Wall clock time and date at job start Tue Mar 31 2020 05:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46941 * 2 1 4 4 C 1.50703 * 109.46835 * 119.99682 * 2 1 3 5 5 C 1.38134 * 120.03545 * 300.02411 * 4 2 1 6 6 C 1.38256 * 120.06603 * 179.97438 * 5 4 2 7 7 C 1.38309 * 120.13807 * 0.02562 * 6 5 4 8 8 C 1.38098 * 120.06472 * 359.68375 * 7 6 5 9 9 C 1.38830 * 120.03007 * 120.00252 * 4 2 1 10 10 N 1.40138 * 120.06933 * 0.02562 * 9 4 2 11 11 C 1.36970 * 127.18683 * 270.03002 * 10 9 4 12 12 S 1.76201 * 126.40875 * 359.96168 * 11 10 9 13 13 C 1.76199 * 99.99986 * 179.71529 * 12 11 10 14 14 H 1.08002 * 120.00405 * 0.02562 * 13 12 11 15 15 C 1.38651 * 119.99946 * 179.72319 * 13 12 11 16 16 N 1.31644 * 119.99671 * 0.27764 * 15 13 12 17 17 Si 1.86803 * 120.00096 * 180.27923 * 15 13 12 18 18 H 1.48498 * 109.47174 * 90.00162 * 17 15 13 19 19 H 1.48501 * 109.47062 * 210.00113 * 17 15 13 20 20 H 1.48495 * 109.46833 * 329.99735 * 17 15 13 21 21 N 1.31592 * 107.18973 * 179.70280 * 11 10 9 22 22 N 1.28508 * 110.08212 * 0.26076 * 21 11 10 23 23 C 1.31521 * 110.01123 * 0.02562 * 22 21 11 24 24 C 1.47753 * 126.45658 * 180.02562 * 23 22 21 25 25 C 1.40051 * 120.56475 * 14.96977 * 24 23 22 26 26 C 1.38337 * 118.28795 * 180.02562 * 25 24 23 27 27 C 1.38366 * 119.31085 * 0.02562 * 26 25 24 28 28 N 1.31912 * 121.09172 * 0.02562 * 27 26 25 29 29 C 1.31702 * 121.88302 * 359.65025 * 28 27 26 30 30 H 1.09002 * 109.46763 * 60.00367 * 1 2 3 31 31 H 1.09000 * 109.47096 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47124 * 300.00396 * 1 2 3 33 33 H 1.09002 * 109.47124 * 239.99604 * 2 1 3 34 34 H 1.09001 * 109.46787 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47022 * 299.99932 * 3 2 1 36 36 H 1.09000 * 109.47276 * 60.00328 * 3 2 1 37 37 H 1.07999 * 119.96579 * 359.97438 * 5 4 2 38 38 H 1.08005 * 119.93701 * 179.97438 * 6 5 4 39 39 H 1.07992 * 119.97015 * 179.97438 * 7 6 5 40 40 H 1.07996 * 120.03813 * 180.31317 * 8 7 6 41 41 H 0.97005 * 119.99733 * 179.97438 * 16 15 13 42 42 H 1.07997 * 120.85648 * 0.02615 * 25 24 23 43 43 H 1.08003 * 120.34480 * 180.02562 * 26 25 24 44 44 H 1.08000 * 119.45027 * 179.97438 * 27 26 25 45 45 H 1.07997 * 119.72307 * 180.31918 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6986 -0.2393 2.4855 6 6 2.1586 -0.8908 3.6148 7 6 2.9544 -2.0154 3.4921 8 6 3.2864 -2.4946 2.2402 9 6 2.8305 -1.8392 1.1040 10 7 3.1709 -2.3195 -0.1677 11 6 2.4807 -3.2328 -0.9198 12 16 0.9797 -4.0381 -0.4690 13 6 0.7182 -5.0243 -1.9055 14 1 1.4228 -4.9851 -2.7231 15 6 -0.3889 -5.8554 -1.9838 16 7 -1.2475 -5.9035 -0.9870 17 14 -0.6620 -6.9068 -3.5035 18 1 0.0026 -8.2222 -3.3213 19 1 -2.1184 -7.1122 -3.7080 20 1 -0.0874 -6.2217 -4.6890 21 7 3.1451 -3.3922 -2.0444 22 7 4.1960 -2.6525 -2.0446 23 6 4.2694 -1.9744 -0.9201 24 6 5.3282 -1.0166 -0.5399 25 6 6.2112 -0.5119 -1.5028 26 6 7.1851 0.3818 -1.0948 27 6 7.2555 0.7448 0.2386 28 7 6.4109 0.2525 1.1242 29 6 5.4628 -0.5961 0.7843 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.0777 0.6388 2.5845 38 1 1.8967 -0.5204 4.5950 39 1 3.3125 -2.5219 4.3760 40 1 3.9036 -3.3757 2.1449 41 1 -2.0222 -6.4847 -1.0419 42 1 6.1337 -0.8127 -2.5371 43 1 7.8831 0.7920 -1.8095 44 1 8.0152 1.4421 0.5596 45 1 4.7868 -0.9734 1.5373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003357738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:38 Heat of formation + Delta-G solvation = 130.859233 kcal Electronic energy + Delta-G solvation = -30803.690622 eV Core-core repulsion = 26913.327438 eV Total energy + Delta-G solvation = -3890.363183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.121 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.39975 -39.93605 -39.62631 -35.43342 -34.53961 -33.08968 -32.72346 -31.79132 -30.18298 -29.35516 -29.00377 -27.07346 -25.78228 -24.29813 -23.86049 -23.56960 -23.09913 -21.48842 -20.65226 -20.04042 -18.56372 -17.57413 -17.01784 -16.48017 -16.23436 -16.03876 -15.58375 -15.16142 -14.98754 -14.68857 -14.29631 -14.08502 -13.90875 -13.88083 -13.68658 -13.55860 -13.12275 -13.06821 -12.56256 -12.30813 -12.16700 -11.90702 -11.82863 -11.48959 -11.20209 -11.12923 -11.08510 -10.96537 -10.80404 -10.61920 -10.47229 -10.32907 -10.16859 -9.88990 -9.71946 -9.57133 -9.32237 -8.94620 -8.88381 -8.73513 -8.52370 -6.82271 -6.52985 -4.27406 0.70331 1.03429 1.18549 1.25233 2.29857 2.35934 3.13797 3.15986 3.20666 3.29458 3.38696 3.53505 3.88621 3.96584 4.22488 4.53822 4.54449 4.69810 4.76795 4.85742 4.91270 4.93103 4.95098 4.98241 5.08130 5.21703 5.24480 5.32207 5.34739 5.38103 5.51526 5.65325 5.67524 5.80827 5.87142 5.88494 5.95574 6.00365 6.06181 6.09226 6.15072 6.27904 6.31306 6.36959 6.44439 6.50287 6.51597 6.57165 6.71129 7.40285 7.51251 7.86079 8.30857 8.98942 9.25692 10.54815 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.010480 B = 0.003866 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.119524 B = 7241.034730 C = 8480.913718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.062 4.062 3 C -0.138 4.138 4 C -0.047 4.047 5 C -0.108 4.108 6 C -0.101 4.101 7 C -0.114 4.114 8 C -0.101 4.101 9 C 0.119 3.881 10 N -0.432 5.432 11 C 0.186 3.814 12 S 0.160 5.840 13 C -0.539 4.539 14 H 0.106 0.894 15 C 0.078 3.922 16 N -0.875 5.875 17 Si 0.932 3.068 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.265 1.265 21 N -0.302 5.302 22 N -0.261 5.261 23 C 0.176 3.824 24 C -0.039 4.039 25 C -0.046 4.046 26 C -0.169 4.169 27 C 0.091 3.909 28 N -0.477 5.477 29 C 0.102 3.898 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.275 0.725 42 H 0.145 0.855 43 H 0.139 0.861 44 H 0.156 0.844 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.885 14.658 8.283 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C -0.195 4.195 4 C -0.048 4.048 5 C -0.126 4.126 6 C -0.119 4.119 7 C -0.132 4.132 8 C -0.120 4.120 9 C 0.028 3.972 10 N -0.127 5.127 11 C -0.182 4.182 12 S 0.394 5.606 13 C -0.687 4.687 14 H 0.124 0.876 15 C -0.132 4.132 16 N -0.510 5.510 17 Si 0.757 3.243 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.189 1.189 21 N -0.148 5.148 22 N -0.102 5.102 23 C -0.090 4.090 24 C -0.044 4.044 25 C -0.074 4.074 26 C -0.189 4.189 27 C -0.067 4.067 28 N -0.185 5.185 29 C -0.058 4.058 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.085 0.915 42 H 0.163 0.837 43 H 0.157 0.843 44 H 0.173 0.827 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.367 14.292 8.766 18.738 hybrid contribution 0.150 -0.739 -1.632 1.797 sum 8.517 13.553 7.135 17.525 Atomic orbital electron populations 1.21849 0.93177 1.03439 1.01574 1.20139 0.96946 0.95768 0.95254 1.21805 1.00864 0.94905 1.01922 1.20007 0.95043 0.93777 0.95987 1.20900 1.00294 1.00456 0.90953 1.21262 0.96614 0.95248 0.98756 1.21024 0.98729 0.96849 0.96631 1.21295 0.99720 0.99459 0.91525 1.17335 1.01197 0.96101 0.82594 1.43527 1.19899 1.34958 1.14318 1.28693 1.03568 0.94896 0.91052 1.83665 1.08098 1.43779 1.25013 1.23263 1.13528 1.27760 1.04195 0.87644 1.25062 0.94168 0.96002 0.97922 1.69950 1.12539 1.37501 1.31038 0.85933 0.77464 0.79767 0.81177 1.19867 1.20612 1.18945 1.74822 1.02561 1.20352 1.17073 1.74225 1.14136 1.06095 1.15751 1.22372 0.91420 1.03847 0.91329 1.18510 0.94480 0.96390 0.95018 1.21659 0.92155 0.93380 1.00171 1.22072 0.99734 0.99323 0.97763 1.22845 0.96713 0.97524 0.89610 1.67689 1.03669 1.09484 1.37657 1.23252 0.95263 0.93320 0.93948 0.92274 0.91101 0.92577 0.90462 0.93028 0.92223 0.92331 0.85119 0.85279 0.84968 0.85171 0.91532 0.83681 0.84346 0.82696 0.82399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.01 37.16 0.33 -1.64 16 2 C -0.06 -0.91 3.05 -91.77 -0.28 -1.19 16 3 C -0.14 -1.65 9.01 37.16 0.33 -1.31 16 4 C -0.05 -0.67 4.80 -104.44 -0.50 -1.17 16 5 C -0.11 -1.24 8.71 -39.61 -0.35 -1.59 16 6 C -0.10 -1.04 10.04 -39.55 -0.40 -1.44 16 7 C -0.11 -1.28 10.04 -39.61 -0.40 -1.68 16 8 C -0.10 -1.44 8.38 -39.40 -0.33 -1.77 16 9 C 0.12 1.92 3.39 -83.61 -0.28 1.64 16 10 N -0.43 -8.32 1.65 -58.10 -0.10 -8.42 16 11 C 0.19 4.28 7.84 -87.67 -0.69 3.59 16 12 S 0.16 3.95 21.58 -107.50 -2.32 1.63 16 13 C -0.54 -14.85 9.37 30.88 0.29 -14.56 16 14 H 0.11 3.00 6.92 -52.49 -0.36 2.64 16 15 C 0.08 2.09 5.49 -17.48 -0.10 2.00 16 16 N -0.88 -24.03 13.22 55.48 0.73 -23.30 16 17 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 N -0.30 -7.45 11.02 30.82 0.34 -7.11 16 22 N -0.26 -5.76 12.04 32.61 0.39 -5.37 16 23 C 0.18 3.37 7.54 -153.62 -1.16 2.21 16 24 C -0.04 -0.61 5.89 -104.83 -0.62 -1.23 16 25 C -0.05 -0.61 9.84 -38.87 -0.38 -0.99 16 26 C -0.17 -1.75 10.10 -39.50 -0.40 -2.15 16 27 C 0.09 0.98 11.17 -17.47 -0.20 0.78 16 28 N -0.48 -6.44 10.35 -12.89 -0.13 -6.58 16 29 C 0.10 1.49 10.47 -17.10 -0.18 1.31 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.64 7.39 -51.93 -0.38 0.25 16 33 H 0.08 1.40 6.59 -51.93 -0.34 1.05 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.59 7.39 -51.93 -0.38 0.21 16 37 H 0.13 1.22 7.10 -52.49 -0.37 0.85 16 38 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.15 1.88 8.01 -52.49 -0.42 1.46 16 43 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 44 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.16 2.33 4.15 -52.49 -0.22 2.11 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -31.72 393.58 -10.89 -42.61 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.42 Total: 3.78 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -5.29 Total: -19.18 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 1.24 Total: -50.77 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -2.32 Total: 1.63 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.72 -10.89 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003357738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.472 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds