 0.97070 1.00267 1.21022 0.95133 0.98950 0.95567 1.20923 0.95236 0.97733 1.01261 1.21037 1.01026 0.95968 0.95555 1.17053 0.89920 0.90150 0.97995 1.91528 1.79721 1.55066 1.84609 1.73990 1.16738 1.19523 1.00216 1.74891 1.14141 1.00054 1.23977 1.27364 1.04103 1.03674 0.82009 1.82551 1.64061 1.13355 1.11568 1.22601 1.43887 1.14796 0.86220 0.86055 1.24662 0.94783 0.97109 0.94379 1.69911 1.42711 1.33719 1.03254 0.87029 0.81619 0.83342 0.81445 1.18779 1.18882 1.16449 0.89644 0.93386 0.94148 0.90358 0.91215 0.89584 0.90712 0.90118 0.88448 0.90062 0.84258 0.84986 0.84903 0.84109 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.47 16 2 O -0.39 -5.41 10.65 -35.23 -0.38 -5.79 16 3 C 0.04 0.50 5.34 37.16 0.20 0.70 16 4 C 0.14 1.98 3.12 -67.93 -0.21 1.77 16 5 H 0.10 1.22 6.88 -51.93 -0.36 0.86 16 6 C -0.17 -2.17 9.23 37.16 0.34 -1.82 16 7 N -0.46 -8.46 2.60 -106.42 -0.28 -8.74 16 8 C 0.14 2.66 7.69 -154.10 -1.19 1.47 16 9 C 0.16 2.23 4.95 36.01 0.18 2.41 16 10 O -0.30 -4.50 9.99 -19.59 -0.20 -4.69 16 11 C 0.10 1.28 6.69 -39.18 -0.26 1.02 16 12 C -0.18 -1.69 9.04 -39.44 -0.36 -2.04 16 13 C -0.09 -0.64 10.04 -39.59 -0.40 -1.04 16 14 C -0.13 -0.94 10.04 -39.57 -0.40 -1.33 16 15 C -0.12 -1.03 10.02 -39.54 -0.40 -1.42 16 16 C 0.07 0.83 7.31 -39.30 -0.29 0.55 16 17 F -0.13 -1.89 17.11 2.25 0.04 -1.85 16 18 N -0.26 -6.04 12.18 32.97 0.40 -5.64 16 19 N -0.29 -7.36 11.05 30.72 0.34 -7.02 16 20 C 0.20 4.58 7.53 -88.12 -0.66 3.91 16 21 S 0.05 1.22 15.64 -107.50 -1.68 -0.46 16 22 C -0.53 -14.96 9.91 30.89 0.31 -14.66 16 23 H 0.12 3.90 7.16 -52.49 -0.38 3.52 16 24 C 0.10 2.81 5.50 -17.48 -0.10 2.72 16 25 N -0.86 -25.30 13.97 55.48 0.77 -24.53 16 26 Si 0.84 19.16 27.73 -169.99 -4.71 14.45 16 27 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 28 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 29 H -0.24 -5.08 6.74 56.52 0.38 -4.70 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 1.19 5.93 -51.93 -0.31 0.88 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.26 6.00 -51.93 -0.31 0.95 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.18 7.66 -51.93 -0.40 0.78 16 39 H 0.08 0.88 6.76 -51.93 -0.35 0.53 16 40 H 0.14 1.03 6.30 -52.48 -0.33 0.70 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 43 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -35.36 387.33 -7.36 -42.72 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.39 Total: 2.03 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -2.12 Total: -6.30 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 1.24 Total: -45.93 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -0.57 Total: -10.48 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.45 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -1.68 Total: -0.46 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.36 -7.36 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003346740.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.483 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds