Wall clock time and date at job start Tue Mar 31 2020 05:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46941 * 2 1 4 4 C 1.50703 * 109.46835 * 119.99682 * 2 1 3 5 5 C 1.38134 * 120.03545 * 300.02411 * 4 2 1 6 6 C 1.38256 * 120.06603 * 179.97438 * 5 4 2 7 7 C 1.38309 * 120.13807 * 0.02562 * 6 5 4 8 8 C 1.38098 * 120.06472 * 359.68375 * 7 6 5 9 9 C 1.38830 * 120.03007 * 120.00252 * 4 2 1 10 10 N 1.40138 * 120.06933 * 0.02562 * 9 4 2 11 11 C 1.36970 * 127.18683 * 270.03002 * 10 9 4 12 12 S 1.76201 * 126.40875 * 359.96168 * 11 10 9 13 13 C 1.76199 * 99.99986 * 179.71529 * 12 11 10 14 14 H 1.08002 * 120.00405 * 0.02562 * 13 12 11 15 15 C 1.38651 * 119.99946 * 179.72319 * 13 12 11 16 16 N 1.31644 * 119.99671 * 0.27764 * 15 13 12 17 17 Si 1.86803 * 120.00096 * 180.27923 * 15 13 12 18 18 H 1.48498 * 109.47174 * 90.00162 * 17 15 13 19 19 H 1.48501 * 109.47062 * 210.00113 * 17 15 13 20 20 H 1.48495 * 109.46833 * 329.99735 * 17 15 13 21 21 N 1.31592 * 107.18973 * 179.70280 * 11 10 9 22 22 N 1.28508 * 110.08212 * 0.26076 * 21 11 10 23 23 C 1.31521 * 110.01123 * 0.02562 * 22 21 11 24 24 C 1.47753 * 126.45658 * 180.02562 * 23 22 21 25 25 C 1.40051 * 120.56475 * 14.96977 * 24 23 22 26 26 C 1.38337 * 118.28795 * 180.02562 * 25 24 23 27 27 C 1.38366 * 119.31085 * 0.02562 * 26 25 24 28 28 N 1.31912 * 121.09172 * 0.02562 * 27 26 25 29 29 C 1.31702 * 121.88302 * 359.65025 * 28 27 26 30 30 H 1.09002 * 109.46763 * 60.00367 * 1 2 3 31 31 H 1.09000 * 109.47096 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47124 * 300.00396 * 1 2 3 33 33 H 1.09002 * 109.47124 * 239.99604 * 2 1 3 34 34 H 1.09001 * 109.46787 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47022 * 299.99932 * 3 2 1 36 36 H 1.09000 * 109.47276 * 60.00328 * 3 2 1 37 37 H 1.07999 * 119.96579 * 359.97438 * 5 4 2 38 38 H 1.08005 * 119.93701 * 179.97438 * 6 5 4 39 39 H 1.07992 * 119.97015 * 179.97438 * 7 6 5 40 40 H 1.07996 * 120.03813 * 180.31317 * 8 7 6 41 41 H 0.97005 * 119.99733 * 179.97438 * 16 15 13 42 42 H 1.07997 * 120.85648 * 0.02615 * 25 24 23 43 43 H 1.08003 * 120.34480 * 180.02562 * 26 25 24 44 44 H 1.08000 * 119.45027 * 179.97438 * 27 26 25 45 45 H 1.07997 * 119.72307 * 180.31918 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6986 -0.2393 2.4855 6 6 2.1586 -0.8908 3.6148 7 6 2.9544 -2.0154 3.4921 8 6 3.2864 -2.4946 2.2402 9 6 2.8305 -1.8392 1.1040 10 7 3.1709 -2.3195 -0.1677 11 6 2.4807 -3.2328 -0.9198 12 16 0.9797 -4.0381 -0.4690 13 6 0.7182 -5.0243 -1.9055 14 1 1.4228 -4.9851 -2.7231 15 6 -0.3889 -5.8554 -1.9838 16 7 -1.2475 -5.9035 -0.9870 17 14 -0.6620 -6.9068 -3.5035 18 1 0.0026 -8.2222 -3.3213 19 1 -2.1184 -7.1122 -3.7080 20 1 -0.0874 -6.2217 -4.6890 21 7 3.1451 -3.3922 -2.0444 22 7 4.1960 -2.6525 -2.0446 23 6 4.2694 -1.9744 -0.9201 24 6 5.3282 -1.0166 -0.5399 25 6 6.2112 -0.5119 -1.5028 26 6 7.1851 0.3818 -1.0948 27 6 7.2555 0.7448 0.2386 28 7 6.4109 0.2525 1.1242 29 6 5.4628 -0.5961 0.7843 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.0777 0.6388 2.5845 38 1 1.8967 -0.5204 4.5950 39 1 3.3125 -2.5219 4.3760 40 1 3.9036 -3.3757 2.1449 41 1 -2.0222 -6.4847 -1.0419 42 1 6.1337 -0.8127 -2.5371 43 1 7.8831 0.7920 -1.8095 44 1 8.0152 1.4421 0.5596 45 1 4.7868 -0.9734 1.5373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003357738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:37 Heat of formation + Delta-G solvation = 115.297397 kcal Electronic energy + Delta-G solvation = -30804.365433 eV Core-core repulsion = 26913.327438 eV Total energy + Delta-G solvation = -3891.037995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.121 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.96627 -41.02635 -40.69176 -36.48782 -35.92121 -34.77743 -34.27976 -32.85863 -31.22239 -30.60287 -30.38858 -28.11806 -27.83090 -25.58604 -25.01743 -24.60376 -24.22573 -22.98427 -21.98807 -21.13719 -20.14583 -19.13180 -18.07915 -17.74439 -17.53416 -17.17364 -17.00321 -16.75311 -16.58281 -16.02687 -15.31762 -15.14146 -15.05054 -14.95873 -14.83114 -14.78773 -14.57953 -14.14459 -13.57153 -13.54932 -13.19641 -13.16244 -13.07596 -13.03637 -12.88775 -12.77861 -12.50356 -12.20662 -12.12409 -12.07552 -11.92583 -11.87108 -11.73477 -11.35661 -11.17429 -10.91079 -10.72604 -10.59729 -9.95726 -9.92907 -9.78444 -8.71459 -8.55959 -6.35043 -0.44053 -0.01209 0.16784 0.26866 0.60550 0.84967 1.33635 1.36647 1.49128 1.63307 1.76506 2.09823 2.56007 2.78937 2.84732 2.96797 3.03342 3.47970 3.49081 3.66040 3.72595 3.80831 3.96586 3.97514 4.14089 4.17688 4.23011 4.30743 4.36558 4.37912 4.38433 4.56911 4.64698 4.67565 4.68655 4.76081 4.84327 4.85262 4.96113 5.05493 5.08383 5.13987 5.16164 5.30343 5.30496 5.42395 5.42765 5.45581 5.59135 5.73194 6.06470 6.17163 6.84268 6.91391 7.56996 8.53338 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.010480 B = 0.003866 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.119524 B = 7241.034730 C = 8480.913718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.061 4.061 3 C -0.127 4.127 4 C -0.058 4.058 5 C -0.106 4.106 6 C -0.084 4.084 7 C -0.107 4.107 8 C -0.118 4.118 9 C 0.079 3.921 10 N -0.417 5.417 11 C 0.172 3.828 12 S 0.137 5.863 13 C -0.565 4.565 14 H 0.084 0.916 15 C 0.037 3.963 16 N -0.901 5.901 17 Si 0.993 3.007 18 H -0.265 1.265 19 H -0.263 1.263 20 H -0.272 1.272 21 N -0.341 5.341 22 N -0.303 5.303 23 C 0.205 3.795 24 C -0.076 4.076 25 C -0.051 4.051 26 C -0.153 4.153 27 C 0.106 3.894 28 N -0.490 5.490 29 C 0.106 3.894 30 H 0.062 0.938 31 H 0.035 0.965 32 H 0.088 0.912 33 H 0.028 0.972 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.162 0.838 38 H 0.173 0.827 39 H 0.164 0.836 40 H 0.117 0.883 41 H 0.282 0.718 42 H 0.141 0.859 43 H 0.182 0.818 44 H 0.201 0.799 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.322 17.822 10.765 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.080 4.080 3 C -0.184 4.184 4 C -0.059 4.059 5 C -0.124 4.124 6 C -0.102 4.102 7 C -0.125 4.125 8 C -0.137 4.137 9 C -0.011 4.011 10 N -0.108 5.108 11 C -0.199 4.199 12 S 0.369 5.631 13 C -0.713 4.713 14 H 0.102 0.898 15 C -0.170 4.170 16 N -0.536 5.536 17 Si 0.814 3.186 18 H -0.190 1.190 19 H -0.187 1.187 20 H -0.196 1.196 21 N -0.186 5.186 22 N -0.143 5.143 23 C -0.062 4.062 24 C -0.081 4.081 25 C -0.079 4.079 26 C -0.172 4.172 27 C -0.052 4.052 28 N -0.198 5.198 29 C -0.053 4.053 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.179 0.821 38 H 0.191 0.809 39 H 0.181 0.819 40 H 0.135 0.865 41 H 0.091 0.909 42 H 0.159 0.841 43 H 0.199 0.801 44 H 0.217 0.783 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.836 17.485 11.269 23.010 hybrid contribution -0.002 -1.434 -2.263 2.679 sum 9.834 16.051 9.006 20.867 Atomic orbital electron populations 1.21810 0.92739 1.01655 1.03322 1.20065 0.97245 0.97015 0.93637 1.21734 1.00035 0.93145 1.03531 1.20113 0.95172 0.93484 0.97165 1.21293 0.99977 1.01240 0.89863 1.21773 0.94386 0.93813 1.00223 1.21420 0.97984 0.97049 0.96073 1.21365 1.00451 0.99447 0.92444 1.17731 1.03991 0.97948 0.81412 1.43613 1.18835 1.33249 1.15150 1.28288 1.03467 0.96412 0.91740 1.83271 1.10153 1.44966 1.24694 1.23339 1.13907 1.29245 1.04837 0.89805 1.25885 0.93555 0.96782 1.00774 1.70007 1.12959 1.38182 1.32498 0.85032 0.78197 0.78080 0.77245 1.19000 1.18701 1.19637 1.74676 1.03756 1.21673 1.18476 1.74130 1.14348 1.07978 1.17850 1.23116 0.91138 1.01943 0.90025 1.18613 0.95150 0.97798 0.96580 1.21851 0.92427 0.93898 0.99691 1.22498 0.98716 0.97337 0.98619 1.23667 0.95901 0.96302 0.89321 1.67788 1.03968 1.09587 1.38476 1.23169 0.95594 0.93365 0.93151 0.91944 0.94591 0.89331 0.95366 0.94139 0.91810 0.89446 0.82062 0.80931 0.81881 0.86517 0.90901 0.84112 0.80082 0.78269 0.82788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.01 71.98 0.65 -3.21 16 2 C -0.06 -1.81 3.05 -11.54 -0.04 -1.85 16 3 C -0.13 -2.89 9.01 71.98 0.65 -2.24 16 4 C -0.06 -1.66 4.80 -19.75 -0.09 -1.75 16 5 C -0.11 -2.13 8.71 22.25 0.19 -1.94 16 6 C -0.08 -1.41 10.04 22.29 0.22 -1.18 16 7 C -0.11 -2.16 10.04 22.25 0.22 -1.93 16 8 C -0.12 -3.42 8.38 22.39 0.19 -3.23 16 9 C 0.08 2.65 3.39 38.11 0.13 2.78 16 10 N -0.42 -17.29 1.65 -337.74 -0.56 -17.85 16 11 C 0.17 8.66 7.84 179.32 1.41 10.06 16 12 S 0.14 7.31 21.58 -56.49 -1.22 6.09 16 13 C -0.56 -33.38 9.37 67.92 0.64 -32.74 16 14 H 0.08 5.19 6.92 -2.91 -0.02 5.17 16 15 C 0.04 2.06 5.49 84.82 0.47 2.53 16 16 N -0.90 -51.20 13.22 21.62 0.29 -50.91 16 17 Si 0.99 44.59 29.55 68.60 2.03 46.62 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 N -0.34 -18.41 11.02 -56.42 -0.62 -19.03 16 22 N -0.30 -14.53 12.04 -50.76 -0.61 -15.14 16 23 C 0.21 8.42 7.54 136.12 1.03 9.45 16 24 C -0.08 -2.46 5.89 -20.00 -0.12 -2.57 16 25 C -0.05 -1.32 9.84 22.73 0.22 -1.10 16 26 C -0.15 -2.61 10.10 22.32 0.23 -2.38 16 27 C 0.11 1.82 11.17 84.71 0.95 2.77 16 28 N -0.49 -11.90 10.35 -194.70 -2.01 -13.92 16 29 C 0.11 3.04 10.47 85.04 0.89 3.93 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.84 7.39 -2.39 -0.02 1.82 16 33 H 0.03 1.10 6.59 -2.39 -0.02 1.08 16 34 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 1.46 7.39 -2.39 -0.02 1.44 16 37 H 0.16 2.24 7.10 -2.91 -0.02 2.22 16 38 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 40 H 0.12 3.57 8.06 -2.91 -0.02 3.55 16 41 H 0.28 14.72 8.31 -92.70 -0.77 13.95 16 42 H 0.14 3.73 8.01 -2.91 -0.02 3.70 16 43 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 44 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 45 H 0.16 4.52 4.15 -2.91 -0.01 4.50 16 Total: -1.00 -78.03 393.58 6.14 -71.89 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 1.03 Total: 16.86 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 7.83 Total: -24.60 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -3.52 Total: -116.85 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 7.31 SS G_CDS: -1.22 Total: 6.09 kcal Total: -78.03 6.14 -71.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003357738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.186 kcal (2) G-P(sol) polarization free energy of solvation -78.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds