Wall clock time and date at job start Tue Mar 31 2020 05:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00044 * 2 1 4 4 H 1.48507 * 109.46851 * 240.00046 * 3 2 1 5 5 H 1.48499 * 109.46699 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47251 * 119.99828 * 3 2 1 7 7 C 1.37882 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99726 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99872 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46900 * 180.02562 * 9 7 2 11 11 C 1.34117 * 125.15169 * 124.72275 * 10 9 7 12 12 C 1.38068 * 107.87721 * 179.84087 * 11 10 9 13 13 C 1.47121 * 126.81958 * 180.15982 * 12 11 10 14 14 O 1.21549 * 119.99846 * 180.30178 * 13 12 11 15 15 O 1.34794 * 120.00021 * 0.29820 * 13 12 11 16 16 C 1.35915 * 116.99601 * 175.09650 * 15 13 12 17 17 C 1.38737 * 120.05304 * 256.78628 * 16 15 13 18 18 C 1.38146 * 119.94022 * 179.74585 * 17 16 15 19 19 C 1.38265 * 120.05594 * 0.53339 * 18 17 16 20 20 C 1.38272 * 120.11329 * 359.72269 * 19 18 17 21 21 C 1.38144 * 120.05545 * 0.02562 * 20 19 18 22 22 C 1.46650 * 106.35379 * 0.40688 * 12 11 10 23 23 C 1.48273 * 126.51235 * 179.78522 * 22 12 11 24 24 C 1.39402 * 120.10191 * 324.70589 * 23 22 12 25 25 C 1.37957 * 119.89434 * 179.74651 * 24 23 22 26 26 C 1.38554 * 120.10451 * 0.55418 * 25 24 23 27 27 F 1.35099 * 119.90085 * 179.71808 * 26 25 24 28 28 C 1.38557 * 120.20175 * 359.69883 * 26 25 24 29 29 C 1.37965 * 120.09830 * 0.02562 * 28 26 25 30 30 N 1.31358 * 106.96874 * 359.75055 * 22 12 11 31 31 H 0.97002 * 120.00309 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47020 * 60.00408 * 9 7 2 33 33 H 1.08999 * 109.46873 * 299.99757 * 9 7 2 34 34 H 1.08000 * 126.06024 * 359.95395 * 11 10 9 35 35 H 1.07999 * 120.03134 * 0.02562 * 17 16 15 36 36 H 1.08001 * 119.97276 * 180.25574 * 18 17 16 37 37 H 1.08002 * 119.94494 * 179.69749 * 19 18 17 38 38 H 1.07996 * 119.96961 * 179.97438 * 20 19 18 39 39 H 1.07993 * 120.02990 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.04607 * 0.02562 * 24 23 22 41 41 H 1.08005 * 119.94567 * 180.27300 * 25 24 23 42 42 H 1.08003 * 119.95442 * 179.97438 * 28 26 25 43 43 H 1.07997 * 120.05003 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 2.2301 -4.6047 0.9049 12 6 3.2621 -5.4572 0.5666 13 6 3.6600 -6.6841 1.2742 14 8 4.5976 -7.3428 0.8685 15 8 2.9850 -7.0778 2.3725 16 6 3.3374 -8.2716 2.9184 17 6 2.5419 -9.3901 2.7158 18 6 2.9050 -10.6035 3.2674 19 6 4.0543 -10.7014 4.0298 20 6 4.8460 -9.5870 4.2376 21 6 4.4900 -8.3724 3.6839 22 6 3.8864 -4.8935 -0.6347 23 6 5.0442 -5.4534 -1.3727 24 6 6.0717 -6.0924 -0.6805 25 6 7.1444 -6.6163 -1.3719 26 6 7.2071 -6.4981 -2.7510 27 9 8.2622 -7.0077 -3.4234 28 6 6.1906 -5.8591 -3.4426 29 6 5.1112 -5.3371 -2.7602 30 7 3.2245 -3.7989 -0.9330 31 1 -0.4851 0.8400 -0.0004 32 1 0.6241 -2.5575 -0.8880 33 1 0.6247 -2.5563 0.8920 34 1 1.5618 -4.7176 1.7458 35 1 1.6419 -9.3132 2.1238 36 1 2.2883 -11.4754 3.1066 37 1 4.3339 -11.6499 4.4642 38 1 5.7430 -9.6660 4.8338 39 1 5.1085 -7.5022 3.8468 40 1 6.0258 -6.1811 0.3949 41 1 7.9388 -7.1155 -0.8369 42 1 6.2438 -5.7689 -4.5176 43 1 4.3192 -4.8396 -3.3001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003410527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:02 Heat of formation + Delta-G solvation = 8.395568 kcal Electronic energy + Delta-G solvation = -31111.934705 eV Core-core repulsion = 26617.755172 eV Total energy + Delta-G solvation = -4494.179533 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.117 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.83547 -41.25899 -40.48031 -38.67020 -38.47719 -36.48211 -33.97962 -32.37789 -31.18947 -31.13734 -30.89705 -30.01746 -29.65378 -27.23520 -24.41067 -23.81623 -22.99388 -22.92758 -22.43359 -21.58231 -20.36059 -19.52477 -18.08307 -17.78991 -17.28309 -16.72358 -16.55113 -16.41176 -16.03342 -15.98061 -15.51667 -15.24378 -14.77778 -14.66837 -14.31985 -14.27576 -13.83124 -13.75237 -13.65576 -13.48229 -13.09671 -12.92424 -12.68644 -12.38325 -12.34511 -11.97426 -11.89683 -11.81454 -11.76578 -11.22023 -11.04142 -10.94823 -10.71691 -10.46541 -10.38978 -10.23788 -9.99705 -9.31088 -9.18571 -8.95978 -8.86277 -8.78515 -8.48505 -7.96894 -6.40960 -4.47610 0.92807 0.97141 1.15211 1.41707 1.66741 2.53920 2.72745 3.11270 3.17374 3.21470 3.26723 3.30518 3.66072 3.86293 4.18405 4.33390 4.52893 4.69222 4.69809 4.76957 4.86627 4.94157 4.96113 4.98632 5.10473 5.16028 5.31278 5.40039 5.44080 5.50752 5.75607 5.75752 5.84994 5.99793 6.05428 6.12477 6.19977 6.20770 6.25578 6.29066 6.45284 6.49453 6.61241 6.73718 6.83392 6.88861 6.99015 7.36076 7.59719 7.63737 8.02467 8.12836 8.58804 9.19607 10.68022 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.006623 B = 0.003177 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4226.531913 B = 8809.928856 C =12257.389017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.067 3.933 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.248 3.752 10 N -0.306 5.306 11 C 0.133 3.867 12 C -0.306 4.306 13 C 0.547 3.453 14 O -0.502 6.502 15 O -0.297 6.297 16 C 0.095 3.905 17 C -0.120 4.120 18 C -0.108 4.108 19 C -0.123 4.123 20 C -0.107 4.107 21 C -0.119 4.119 22 C 0.147 3.853 23 C -0.024 4.024 24 C -0.033 4.033 25 C -0.162 4.162 26 C 0.101 3.899 27 F -0.144 7.144 28 C -0.165 4.165 29 C -0.059 4.059 30 N -0.255 5.255 31 H 0.270 0.730 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.188 0.812 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.148 0.852 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.013 -18.010 4.591 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.089 0.911 9 C 0.132 3.868 10 N -0.081 5.081 11 C -0.022 4.022 12 C -0.320 4.320 13 C 0.396 3.604 14 O -0.390 6.390 15 O -0.213 6.213 16 C 0.054 3.946 17 C -0.139 4.139 18 C -0.126 4.126 19 C -0.141 4.141 20 C -0.125 4.125 21 C -0.138 4.138 22 C -0.020 4.020 23 C -0.026 4.026 24 C -0.052 4.052 25 C -0.181 4.181 26 C 0.081 3.919 27 F -0.123 7.123 28 C -0.184 4.184 29 C -0.079 4.079 30 N -0.074 5.074 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.205 0.795 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.166 0.834 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.905 -16.914 3.627 18.625 hybrid contribution 0.462 0.185 0.557 0.747 sum 7.367 -16.729 4.184 18.752 Atomic orbital electron populations 1.69889 1.06080 1.28120 1.48834 1.24922 0.95002 0.99644 0.94154 0.86351 0.79410 0.81489 0.79127 1.19753 1.20912 1.19890 1.21133 0.94015 0.89018 1.53402 0.91098 1.20045 0.85561 0.81066 1.00132 1.49379 1.22733 1.19111 1.16895 1.23178 0.96838 0.87829 0.94396 1.19945 1.07353 1.00678 1.04012 1.20332 0.79493 0.83897 0.76701 1.90805 1.27792 1.55339 1.65077 1.84674 1.60434 1.34547 1.41671 1.18516 0.95389 0.84328 0.96354 1.21222 1.00678 0.91326 1.00656 1.21017 0.97113 0.96910 0.97553 1.21216 0.95133 0.98760 0.98949 1.21026 0.99751 0.92115 0.99607 1.21361 0.95819 0.98810 0.97800 1.21609 0.95177 0.92384 0.92878 1.17739 0.92464 1.00153 0.92224 1.21372 0.90310 0.92025 1.01512 1.20995 1.00744 1.04238 0.92097 1.17845 0.85460 0.98212 0.90394 1.91471 1.55120 1.85130 1.80597 1.20964 0.94493 1.02162 1.00734 1.21107 0.97322 0.96461 0.92964 1.77528 1.00692 1.15762 1.13457 0.92000 0.92770 0.91948 0.79501 0.85127 0.85333 0.85687 0.85432 0.85401 0.83443 0.84826 0.84703 0.84469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.75 13.29 55.43 0.74 -23.01 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.34 29.54 -169.99 -5.02 15.32 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.54 -13.82 9.21 -34.44 -0.32 -14.14 16 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.25 5.64 6.21 -5.19 -0.03 5.61 16 10 N -0.31 -6.23 3.62 -62.02 -0.22 -6.45 16 11 C 0.13 2.25 11.23 -16.62 -0.19 2.07 16 12 C -0.31 -5.26 6.26 -102.96 -0.64 -5.91 16 13 C 0.55 8.75 7.69 34.34 0.26 9.01 16 14 O -0.50 -8.44 11.99 -19.30 -0.23 -8.67 16 15 O -0.30 -4.31 9.87 -24.99 -0.25 -4.56 16 16 C 0.10 1.25 5.14 -39.21 -0.20 1.05 16 17 C -0.12 -1.36 9.99 -39.43 -0.39 -1.75 16 18 C -0.11 -0.99 10.04 -39.61 -0.40 -1.39 16 19 C -0.12 -1.06 10.04 -39.56 -0.40 -1.45 16 20 C -0.11 -1.01 10.04 -39.60 -0.40 -1.41 16 21 C -0.12 -1.40 9.58 -39.43 -0.38 -1.78 16 22 C 0.15 2.72 6.94 -80.55 -0.56 2.16 16 23 C -0.02 -0.39 5.73 -104.91 -0.60 -0.99 16 24 C -0.03 -0.50 7.77 -39.25 -0.30 -0.81 16 25 C -0.16 -2.22 10.01 -39.57 -0.40 -2.62 16 26 C 0.10 1.38 7.30 -39.35 -0.29 1.10 16 27 F -0.14 -1.96 17.26 2.25 0.04 -1.92 16 28 C -0.16 -2.19 10.01 -39.56 -0.40 -2.59 16 29 C -0.06 -0.88 9.76 -39.25 -0.38 -1.27 16 30 N -0.25 -5.30 12.27 34.58 0.42 -4.87 16 31 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.37 8.04 -51.93 -0.42 0.95 16 34 H 0.19 2.49 8.06 -52.49 -0.42 2.07 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.15 2.29 5.67 -52.49 -0.30 2.00 16 41 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 42 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 43 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -29.02 388.07 -9.27 -38.29 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.49 Total: 3.50 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -6.11 Total: -13.48 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.94 Total: -34.34 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.48 Total: -13.23 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.02 -9.27 -38.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003410527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.686 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds