Wall clock time and date at job start Tue Mar 31 2020 05:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.45202 * 109.47355 * 57.63113 * 3 2 1 5 5 C 1.34743 * 116.99891 * 179.97438 * 4 3 2 6 6 O 1.21504 * 120.00107 * 359.97438 * 5 4 3 7 7 C 1.47474 * 120.00130 * 180.02562 * 5 4 3 8 8 C 1.39796 * 120.09317 * 180.02562 * 7 5 4 9 9 C 1.37672 * 119.90734 * 180.02562 * 8 7 5 10 10 C 1.39034 * 120.09251 * 359.97438 * 9 8 7 11 11 O 1.35698 * 119.90658 * 180.02562 * 10 9 8 12 12 C 1.35694 * 117.99385 * 186.12052 * 11 10 9 13 13 C 1.39042 * 119.90590 * 67.67474 * 12 11 10 14 14 C 1.37672 * 120.09214 * 180.29484 * 13 12 11 15 15 C 1.39831 * 119.90230 * 359.45170 * 14 13 12 16 16 C 1.47416 * 120.08838 * 180.29835 * 15 14 13 17 17 O 1.21537 * 120.00672 * 0.02562 * 16 15 14 18 18 O 1.34774 * 119.99711 * 179.97438 * 16 15 14 19 19 C 1.34858 * 117.00015 * 179.97438 * 18 16 15 20 20 H 1.08007 * 120.00144 * 0.02562 * 19 18 16 21 21 C 1.38804 * 120.00136 * 180.02562 * 19 18 16 22 22 N 1.31421 * 119.99585 * 180.02562 * 21 19 18 23 23 Si 1.86790 * 119.99820 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47033 * 89.99940 * 23 21 19 25 25 H 1.48504 * 109.47157 * 210.00266 * 23 21 19 26 26 H 1.48503 * 109.47514 * 330.00193 * 23 21 19 27 27 C 1.39821 * 119.81638 * 0.27267 * 15 14 13 28 28 C 1.37674 * 119.90499 * 359.97438 * 27 15 14 29 29 C 1.39025 * 120.18146 * 0.27244 * 10 9 8 30 30 C 1.37683 * 120.09306 * 359.44895 * 29 10 9 31 31 H 1.09001 * 109.47211 * 297.62376 * 3 2 1 32 32 H 1.09003 * 109.47021 * 177.62968 * 3 2 1 33 33 H 1.07998 * 120.04344 * 359.97438 * 8 7 5 34 34 H 1.08000 * 119.95557 * 179.97438 * 9 8 7 35 35 H 1.07995 * 119.95391 * 0.04315 * 13 12 11 36 36 H 1.07996 * 120.04567 * 179.72468 * 14 13 12 37 37 H 0.97006 * 119.99261 * 179.97438 * 22 21 19 38 38 H 1.07995 * 120.04870 * 180.02562 * 27 15 14 39 39 H 1.07994 * 119.95659 * 180.02562 * 28 27 15 40 40 H 1.08006 * 119.95672 * 179.73345 * 29 10 9 41 41 H 1.07999 * 120.04633 * 180.27528 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 8 3.0923 -0.7320 -1.1562 5 6 4.4282 -0.8254 -1.3056 6 8 5.1681 -0.3084 -0.4922 7 6 4.9923 -1.5542 -2.4569 8 6 6.3780 -1.6528 -2.6134 9 6 6.9005 -2.3336 -3.6899 10 6 6.0521 -2.9231 -4.6204 11 8 6.5712 -3.5937 -5.6797 12 6 5.7140 -4.0446 -6.6301 13 6 5.0335 -3.1387 -7.4360 14 6 4.1584 -3.5918 -8.3974 15 6 3.9631 -4.9655 -8.5704 16 6 3.0320 -5.4554 -9.6030 17 8 2.4331 -4.6649 -10.3057 18 8 2.8455 -6.7798 -9.7685 19 6 1.9800 -7.1608 -10.7300 20 1 1.4731 -6.4164 -11.3262 21 6 1.7406 -8.5097 -10.9535 22 7 0.8975 -8.8809 -11.8908 23 14 2.6178 -9.7971 -9.9230 24 1 1.8041 -10.1067 -8.7199 25 1 2.8032 -11.0322 -10.7265 26 1 3.9436 -9.2761 -9.5031 27 6 4.6538 -5.8732 -7.7617 28 6 5.5232 -5.4115 -6.7993 29 6 4.6735 -2.8231 -4.4712 30 6 4.1428 -2.1489 -3.3944 31 1 2.9715 -0.4757 0.9105 32 1 2.9708 1.0276 -0.0425 33 1 7.0376 -1.1948 -1.8913 34 1 7.9708 -2.4099 -3.8118 35 1 5.1886 -2.0780 -7.3049 36 1 3.6269 -2.8873 -9.0199 37 1 0.7306 -9.8235 -12.0472 38 1 4.5061 -6.9350 -7.8924 39 1 6.0574 -6.1118 -6.1745 40 1 4.0178 -3.2787 -5.1985 41 1 3.0717 -2.0754 -3.2768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003536490.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:10 Heat of formation + Delta-G solvation = -94.581329 kcal Electronic energy + Delta-G solvation = -29930.171361 eV Core-core repulsion = 25321.434963 eV Total energy + Delta-G solvation = -4608.736398 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.098 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.49689 -40.97557 -39.59899 -38.66926 -37.67400 -37.23663 -36.60090 -35.42354 -32.51128 -31.97394 -31.43465 -31.09081 -30.40292 -29.34681 -26.05518 -24.91738 -23.64850 -23.02745 -22.71305 -21.51365 -20.32384 -19.24728 -19.04523 -18.50581 -18.15829 -17.60141 -17.27597 -17.15740 -16.53065 -16.17664 -15.52328 -15.17020 -14.92675 -14.89768 -14.78876 -14.49957 -14.37244 -14.12404 -13.98182 -13.82736 -13.58934 -13.57947 -13.17651 -13.04372 -12.92515 -12.73958 -12.58591 -12.45924 -12.24506 -12.04990 -11.52026 -11.42330 -11.32340 -11.15640 -11.03513 -10.64117 -10.52103 -9.85594 -9.61182 -9.39555 -9.17852 -9.08335 -8.83382 -8.60809 -6.54016 -4.24311 0.17817 0.61684 0.83123 1.24178 1.29284 1.97570 2.09281 2.57258 2.63150 3.05731 3.14069 3.20285 3.23780 3.24793 3.26585 3.91927 3.97630 4.10778 4.12763 4.27122 4.38466 4.42347 4.48842 4.63185 4.73507 4.74789 4.87314 4.99278 5.00142 5.23581 5.29429 5.41022 5.49444 5.53603 5.64632 5.75488 5.76340 5.82827 5.89507 6.13580 6.16248 6.28669 6.53218 6.58380 6.79617 7.11812 7.17290 7.56357 7.87463 8.47083 8.82831 9.50231 10.53330 Molecular weight = 367.10amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.001845 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.837309 B =15172.818636 C =16487.336849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C 0.205 3.795 3 C 0.170 3.830 4 O -0.349 6.349 5 C 0.525 3.475 6 O -0.503 6.503 7 C -0.171 4.171 8 C -0.012 4.012 9 C -0.160 4.160 10 C 0.169 3.831 11 O -0.247 6.247 12 C 0.081 3.919 13 C -0.145 4.145 14 C -0.054 4.054 15 C -0.080 4.080 16 C 0.438 3.562 17 O -0.535 6.535 18 O -0.239 6.239 19 C -0.372 4.372 20 H 0.113 0.887 21 C 0.065 3.935 22 N -0.862 5.862 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.258 1.258 27 C -0.063 4.063 28 C -0.125 4.125 29 C -0.209 4.209 30 C -0.017 4.017 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.145 0.855 37 H 0.283 0.717 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.934 14.117 22.976 29.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.114 4.114 3 C 0.093 3.907 4 O -0.265 6.265 5 C 0.371 3.629 6 O -0.392 6.392 7 C -0.173 4.173 8 C -0.030 4.030 9 C -0.179 4.179 10 C 0.124 3.876 11 O -0.158 6.158 12 C 0.039 3.961 13 C -0.163 4.163 14 C -0.072 4.072 15 C -0.081 4.081 16 C 0.286 3.714 17 O -0.431 6.431 18 O -0.147 6.147 19 C -0.447 4.447 20 H 0.130 0.870 21 C -0.140 4.140 22 N -0.500 5.500 23 Si 0.730 3.270 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.182 1.182 27 C -0.082 4.082 28 C -0.143 4.143 29 C -0.227 4.227 30 C -0.035 4.035 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.153 0.847 36 H 0.163 0.837 37 H 0.093 0.907 38 H 0.165 0.835 39 H 0.155 0.845 40 H 0.162 0.838 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 11.391 14.229 22.888 29.259 hybrid contribution 0.496 -0.630 0.233 0.835 sum 11.887 13.599 23.121 29.340 Atomic orbital electron populations 1.81307 1.12325 1.07266 1.05861 1.28306 0.94160 0.94169 0.94758 1.19926 0.81617 0.99775 0.89403 1.86571 1.25170 1.69169 1.45563 1.21006 0.79389 0.77456 0.85015 1.90877 1.59889 1.45042 1.43364 1.18874 0.93971 1.07701 0.96749 1.21021 0.93047 0.93413 0.95547 1.20380 1.00488 1.02113 0.94877 1.19619 0.92152 0.89514 0.86298 1.84331 1.34467 1.67611 1.29343 1.18845 0.94291 0.92465 0.90505 1.21286 0.98010 0.99937 0.97086 1.21134 0.95590 0.94531 0.95978 1.19552 0.98100 0.93734 0.96716 1.20324 0.84026 0.82070 0.85010 1.90694 1.49110 1.56326 1.47003 1.83523 1.56207 1.23449 1.51543 1.20748 1.18864 0.94058 1.11040 0.86974 1.24611 0.96052 0.96973 0.96373 1.69593 1.32424 1.18209 1.29770 0.86210 0.80896 0.79851 0.80005 1.19602 1.20498 1.18215 1.21469 0.93087 1.01032 0.92576 1.21060 0.99254 0.93593 1.00412 1.21470 0.94097 1.05552 1.01625 1.21297 1.00491 0.91016 0.90721 0.86157 0.86151 0.83482 0.83719 0.84688 0.83736 0.90681 0.83536 0.84458 0.83837 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -3.86 18.54 42.15 0.78 -3.08 16 2 C 0.21 1.35 15.83 -20.76 -0.33 1.02 16 3 C 0.17 0.63 5.95 34.37 0.20 0.83 16 4 O -0.35 -2.22 9.42 -40.61 -0.38 -2.60 16 5 C 0.53 3.92 7.89 34.49 0.27 4.20 16 6 O -0.50 -4.45 16.13 -19.27 -0.31 -4.76 16 7 C -0.17 -1.30 5.87 -104.97 -0.62 -1.92 16 8 C -0.01 -0.08 9.58 -39.21 -0.38 -0.46 16 9 C -0.16 -1.17 9.97 -39.49 -0.39 -1.56 16 10 C 0.17 1.54 6.55 -38.99 -0.26 1.28 16 11 O -0.25 -2.61 9.97 -2.35 -0.02 -2.64 16 12 C 0.08 0.94 4.71 -38.99 -0.18 0.75 16 13 C -0.14 -1.68 8.32 -39.49 -0.33 -2.00 16 14 C -0.05 -0.77 9.59 -39.19 -0.38 -1.15 16 15 C -0.08 -1.37 5.87 -104.97 -0.62 -1.99 16 16 C 0.44 10.05 7.83 34.47 0.27 10.32 16 17 O -0.53 -13.81 15.59 -19.30 -0.30 -14.11 16 18 O -0.24 -6.02 7.81 -21.77 -0.17 -6.19 16 19 C -0.37 -10.62 10.11 30.94 0.31 -10.31 16 20 H 0.11 3.54 7.09 -52.48 -0.37 3.17 16 21 C 0.07 1.79 5.49 -17.52 -0.10 1.69 16 22 N -0.86 -24.51 13.96 55.49 0.77 -23.74 16 23 Si 0.91 20.21 28.62 -169.99 -4.86 15.35 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 27 C -0.06 -0.93 9.61 -39.20 -0.38 -1.30 16 28 C -0.12 -1.49 9.97 -39.49 -0.39 -1.89 16 29 C -0.21 -1.86 8.77 -39.49 -0.35 -2.20 16 30 C -0.02 -0.13 9.61 -39.20 -0.38 -0.51 16 31 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.15 0.81 7.64 -52.49 -0.40 0.41 16 34 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.14 2.06 7.64 -52.49 -0.40 1.66 16 37 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.15 2.17 7.60 -52.49 -0.40 1.77 16 39 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.14 1.36 6.17 -52.48 -0.32 1.04 16 41 H 0.14 0.95 7.60 -52.49 -0.40 0.55 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -33.90 385.38 -6.24 -40.13 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -3.54 Total: 1.02 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -4.01 Total: -5.19 kcal Atomic # 7 Polarization: -28.37 SS G_CDS: 1.56 Total: -26.82 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -1.19 Total: -30.30 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.86 Total: 15.35 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.90 -6.24 -40.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003536490.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.448 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds