Wall clock time and date at job start Tue Mar 31 2020 04:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99488 * 2 1 4 4 C 1.53006 * 109.46850 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47089 * 65.00182 * 4 3 2 6 6 C 1.36292 * 119.00991 * 270.01797 * 5 4 3 7 7 S 1.76193 * 118.27737 * 359.97433 * 6 5 4 8 8 C 1.76201 * 99.99947 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99940 * 359.97438 * 8 7 6 10 10 C 1.38733 * 119.99642 * 179.97438 * 8 7 6 11 11 N 1.31571 * 120.00621 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99844 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47132 * 59.99715 * 12 10 8 14 14 H 1.48502 * 109.47272 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46900 * 300.00029 * 12 10 8 16 16 N 1.31980 * 123.44660 * 179.97438 * 6 5 4 17 17 C 1.34785 * 118.00371 * 359.95441 * 16 6 5 18 18 S 1.74621 * 128.79387 * 180.02562 * 17 16 6 19 19 C 1.75809 * 92.36636 * 179.97438 * 18 17 16 20 20 C 1.33968 * 111.41152 * 0.03638 * 19 18 17 21 21 C 1.39867 * 121.53738 * 0.04845 * 17 16 6 22 22 C 1.35516 * 119.01245 * 89.99844 * 5 4 3 23 23 O 1.21888 * 122.19197 * 0.03113 * 22 5 4 24 24 C 1.52345 * 123.13184 * 180.02562 * 20 19 18 25 25 C 1.52932 * 108.95047 * 342.69567 * 24 20 19 26 26 C 1.53176 * 109.10081 * 50.94558 * 25 24 20 27 27 C 1.51791 * 124.23076 * 180.02562 * 19 18 17 28 28 H 1.08999 * 109.47365 * 59.99875 * 1 2 3 29 29 H 1.08999 * 109.46584 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47350 * 299.99650 * 1 2 3 31 31 H 1.08998 * 109.47361 * 60.00286 * 3 2 1 32 32 H 1.09002 * 109.47627 * 299.99799 * 3 2 1 33 33 H 1.09005 * 109.47258 * 305.00192 * 4 3 2 34 34 H 1.09001 * 109.47129 * 185.00175 * 4 3 2 35 35 H 0.96989 * 120.00130 * 180.02562 * 11 10 8 36 36 H 1.09004 * 109.54977 * 222.85923 * 24 20 19 37 37 H 1.09006 * 109.56473 * 102.54209 * 24 20 19 38 38 H 1.08994 * 109.52831 * 291.06046 * 25 24 20 39 39 H 1.09001 * 109.58838 * 170.86671 * 25 24 20 40 40 H 1.09001 * 109.57165 * 169.68691 * 26 25 24 41 41 H 1.09009 * 109.67365 * 49.38000 * 26 25 24 42 42 H 1.08996 * 109.57402 * 283.18148 * 27 19 18 43 43 H 1.09004 * 109.56721 * 43.54380 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 4.0888 -0.7922 -1.3142 7 16 3.6971 -1.7286 0.1259 8 6 3.9996 -3.3568 -0.4761 9 1 4.3313 -3.5034 -1.4934 10 6 3.8116 -4.4503 0.3567 11 7 3.4069 -4.2717 1.5958 12 14 4.1315 -6.1764 -0.2817 13 1 5.5487 -6.2910 -0.7100 14 1 3.8581 -7.1613 0.7956 15 1 3.2413 -6.4492 -1.4386 16 7 4.4765 -1.4416 -2.3959 17 6 4.7738 -0.7199 -3.4948 18 16 5.3077 -1.2801 -5.0602 19 6 5.3947 0.3563 -5.6970 20 6 5.0405 1.2600 -4.7736 21 6 4.6795 0.6756 -3.5011 22 6 4.2577 1.3572 -2.3152 23 8 4.1579 2.5709 -2.2644 24 6 5.0199 2.7596 -5.0411 25 6 5.8464 3.0520 -6.2942 26 6 5.3808 2.1326 -7.4275 27 6 5.8178 0.6998 -7.1137 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 3.8515 0.5683 0.8409 34 1 3.9784 2.1766 0.0890 35 1 3.2759 -5.0363 2.1781 36 1 5.4489 3.2879 -4.1896 37 1 3.9924 3.0886 -5.1966 38 1 6.9006 2.8691 -6.0863 39 1 5.7080 4.0923 -6.5887 40 1 5.8308 2.4542 -8.3667 41 1 4.2946 2.1733 -7.5102 42 1 6.9015 0.6212 -7.2004 43 1 5.3429 0.0120 -7.8135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003531926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:46 Heat of formation + Delta-G solvation = -46.525704 kcal Electronic energy + Delta-G solvation = -28853.679901 eV Core-core repulsion = 24922.942836 eV Total energy + Delta-G solvation = -3930.737066 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 366.086 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83371 -38.33645 -37.48329 -36.87164 -34.94149 -32.96336 -32.64480 -30.57045 -29.83915 -28.35682 -26.22976 -25.91636 -24.60165 -24.28531 -22.81645 -22.02134 -21.43577 -19.05421 -18.26495 -17.48668 -17.16312 -16.69041 -16.20213 -16.08212 -15.70333 -15.14808 -15.13010 -14.53657 -14.49094 -14.35646 -14.15072 -13.71596 -13.24744 -13.10077 -12.83857 -12.71886 -12.58003 -12.47707 -12.44137 -12.07214 -11.83077 -11.55019 -11.30649 -11.26491 -11.20785 -11.00552 -10.83894 -10.78019 -10.63704 -10.38704 -10.09494 -9.55899 -9.48131 -9.42956 -9.28746 -9.23070 -8.95144 -8.05568 -7.78968 -6.79567 -6.70303 -4.41093 0.88909 1.74330 2.18175 2.36591 2.43895 2.62622 3.11274 3.11763 3.12876 3.17177 3.81315 3.97854 4.12404 4.72173 4.77528 4.81190 4.93518 4.94717 4.98195 5.14102 5.21256 5.29679 5.37241 5.42914 5.52620 5.57934 5.58937 5.63330 5.65232 5.74255 5.76463 5.86931 5.89086 5.97086 5.99524 6.03949 6.15954 6.22185 6.37591 6.47430 6.62400 6.90381 7.13334 7.37407 7.39076 8.21977 8.31471 8.34924 8.82996 10.35421 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.010317 B = 0.004001 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.389428 B = 6997.097215 C = 9087.402593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.045 3.955 4 C 0.091 3.909 5 N -0.522 5.522 6 C 0.320 3.680 7 S 0.251 5.749 8 C -0.551 4.551 9 H 0.116 0.884 10 C 0.081 3.919 11 N -0.866 5.866 12 Si 0.933 3.067 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.267 1.267 16 N -0.503 5.503 17 C 0.132 3.868 18 S 0.141 5.859 19 C -0.243 4.243 20 C -0.008 4.008 21 C -0.309 4.309 22 C 0.578 3.422 23 O -0.545 6.545 24 C -0.054 4.054 25 C -0.119 4.119 26 C -0.114 4.114 27 C -0.034 4.034 28 H 0.033 0.967 29 H 0.087 0.913 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.279 0.721 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 9.903 -7.667 12.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C -0.033 4.033 4 C -0.033 4.033 5 N -0.245 5.245 6 C -0.045 4.045 7 S 0.498 5.502 8 C -0.700 4.700 9 H 0.134 0.866 10 C -0.130 4.130 11 N -0.499 5.499 12 Si 0.757 3.243 13 H -0.192 1.192 14 H -0.206 1.206 15 H -0.192 1.192 16 N -0.234 5.234 17 C -0.114 4.114 18 S 0.403 5.597 19 C -0.360 4.360 20 C -0.020 4.020 21 C -0.330 4.330 22 C 0.374 3.626 23 O -0.426 6.426 24 C -0.093 4.093 25 C -0.157 4.157 26 C -0.153 4.153 27 C -0.073 4.073 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.263 8.321 -6.845 10.778 hybrid contribution -0.107 0.806 -0.804 1.144 sum -0.371 9.128 -7.650 11.915 Atomic orbital electron populations 1.22710 0.81876 1.02879 0.99020 1.88318 1.19080 1.25496 1.95205 1.22886 0.92904 0.86603 1.00937 1.22012 0.94086 1.01085 0.86090 1.46205 1.58400 1.06084 1.13809 1.26545 0.92584 0.83372 1.01957 1.83698 1.66604 0.99604 1.00291 1.23797 1.51910 0.90134 1.04134 0.86581 1.25179 0.92959 1.00629 0.94279 1.69903 1.41031 1.33200 1.05720 0.85962 0.79766 0.79811 0.78723 1.19164 1.20611 1.19177 1.70411 1.26772 1.29397 0.96869 1.23924 0.96067 0.92709 0.98724 1.83595 1.69124 1.06253 1.00775 1.24120 1.16457 0.95034 1.00357 1.19757 0.96789 0.95572 0.89841 1.20210 1.23170 0.92595 0.96996 1.16757 0.77201 0.86257 0.82337 1.90783 1.56362 1.12035 1.83399 1.20516 1.00515 0.90416 0.97846 1.21578 1.00089 0.98992 0.95031 1.21552 1.01421 0.94299 0.98031 1.20157 1.00474 0.96707 0.89971 0.94883 0.89425 0.94418 0.91691 0.92964 0.87681 0.86977 0.91080 0.89918 0.90841 0.91775 0.91708 0.91590 0.91626 0.91025 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.56 16 2 O -0.36 -6.23 8.19 -35.23 -0.29 -6.52 16 3 C 0.05 0.67 6.28 37.16 0.23 0.90 16 4 C 0.09 1.46 5.45 -4.04 -0.02 1.44 16 5 N -0.52 -10.37 2.60 -118.49 -0.31 -10.68 16 6 C 0.32 7.09 7.42 -87.98 -0.65 6.44 16 7 S 0.25 5.73 17.32 -107.50 -1.86 3.86 16 8 C -0.55 -14.20 9.22 30.92 0.29 -13.91 16 9 H 0.12 3.08 6.46 -52.49 -0.34 2.74 16 10 C 0.08 2.03 5.49 -17.48 -0.10 1.93 16 11 N -0.87 -22.26 13.22 55.49 0.73 -21.52 16 12 Si 0.93 19.84 29.55 -169.99 -5.02 14.82 16 13 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 14 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 15 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 16 N -0.50 -11.72 8.61 -11.45 -0.10 -11.82 16 17 C 0.13 2.82 7.49 -15.65 -0.12 2.70 16 18 S 0.14 2.47 23.16 -107.50 -2.49 -0.02 16 19 C -0.24 -3.87 6.30 -35.27 -0.22 -4.09 16 20 C -0.01 -0.15 5.93 -102.80 -0.61 -0.76 16 21 C -0.31 -6.36 6.01 -104.88 -0.63 -6.99 16 22 C 0.58 11.94 7.59 -14.02 -0.11 11.83 16 23 O -0.55 -11.30 15.11 5.02 0.08 -11.23 16 24 C -0.05 -0.80 5.33 -27.10 -0.14 -0.95 16 25 C -0.12 -1.37 5.90 -26.67 -0.16 -1.53 16 26 C -0.11 -1.20 5.94 -26.62 -0.16 -1.36 16 27 C -0.03 -0.40 6.23 -27.32 -0.17 -0.57 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.11 1.65 6.37 -51.92 -0.33 1.32 16 34 H 0.11 1.60 7.45 -51.93 -0.39 1.22 16 35 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.08 1.33 7.28 -51.93 -0.38 0.96 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.71 8.11 -51.92 -0.42 0.29 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 374.17 15.07 5.64 5.64 Total: -1.00 -29.58 374.17 -10.72 -40.30 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.64 Total: 0.52 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.46 Total: -3.36 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.33 Total: -44.02 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.21 Total: -17.75 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 8.20 SS G_CDS: -4.35 Total: 3.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.58 -10.72 -40.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003531926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.229 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds