Wall clock time and date at job start Tue Mar 31 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35946 * 116.99947 * 2 1 4 4 C 1.38075 * 120.00446 * 0.23315 * 3 2 1 5 5 C 1.39978 * 119.84218 * 180.23469 * 4 3 2 6 6 C 1.46961 * 120.08193 * 179.78772 * 5 4 3 7 7 C 1.35026 * 119.99896 * 179.71900 * 6 5 4 8 8 C 1.46259 * 119.99797 * 179.97438 * 7 6 5 9 9 O 1.21720 * 119.99992 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00114 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99953 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47229 * 324.99775 * 11 10 8 13 13 C 1.52999 * 109.47200 * 85.00258 * 11 10 8 14 14 C 1.50707 * 109.46873 * 204.99984 * 11 10 8 15 15 C 1.38235 * 120.00247 * 319.73054 * 14 11 10 16 16 C 1.38224 * 119.99944 * 179.80871 * 15 14 11 17 17 C 1.38231 * 120.00201 * 0.39835 * 16 15 14 18 18 C 1.38235 * 120.00141 * 359.85509 * 17 16 15 19 19 C 1.38236 * 119.99966 * 359.95495 * 18 17 16 20 20 C 1.40040 * 119.83803 * 359.51138 * 5 4 3 21 21 C 1.37646 * 120.00242 * 0.25518 * 20 5 4 22 22 C 1.39061 * 120.15696 * 359.97438 * 21 20 5 23 23 O 1.35613 * 119.91543 * 180.02562 * 22 21 20 24 24 C 1.34756 * 117.00222 * 354.37602 * 23 22 21 25 25 H 1.08003 * 120.00482 * 5.06511 * 24 23 22 26 26 C 1.38709 * 120.00253 * 185.06799 * 24 23 22 27 27 N 1.31524 * 119.99853 * 359.97438 * 26 24 23 28 28 Si 1.86802 * 120.00102 * 180.02562 * 26 24 23 29 29 H 1.48496 * 109.47274 * 359.97438 * 28 26 24 30 30 H 1.48503 * 109.47127 * 119.99815 * 28 26 24 31 31 H 1.48498 * 109.46947 * 239.99431 * 28 26 24 32 32 H 1.09000 * 109.47666 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46838 * 300.00116 * 1 2 3 34 34 H 1.09000 * 109.47017 * 59.99733 * 1 2 3 35 35 H 1.08004 * 120.08125 * 0.02562 * 4 3 2 36 36 H 1.07997 * 119.99937 * 359.72346 * 6 5 4 37 37 H 1.07997 * 120.00168 * 0.02562 * 7 6 5 38 38 H 0.96998 * 119.99656 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.46898 * 59.99629 * 13 11 10 40 40 H 1.08994 * 109.47373 * 179.97438 * 13 11 10 41 41 H 1.08999 * 109.46920 * 300.00245 * 13 11 10 42 42 H 1.08000 * 119.99636 * 359.97438 * 15 14 11 43 43 H 1.08005 * 120.00001 * 180.22560 * 16 15 14 44 44 H 1.08002 * 120.00228 * 179.83558 * 17 16 15 45 45 H 1.07995 * 120.00519 * 179.97438 * 18 17 16 46 46 H 1.07997 * 120.00524 * 180.02562 * 19 18 17 47 47 H 1.07998 * 119.99719 * 180.23246 * 20 5 4 48 48 H 1.07997 * 119.91749 * 180.02562 * 21 20 5 49 49 H 0.97003 * 119.99794 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3693 0.0049 5 6 1.9332 3.6147 -0.0001 6 6 1.1381 4.8507 0.0003 7 6 1.7562 6.0511 0.0012 8 6 0.9648 7.2811 0.0011 9 8 -0.2510 7.2225 0.0006 10 7 1.5817 8.4794 0.0015 11 6 0.7890 9.7114 0.0019 12 1 -0.1155 9.5616 -0.5876 13 6 0.4074 10.0718 1.4390 14 6 1.6001 10.8308 -0.5982 15 6 2.9452 10.9461 -0.3010 16 6 3.6900 11.9705 -0.8546 17 6 3.0880 12.8846 -1.6989 18 6 1.7418 12.7724 -1.9920 19 6 0.9977 11.7456 -1.4415 20 6 3.3321 3.6802 0.0003 21 6 4.0753 2.5216 0.0004 22 6 3.4405 1.2844 0.0005 23 8 4.1775 0.1460 0.0011 24 6 5.5131 0.2818 -0.1162 25 1 5.9574 1.2662 -0.1227 26 6 6.3174 -0.8427 -0.2285 27 7 5.7765 -2.0415 -0.2201 28 14 8.1688 -0.6544 -0.3903 29 1 8.5232 0.7875 -0.3729 30 1 8.8373 -1.3426 0.7431 31 1 8.6178 -1.2586 -1.6704 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 0.2156 2.3144 0.0091 36 1 0.0594 4.7987 0.0000 37 1 2.8349 6.1031 0.0012 38 1 2.5506 8.5260 0.0015 39 1 1.3120 10.2215 2.0285 40 1 -0.1820 10.9886 1.4394 41 1 -0.1792 9.2621 1.8731 42 1 3.4147 10.2342 0.3617 43 1 4.7418 12.0585 -0.6252 44 1 3.6693 13.6866 -2.1293 45 1 1.2713 13.4868 -2.6513 46 1 -0.0540 11.6577 -1.6708 47 1 3.8278 4.6397 0.0003 48 1 5.1540 2.5737 0.0011 49 1 6.3390 -2.8279 -0.2991 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003361500.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:49 Heat of formation + Delta-G solvation = -32.593006 kcal Electronic energy + Delta-G solvation = -30713.374646 eV Core-core repulsion = 26378.992452 eV Total energy + Delta-G solvation = -4334.382194 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.29383 -39.72556 -39.05858 -37.68358 -36.62744 -35.63701 -33.08015 -32.34057 -31.81987 -31.21518 -29.77162 -29.50449 -28.53988 -26.58752 -25.59975 -24.51793 -23.39829 -22.91700 -21.82104 -21.28921 -20.43956 -19.38945 -18.23151 -17.79803 -17.59168 -16.75201 -16.37242 -15.86441 -15.53431 -15.33682 -15.21642 -14.89235 -14.74075 -14.72891 -14.33264 -13.99402 -13.81275 -13.74063 -13.67998 -13.60063 -13.47159 -13.34619 -12.64975 -12.45615 -12.38520 -12.16444 -11.92278 -11.80464 -11.72111 -11.46967 -11.41836 -11.14756 -11.12603 -11.03757 -10.79599 -10.69177 -10.50564 -9.84452 -9.59111 -9.44702 -9.30400 -9.25996 -9.05156 -8.84194 -7.99604 -6.92635 -6.63118 -4.14321 0.94055 1.01308 1.02610 2.10100 2.52371 3.03795 3.04889 3.10812 3.15289 3.45307 3.57107 3.81822 3.93418 4.24338 4.45690 4.50035 4.62567 4.75158 4.88084 4.92657 4.99971 5.00775 5.05339 5.14067 5.20576 5.21146 5.39364 5.44300 5.53742 5.55163 5.57805 5.60340 5.61738 5.69782 5.72117 5.82590 5.93369 5.98760 6.07806 6.14489 6.14714 6.19446 6.37547 6.42925 6.48475 6.58111 6.60899 6.83353 6.99277 7.07732 7.24696 7.45638 7.52638 7.77531 8.06595 8.32141 8.80105 9.49036 10.52762 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.001748 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.376724 B =16012.809429 C =18226.378692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.167 4.167 6 C 0.037 3.963 7 C -0.279 4.279 8 C 0.558 3.442 9 O -0.558 6.558 10 N -0.728 5.728 11 C 0.183 3.817 12 H 0.095 0.905 13 C -0.157 4.157 14 C -0.089 4.089 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.122 4.122 18 C -0.117 4.117 19 C -0.109 4.109 20 C -0.059 4.059 21 C -0.225 4.225 22 C 0.149 3.851 23 O -0.147 6.147 24 C -0.390 4.390 25 H 0.098 0.902 26 C 0.041 3.959 27 N -0.844 5.844 28 Si 0.945 3.055 29 H -0.264 1.264 30 H -0.274 1.274 31 H -0.274 1.274 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.399 0.601 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.116 0.884 48 H 0.137 0.863 49 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.040 24.217 -0.550 24.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.155 4.155 5 C -0.168 4.168 6 C 0.017 3.983 7 C -0.300 4.300 8 C 0.350 3.650 9 O -0.439 6.439 10 N -0.380 5.380 11 C 0.079 3.921 12 H 0.113 0.887 13 C -0.216 4.216 14 C -0.089 4.089 15 C -0.132 4.132 16 C -0.134 4.134 17 C -0.140 4.140 18 C -0.135 4.135 19 C -0.127 4.127 20 C -0.077 4.077 21 C -0.245 4.245 22 C 0.092 3.908 23 O -0.048 6.048 24 C -0.466 4.466 25 H 0.115 0.885 26 C -0.166 4.166 27 N -0.476 5.476 28 Si 0.769 3.231 29 H -0.188 1.188 30 H -0.199 1.199 31 H -0.199 1.199 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.234 0.766 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.134 0.866 48 H 0.155 0.845 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.777 23.445 -0.541 24.410 hybrid contribution 1.247 0.363 -0.095 1.303 sum -5.530 23.807 -0.636 24.449 Atomic orbital electron populations 1.22919 0.80156 1.03080 1.00427 1.86234 1.19585 1.26200 1.89713 1.18044 0.89373 0.84612 1.07293 1.20885 0.98610 0.90922 1.05123 1.18171 0.92779 0.91413 1.14445 1.22230 0.99126 0.90944 0.86012 1.22447 0.99811 0.91610 1.16155 1.18406 0.87682 0.83834 0.75072 1.90767 1.14200 1.87689 1.51198 1.46018 1.10070 1.05081 1.76879 1.19726 0.93975 0.81598 0.96837 0.88686 1.22162 1.01922 1.02066 0.95410 1.19988 0.94429 0.96756 0.97748 1.20958 0.93603 0.98553 1.00101 1.21158 0.99967 0.94934 0.97330 1.21195 0.95109 0.99252 0.98431 1.21157 0.94357 0.98190 0.99817 1.21032 1.00140 0.94830 0.96745 1.20932 0.92500 0.97352 0.96964 1.20834 1.00716 0.90748 1.12155 1.18887 0.88276 0.87650 0.96009 1.83988 1.19748 1.25868 1.75214 1.21567 0.78364 0.95104 1.51538 0.88457 1.25423 1.00916 0.94154 0.96112 1.70060 1.36569 0.97824 1.43167 0.85580 0.79904 0.79103 0.78484 1.18832 1.19918 1.19909 0.88959 0.93450 0.93421 0.85845 0.85968 0.85825 0.76564 0.92310 0.91665 0.91433 0.86006 0.85851 0.86048 0.85905 0.85792 0.86621 0.84508 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.46 10.28 -34.19 -0.35 -6.81 16 3 C 0.05 1.11 6.70 -39.13 -0.26 0.85 16 4 C -0.14 -2.45 8.77 -38.99 -0.34 -2.79 16 5 C -0.17 -2.87 5.87 -105.04 -0.62 -3.48 16 6 C 0.04 0.56 9.45 -37.19 -0.35 0.20 16 7 C -0.28 -3.80 9.41 -37.50 -0.35 -4.15 16 8 C 0.56 7.72 7.70 -13.04 -0.10 7.62 16 9 O -0.56 -9.48 15.89 5.17 0.08 -9.40 16 10 N -0.73 -7.65 5.02 -56.37 -0.28 -7.94 16 11 C 0.18 1.77 2.78 -69.08 -0.19 1.58 16 12 H 0.10 1.05 7.44 -51.93 -0.39 0.67 16 13 C -0.16 -1.41 9.46 37.16 0.35 -1.05 16 14 C -0.09 -0.75 4.95 -104.62 -0.52 -1.27 16 15 C -0.11 -0.88 9.05 -39.59 -0.36 -1.23 16 16 C -0.12 -0.82 10.05 -39.59 -0.40 -1.22 16 17 C -0.12 -0.83 10.05 -39.59 -0.40 -1.23 16 18 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 19 C -0.11 -0.86 9.67 -39.58 -0.38 -1.24 16 20 C -0.06 -1.03 9.40 -39.12 -0.37 -1.40 16 21 C -0.22 -4.62 9.14 -39.49 -0.36 -4.98 16 22 C 0.15 3.53 6.67 -38.76 -0.26 3.27 16 23 O -0.15 -4.12 9.52 -13.94 -0.13 -4.25 16 24 C -0.39 -10.43 9.48 30.91 0.29 -10.13 16 25 H 0.10 2.36 5.18 -52.48 -0.27 2.08 16 26 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 27 N -0.84 -23.91 13.67 55.48 0.76 -23.15 16 28 Si 0.95 19.47 29.55 -169.99 -5.02 14.44 16 29 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 30 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 31 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 34 H 0.05 0.63 7.67 -51.93 -0.40 0.23 16 35 H 0.12 1.87 6.28 -52.48 -0.33 1.54 16 36 H 0.12 1.83 7.52 -52.49 -0.39 1.43 16 37 H 0.12 1.46 6.06 -52.49 -0.32 1.14 16 38 H 0.40 3.34 6.86 -40.82 -0.28 3.06 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.12 0.77 6.93 -52.49 -0.36 0.41 16 43 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 44 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 46 H 0.12 0.82 8.04 -52.49 -0.42 0.40 16 47 H 0.12 1.65 6.15 -52.49 -0.32 1.33 16 48 H 0.14 2.73 5.62 -52.49 -0.29 2.44 16 49 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 415.66 15.07 6.26 6.26 Total: -1.00 -32.88 415.66 -9.08 -41.95 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.27 Total: 8.37 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -4.12 Total: -19.48 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.48 Total: -31.09 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.40 Total: -20.46 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.88 -9.08 -41.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003361500.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.360 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds