Wall clock time and date at job start Tue Mar 31 2020 06:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35946 * 116.99947 * 2 1 4 4 C 1.38075 * 120.00446 * 0.23315 * 3 2 1 5 5 C 1.39978 * 119.84218 * 180.23469 * 4 3 2 6 6 C 1.46961 * 120.08193 * 179.78772 * 5 4 3 7 7 C 1.35026 * 119.99896 * 179.71900 * 6 5 4 8 8 C 1.46259 * 119.99797 * 179.97438 * 7 6 5 9 9 O 1.21720 * 119.99992 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00114 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99953 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47229 * 324.99775 * 11 10 8 13 13 C 1.52999 * 109.47200 * 85.00258 * 11 10 8 14 14 C 1.50707 * 109.46873 * 204.99984 * 11 10 8 15 15 C 1.38235 * 120.00247 * 319.73054 * 14 11 10 16 16 C 1.38224 * 119.99944 * 179.80871 * 15 14 11 17 17 C 1.38231 * 120.00201 * 0.39835 * 16 15 14 18 18 C 1.38235 * 120.00141 * 359.85509 * 17 16 15 19 19 C 1.38236 * 119.99966 * 359.95495 * 18 17 16 20 20 C 1.40040 * 119.83803 * 359.51138 * 5 4 3 21 21 C 1.37646 * 120.00242 * 0.25518 * 20 5 4 22 22 C 1.39061 * 120.15696 * 359.97438 * 21 20 5 23 23 O 1.35613 * 119.91543 * 180.02562 * 22 21 20 24 24 C 1.34756 * 117.00222 * 354.37602 * 23 22 21 25 25 H 1.08003 * 120.00482 * 5.06511 * 24 23 22 26 26 C 1.38709 * 120.00253 * 185.06799 * 24 23 22 27 27 N 1.31524 * 119.99853 * 359.97438 * 26 24 23 28 28 Si 1.86802 * 120.00102 * 180.02562 * 26 24 23 29 29 H 1.48496 * 109.47274 * 359.97438 * 28 26 24 30 30 H 1.48503 * 109.47127 * 119.99815 * 28 26 24 31 31 H 1.48498 * 109.46947 * 239.99431 * 28 26 24 32 32 H 1.09000 * 109.47666 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46838 * 300.00116 * 1 2 3 34 34 H 1.09000 * 109.47017 * 59.99733 * 1 2 3 35 35 H 1.08004 * 120.08125 * 0.02562 * 4 3 2 36 36 H 1.07997 * 119.99937 * 359.72346 * 6 5 4 37 37 H 1.07997 * 120.00168 * 0.02562 * 7 6 5 38 38 H 0.96998 * 119.99656 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.46898 * 59.99629 * 13 11 10 40 40 H 1.08994 * 109.47373 * 179.97438 * 13 11 10 41 41 H 1.08999 * 109.46920 * 300.00245 * 13 11 10 42 42 H 1.08000 * 119.99636 * 359.97438 * 15 14 11 43 43 H 1.08005 * 120.00001 * 180.22560 * 16 15 14 44 44 H 1.08002 * 120.00228 * 179.83558 * 17 16 15 45 45 H 1.07995 * 120.00519 * 179.97438 * 18 17 16 46 46 H 1.07997 * 120.00524 * 180.02562 * 19 18 17 47 47 H 1.07998 * 119.99719 * 180.23246 * 20 5 4 48 48 H 1.07997 * 119.91749 * 180.02562 * 21 20 5 49 49 H 0.97003 * 119.99794 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3693 0.0049 5 6 1.9332 3.6147 -0.0001 6 6 1.1381 4.8507 0.0003 7 6 1.7562 6.0511 0.0012 8 6 0.9648 7.2811 0.0011 9 8 -0.2510 7.2225 0.0006 10 7 1.5817 8.4794 0.0015 11 6 0.7890 9.7114 0.0019 12 1 -0.1155 9.5616 -0.5876 13 6 0.4074 10.0718 1.4390 14 6 1.6001 10.8308 -0.5982 15 6 2.9452 10.9461 -0.3010 16 6 3.6900 11.9705 -0.8546 17 6 3.0880 12.8846 -1.6989 18 6 1.7418 12.7724 -1.9920 19 6 0.9977 11.7456 -1.4415 20 6 3.3321 3.6802 0.0003 21 6 4.0753 2.5216 0.0004 22 6 3.4405 1.2844 0.0005 23 8 4.1775 0.1460 0.0011 24 6 5.5131 0.2818 -0.1162 25 1 5.9574 1.2662 -0.1227 26 6 6.3174 -0.8427 -0.2285 27 7 5.7765 -2.0415 -0.2201 28 14 8.1688 -0.6544 -0.3903 29 1 8.5232 0.7875 -0.3729 30 1 8.8373 -1.3426 0.7431 31 1 8.6178 -1.2586 -1.6704 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 0.2156 2.3144 0.0091 36 1 0.0594 4.7987 0.0000 37 1 2.8349 6.1031 0.0012 38 1 2.5506 8.5260 0.0015 39 1 1.3120 10.2215 2.0285 40 1 -0.1820 10.9886 1.4394 41 1 -0.1792 9.2621 1.8731 42 1 3.4147 10.2342 0.3617 43 1 4.7418 12.0585 -0.6252 44 1 3.6693 13.6866 -2.1293 45 1 1.2713 13.4868 -2.6513 46 1 -0.0540 11.6577 -1.6708 47 1 3.8278 4.6397 0.0003 48 1 5.1540 2.5737 0.0011 49 1 6.3390 -2.8279 -0.2991 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003361500.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:48 Heat of formation + Delta-G solvation = -51.722383 kcal Electronic energy + Delta-G solvation = -30714.204158 eV Core-core repulsion = 26378.992452 eV Total energy + Delta-G solvation = -4335.211706 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.34832 -41.09010 -39.90500 -39.31475 -38.10889 -36.54039 -34.62925 -33.93789 -32.71544 -31.76307 -31.27369 -30.33838 -29.80620 -27.88700 -27.37980 -25.52300 -24.34793 -23.62753 -23.31544 -22.38957 -21.33731 -20.56707 -19.94522 -19.32020 -18.59122 -17.79829 -17.52937 -17.06283 -16.73727 -16.68157 -16.32825 -16.09683 -15.90780 -15.57607 -15.53731 -15.42689 -15.27902 -15.04004 -14.85400 -14.55305 -14.24416 -14.06072 -13.93216 -13.65589 -13.38134 -13.29589 -13.20674 -13.09211 -12.87404 -12.72027 -12.56922 -12.48889 -12.13040 -12.12520 -12.00928 -11.95967 -11.75725 -11.33702 -11.00229 -10.99030 -10.53302 -10.16686 -9.82364 -9.66847 -9.47692 -8.53377 -8.47262 -6.11664 -0.31213 0.38480 0.49645 0.54465 1.10819 1.37285 1.47073 1.56201 2.17051 2.23559 2.35074 2.55225 2.86148 2.89376 3.14388 3.35603 3.57193 3.74440 3.92374 3.95187 4.13116 4.13607 4.21623 4.29253 4.31002 4.31704 4.34887 4.39668 4.41888 4.52598 4.61305 4.62692 4.64677 4.70862 4.74849 4.89856 4.92066 5.04768 5.07875 5.11352 5.14564 5.22061 5.29209 5.40462 5.45850 5.51418 5.56730 5.63712 5.70007 5.77512 5.92033 5.97956 6.09457 6.57125 6.59463 6.95372 7.26067 7.75696 8.74697 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.001748 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.376724 B =16012.809429 C =18226.378692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.038 3.962 4 C -0.134 4.134 5 C -0.133 4.133 6 C 0.013 3.987 7 C -0.239 4.239 8 C 0.553 3.447 9 O -0.590 6.590 10 N -0.711 5.711 11 C 0.185 3.815 12 H 0.078 0.922 13 C -0.152 4.152 14 C -0.100 4.100 15 C -0.121 4.121 16 C -0.123 4.123 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.066 4.066 21 C -0.218 4.218 22 C 0.101 3.899 23 O -0.212 6.212 24 C -0.414 4.414 25 H 0.111 0.889 26 C -0.023 4.023 27 N -0.914 5.914 28 Si 1.022 2.978 29 H -0.245 1.245 30 H -0.270 1.270 31 H -0.270 1.270 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.155 0.845 36 H 0.127 0.873 37 H 0.152 0.848 38 H 0.413 0.587 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.135 0.865 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.129 0.871 47 H 0.158 0.842 48 H 0.137 0.863 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 29.200 -0.705 29.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C -0.007 4.007 4 C -0.153 4.153 5 C -0.134 4.134 6 C -0.006 4.006 7 C -0.260 4.260 8 C 0.344 3.656 9 O -0.472 6.472 10 N -0.363 5.363 11 C 0.081 3.919 12 H 0.096 0.904 13 C -0.210 4.210 14 C -0.101 4.101 15 C -0.139 4.139 16 C -0.141 4.141 17 C -0.145 4.145 18 C -0.142 4.142 19 C -0.141 4.141 20 C -0.083 4.083 21 C -0.237 4.237 22 C 0.049 3.951 23 O -0.118 6.118 24 C -0.490 4.490 25 H 0.128 0.872 26 C -0.222 4.222 27 N -0.551 5.551 28 Si 0.841 3.159 29 H -0.168 1.168 30 H -0.195 1.195 31 H -0.196 1.196 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.172 0.828 36 H 0.145 0.855 37 H 0.169 0.831 38 H 0.250 0.750 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.152 0.848 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.147 0.853 47 H 0.175 0.825 48 H 0.155 0.845 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.781 28.534 -0.692 29.337 hybrid contribution 0.780 -0.537 -0.051 0.949 sum -6.001 27.997 -0.743 28.643 Atomic orbital electron populations 1.23276 0.77094 1.04987 1.02075 1.86188 1.22956 1.26871 1.89883 1.18378 0.89138 0.85798 1.07386 1.21258 1.00107 0.90056 1.03865 1.18538 0.93024 0.92018 1.09812 1.22126 0.99299 0.90377 0.88841 1.22799 1.01153 0.90983 1.11043 1.18496 0.87242 0.84765 0.75105 1.90774 1.15682 1.88201 1.52582 1.45940 1.10930 1.04550 1.74870 1.19723 0.93515 0.81536 0.97173 0.90361 1.22106 1.02244 1.01855 0.94826 1.19893 0.94816 0.96710 0.98651 1.21144 0.93281 0.99151 1.00359 1.21448 1.00940 0.94639 0.97063 1.21526 0.95242 0.99624 0.98064 1.21425 0.94668 0.98233 0.99884 1.21218 1.00708 0.95195 0.96931 1.21297 0.92583 0.97915 0.96543 1.21037 1.01117 0.90791 1.10755 1.19586 0.89547 0.88153 0.97808 1.83976 1.20266 1.27837 1.79695 1.22029 0.78801 0.95923 1.52220 0.87218 1.26699 1.06208 0.93555 0.95702 1.70216 1.38465 0.98840 1.47609 0.84488 0.73118 0.79961 0.78382 1.16771 1.19496 1.19554 0.87227 0.91586 0.91663 0.82752 0.85503 0.83097 0.74960 0.91300 0.90491 0.93357 0.84762 0.84069 0.84156 0.84223 0.85308 0.82490 0.84506 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 16 2 O -0.34 -15.23 10.28 -78.97 -0.81 -16.04 16 3 C 0.04 1.66 6.70 22.57 0.15 1.81 16 4 C -0.13 -4.59 8.77 22.65 0.20 -4.39 16 5 C -0.13 -4.15 5.87 -20.13 -0.12 -4.27 16 6 C 0.01 0.35 9.45 23.82 0.23 0.58 16 7 C -0.24 -5.37 9.41 23.62 0.22 -5.15 16 8 C 0.55 13.32 7.70 86.33 0.66 13.99 16 9 O -0.59 -18.58 15.89 -4.41 -0.07 -18.65 16 10 N -0.71 -12.45 5.02 -450.48 -2.26 -14.71 16 11 C 0.18 3.14 2.78 44.25 0.12 3.26 16 12 H 0.08 1.62 7.44 -2.39 -0.02 1.60 16 13 C -0.15 -2.38 9.46 71.98 0.68 -1.70 16 14 C -0.10 -1.44 4.95 -19.86 -0.10 -1.54 16 15 C -0.12 -1.46 9.05 22.27 0.20 -1.26 16 16 C -0.12 -1.33 10.05 22.26 0.22 -1.10 16 17 C -0.13 -1.33 10.05 22.27 0.22 -1.11 16 18 C -0.12 -1.42 10.05 22.27 0.22 -1.20 16 19 C -0.12 -1.66 9.67 22.27 0.22 -1.45 16 20 C -0.07 -2.09 9.40 22.57 0.21 -1.88 16 21 C -0.22 -8.92 9.14 22.33 0.20 -8.72 16 22 C 0.10 5.02 6.67 22.80 0.15 5.17 16 23 O -0.21 -12.81 9.52 -6.51 -0.06 -12.87 16 24 C -0.41 -23.55 9.48 67.93 0.64 -22.91 16 25 H 0.11 5.56 5.18 -2.91 -0.02 5.54 16 26 C -0.02 -1.30 5.49 84.85 0.47 -0.84 16 27 N -0.91 -55.98 13.67 21.62 0.30 -55.68 16 28 Si 1.02 41.64 29.55 68.60 2.03 43.67 16 29 H -0.24 -8.97 7.11 99.48 0.71 -8.26 16 30 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 31 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 32 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.07 1.63 7.65 -2.39 -0.02 1.61 16 34 H 0.06 1.62 7.67 -2.39 -0.02 1.60 16 35 H 0.16 4.23 6.28 -2.91 -0.02 4.22 16 36 H 0.13 3.34 7.52 -2.91 -0.02 3.31 16 37 H 0.15 2.59 6.06 -2.91 -0.02 2.57 16 38 H 0.41 5.08 6.86 -92.71 -0.64 4.44 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.13 1.18 6.93 -2.91 -0.02 1.16 16 43 H 0.14 0.96 8.06 -2.91 -0.02 0.93 16 44 H 0.14 0.88 8.06 -2.91 -0.02 0.86 16 45 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 46 H 0.13 1.51 8.04 -2.91 -0.02 1.49 16 47 H 0.16 3.65 6.15 -2.91 -0.02 3.63 16 48 H 0.14 5.50 5.62 -2.91 -0.02 5.48 16 49 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -79.36 415.66 5.41 -73.95 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.36 Total: 31.33 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 5.93 Total: -31.00 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -1.97 Total: -70.39 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -0.94 Total: -47.56 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -79.36 5.41 -73.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003361500.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.230 kcal (2) G-P(sol) polarization free energy of solvation -79.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds