Wall clock time and date at job start Tue Mar 31 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47152 * 2 1 4 4 C 1.35948 * 117.00395 * 179.97438 * 3 2 1 5 5 C 1.38744 * 119.99050 * 180.02562 * 4 3 2 6 6 C 1.38071 * 120.01027 * 180.02562 * 5 4 3 7 7 C 1.38840 * 119.98655 * 359.97438 * 6 5 4 8 8 N 1.40267 * 120.00880 * 180.02562 * 7 6 5 9 9 C 1.36939 * 127.17804 * 68.16209 * 8 7 6 10 10 S 1.76199 * 126.40408 * 359.96120 * 9 8 7 11 11 C 1.76209 * 100.00084 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99889 * 359.97438 * 11 10 9 13 13 C 1.38639 * 120.00072 * 180.02562 * 11 10 9 14 14 N 1.31645 * 119.99986 * 359.72969 * 13 11 10 15 15 Si 1.86796 * 119.99874 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47335 * 90.00299 * 15 13 11 17 17 H 1.48509 * 109.47152 * 210.00116 * 15 13 11 18 18 H 1.48496 * 109.47482 * 329.99848 * 15 13 11 19 19 N 1.31605 * 107.19589 * 180.22606 * 9 8 7 20 20 N 1.28513 * 110.06883 * 359.61770 * 19 9 8 21 21 C 1.31537 * 109.99884 * 0.39211 * 20 19 9 22 22 C 1.47754 * 126.45080 * 179.74144 * 21 20 19 23 23 C 1.39631 * 120.14687 * 17.56167 * 22 21 20 24 24 C 1.37938 * 119.84263 * 179.74544 * 23 22 21 25 25 C 1.38380 * 120.15404 * 0.53156 * 24 23 22 26 26 C 1.38366 * 120.29646 * 359.74057 * 25 24 23 27 27 C 1.37943 * 120.15473 * 359.97438 * 26 25 24 28 28 C 1.38836 * 119.98154 * 0.27688 * 7 6 5 29 29 C 1.38078 * 119.98222 * 359.44434 * 28 7 6 30 30 H 1.08998 * 109.46552 * 60.00747 * 1 2 3 31 31 H 1.09001 * 109.47084 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47345 * 300.00432 * 1 2 3 33 33 H 1.08997 * 109.47345 * 239.99568 * 2 1 3 34 34 H 1.09008 * 109.46982 * 119.99492 * 2 1 3 35 35 H 1.07997 * 119.99203 * 359.97438 * 5 4 3 36 36 H 1.07999 * 120.00249 * 179.97438 * 6 5 4 37 37 H 0.97005 * 120.00253 * 180.02562 * 14 13 11 38 38 H 1.07992 * 120.07599 * 359.97438 * 23 22 21 39 39 H 1.08006 * 119.92677 * 180.27701 * 24 23 22 40 40 H 1.07994 * 119.85270 * 179.72413 * 25 24 23 41 41 H 1.08000 * 119.92813 * 180.02562 * 26 25 24 42 42 H 1.07999 * 120.08064 * 180.02562 * 27 26 25 43 43 H 1.07993 * 120.00867 * 179.72414 * 28 7 6 44 44 H 1.07994 * 119.99106 * 180.27607 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3541 1.5255 0.0005 5 6 3.8841 2.8077 0.0011 6 6 5.2528 2.9891 0.0011 7 6 6.0988 1.8882 0.0011 8 7 7.4894 2.0720 0.0017 9 6 8.2562 2.5825 1.0149 10 16 7.6794 3.1410 2.5833 11 6 9.2053 3.6369 3.3117 12 1 10.1267 3.5339 2.7578 13 6 9.2233 4.1583 4.5962 14 7 8.0996 4.2879 5.2697 15 14 10.8410 4.6834 5.3685 16 1 11.1001 6.1110 5.0526 17 1 10.7664 4.5080 6.8413 18 1 11.9427 3.8485 4.8259 19 7 9.5038 2.5835 0.5960 20 7 9.5695 2.1056 -0.5951 21 6 8.3669 1.7772 -1.0150 22 6 8.0238 1.2007 -2.3314 23 6 9.0161 0.6171 -3.1216 24 6 8.6878 0.0761 -4.3473 25 6 7.3806 0.1204 -4.7990 26 6 6.3934 0.7022 -4.0235 27 6 6.7067 1.2419 -2.7932 28 6 5.5680 0.6054 -0.0047 29 6 4.1990 0.4250 0.0011 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 3.2259 3.6639 0.0007 36 1 5.6653 3.9873 0.0012 37 1 8.1121 4.6531 6.1683 38 1 10.0376 0.5862 -2.7724 39 1 9.4536 -0.3796 -4.9576 40 1 7.1298 -0.3007 -5.7613 41 1 5.3750 0.7332 -4.3817 42 1 5.9352 1.6953 -2.1887 43 1 6.2256 -0.2512 -0.0093 44 1 3.7860 -0.5728 0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003400033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:54 Heat of formation + Delta-G solvation = 90.049678 kcal Electronic energy + Delta-G solvation = -29525.841739 eV Core-core repulsion = 25535.990259 eV Total energy + Delta-G solvation = -3989.851480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.24438 -40.28990 -38.89662 -37.93660 -34.14482 -32.68936 -32.18483 -31.99696 -31.16359 -30.89337 -28.81114 -28.58503 -25.72279 -24.46019 -23.77956 -22.99080 -22.68134 -22.05109 -21.13458 -20.40004 -18.66466 -18.37008 -17.49291 -16.59728 -16.38310 -16.36725 -15.68199 -15.41845 -15.09985 -14.95549 -14.71207 -14.45814 -13.91228 -13.71850 -13.71680 -13.64839 -13.40646 -13.14413 -13.03377 -12.81826 -12.66302 -12.30325 -12.02809 -11.51015 -11.46025 -11.18103 -11.16854 -11.12520 -11.11062 -10.89036 -10.70951 -10.24497 -10.07123 -9.97161 -9.91063 -9.25006 -9.21762 -8.97009 -8.87558 -8.39735 -8.18189 -6.77123 -6.49411 -4.23691 0.90370 1.09942 1.15113 1.39221 2.35926 2.44943 2.91445 3.18721 3.20111 3.23560 3.32581 3.43557 3.49466 3.95088 3.99956 4.46962 4.53835 4.60060 4.65730 4.77854 4.85656 4.91255 4.91526 4.94683 5.01213 5.02572 5.10333 5.17901 5.29434 5.38114 5.41503 5.45544 5.50543 5.68021 5.75154 5.80872 5.84640 5.92019 6.07776 6.09965 6.11381 6.29781 6.40280 6.43812 6.45919 6.62188 6.67312 6.91054 7.13865 7.47534 7.54880 8.34759 9.02455 9.33505 10.58529 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.007371 B = 0.003640 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3797.716334 B = 7689.981175 C =11113.699618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.313 6.313 4 C 0.140 3.860 5 C -0.137 4.137 6 C -0.059 4.059 7 C 0.091 3.909 8 N -0.432 5.432 9 C 0.180 3.820 10 S 0.154 5.846 11 C -0.537 4.537 12 H 0.106 0.894 13 C 0.077 3.923 14 N -0.876 5.876 15 Si 0.932 3.068 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.265 1.265 19 N -0.303 5.303 20 N -0.265 5.265 21 C 0.175 3.825 22 C 0.009 3.991 23 C -0.085 4.085 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.113 4.113 28 C -0.059 4.059 29 C -0.197 4.197 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.275 0.725 38 H 0.134 0.866 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.089 -9.908 -15.456 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.226 6.226 4 C 0.094 3.906 5 C -0.156 4.156 6 C -0.078 4.078 7 C 0.000 4.000 8 N -0.126 5.126 9 C -0.188 4.188 10 S 0.388 5.612 11 C -0.686 4.686 12 H 0.124 0.876 13 C -0.133 4.133 14 N -0.511 5.511 15 Si 0.757 3.243 16 H -0.199 1.199 17 H -0.206 1.206 18 H -0.190 1.190 19 N -0.149 5.149 20 N -0.106 5.106 21 C -0.090 4.090 22 C 0.006 3.994 23 C -0.106 4.106 24 C -0.137 4.137 25 C -0.139 4.139 26 C -0.135 4.135 27 C -0.133 4.133 28 C -0.079 4.079 29 C -0.217 4.217 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.084 0.916 38 H 0.152 0.848 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.864 -9.401 -14.669 22.266 hybrid contribution 0.894 -0.134 0.125 0.912 sum -12.970 -9.535 -14.544 21.695 Atomic orbital electron populations 1.21776 0.92668 1.02867 1.03611 1.22829 0.95956 0.81907 1.01634 1.86092 1.18754 1.29424 1.88357 1.19019 0.82351 0.93971 0.95254 1.20279 0.94157 0.95253 1.05934 1.21078 0.92112 0.98886 0.95759 1.17349 0.80508 0.93908 1.08278 1.43597 1.05250 1.51130 1.12653 1.28675 0.90130 1.00921 0.99055 1.83630 1.13025 1.70052 0.94484 1.23258 0.94229 1.48308 1.02771 0.87628 1.25066 0.98525 0.94102 0.95559 1.69953 1.26326 1.42395 1.12461 0.85921 0.81363 0.79285 0.77691 1.19868 1.20646 1.18961 1.74815 1.14606 1.21227 1.04202 1.74243 1.17541 1.12670 1.06098 1.22694 0.86544 1.08153 0.91605 1.17511 0.93835 0.98647 0.89428 1.21222 0.99395 0.96200 0.93747 1.21064 0.96577 1.00112 0.95971 1.21212 0.93219 0.99806 0.99707 1.20972 0.99389 0.98911 0.94264 1.21443 0.95473 0.99759 0.96591 1.20946 0.94887 0.95852 0.96168 1.21049 0.93068 0.98486 1.09069 0.91526 0.90372 0.91377 0.91901 0.91738 0.84067 0.84155 0.91566 0.84819 0.85664 0.86105 0.85968 0.85639 0.85161 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.05 0.39 5.46 37.16 0.20 0.59 16 3 O -0.31 -3.36 10.14 -19.58 -0.20 -3.56 16 4 C 0.14 1.66 6.69 -39.21 -0.26 1.40 16 5 C -0.14 -1.72 9.98 -39.46 -0.39 -2.12 16 6 C -0.06 -0.87 9.67 -39.42 -0.38 -1.25 16 7 C 0.09 1.49 3.32 -83.55 -0.28 1.21 16 8 N -0.43 -8.63 2.85 -58.08 -0.17 -8.79 16 9 C 0.18 4.30 8.02 -87.69 -0.70 3.59 16 10 S 0.15 3.90 21.58 -107.50 -2.32 1.58 16 11 C -0.54 -15.10 9.37 30.88 0.29 -14.81 16 12 H 0.11 3.07 6.92 -52.49 -0.36 2.70 16 13 C 0.08 2.10 5.49 -17.48 -0.10 2.00 16 14 N -0.88 -24.45 13.22 55.48 0.73 -23.71 16 15 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 N -0.30 -7.74 11.03 30.81 0.34 -7.40 16 20 N -0.26 -6.09 12.00 32.60 0.39 -5.70 16 21 C 0.18 3.48 7.67 -153.64 -1.18 2.30 16 22 C 0.01 0.14 5.87 -104.97 -0.62 -0.48 16 23 C -0.09 -1.20 9.70 -39.17 -0.38 -1.58 16 24 C -0.12 -1.31 10.03 -39.64 -0.40 -1.71 16 25 C -0.12 -1.21 10.04 -39.48 -0.40 -1.60 16 26 C -0.12 -1.28 10.03 -39.64 -0.40 -1.67 16 27 C -0.11 -1.52 8.61 -39.17 -0.34 -1.86 16 28 C -0.06 -0.82 8.56 -39.42 -0.34 -1.16 16 29 C -0.20 -2.26 9.03 -39.46 -0.36 -2.62 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.39 7.66 -51.93 -0.40 0.00 16 34 H 0.06 0.45 7.66 -51.92 -0.40 0.05 16 35 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.13 1.91 7.96 -52.49 -0.42 1.49 16 39 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.13 1.72 4.90 -52.49 -0.26 1.46 16 43 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 44 H 0.14 1.18 6.29 -52.49 -0.33 0.85 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -32.75 392.00 -11.08 -43.82 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.10 Total: 1.79 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -5.64 Total: -20.25 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 1.30 Total: -45.60 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: -0.20 Total: -3.56 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -2.32 Total: 1.58 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.75 -11.08 -43.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003400033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.874 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds