Wall clock time and date at job start Tue Mar 31 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38282 * 119.97350 * 2 1 4 4 C 1.38252 * 120.11359 * 180.02562 * 3 2 1 5 5 C 1.38162 * 120.04949 * 359.68325 * 4 3 2 6 6 C 1.38710 * 119.94653 * 0.57438 * 5 4 3 7 7 O 1.35902 * 120.05529 * 179.72372 * 6 5 4 8 8 C 1.42899 * 117.00251 * 359.72255 * 7 6 5 9 9 C 1.50694 * 109.47407 * 180.02562 * 8 7 6 10 10 N 1.30507 * 126.33050 * 89.97676 * 9 8 7 11 11 N 1.28515 * 110.13327 * 180.02562 * 10 9 8 12 12 C 1.31429 * 109.85560 * 359.97438 * 11 10 9 13 13 S 1.76204 * 126.50885 * 179.97438 * 12 11 10 14 14 C 1.76198 * 99.99829 * 0.02584 * 13 12 11 15 15 H 1.07999 * 120.00293 * 359.97438 * 14 13 12 16 16 C 1.38675 * 119.99774 * 179.97438 * 14 13 12 17 17 N 1.31634 * 119.99918 * 359.72931 * 16 14 13 18 18 Si 1.86795 * 120.00044 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46967 * 90.00530 * 18 16 14 20 20 H 1.48504 * 109.47539 * 210.00110 * 18 16 14 21 21 H 1.48498 * 109.47513 * 330.00616 * 18 16 14 22 22 N 1.36704 * 126.32679 * 270.24075 * 9 8 7 23 23 C 1.40205 * 127.15663 * 0.02562 * 22 9 8 24 24 C 1.38828 * 120.07102 * 64.89646 * 23 22 9 25 25 C 1.38121 * 119.93684 * 179.74476 * 24 23 22 26 26 C 1.38287 * 120.06271 * 0.53148 * 25 24 23 27 27 C 1.38274 * 120.12948 * 359.72234 * 26 25 24 28 28 C 1.38123 * 120.07189 * 0.02562 * 27 26 25 29 29 C 1.38126 * 119.97176 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47063 * 270.01886 * 1 2 3 31 31 H 1.08999 * 109.47067 * 30.01993 * 1 2 3 32 32 H 1.09001 * 109.47335 * 150.01618 * 1 2 3 33 33 H 1.08005 * 119.94633 * 0.02562 * 3 2 1 34 34 H 1.07995 * 119.97163 * 179.97438 * 4 3 2 35 35 H 1.08000 * 120.02539 * 180.29581 * 5 4 3 36 36 H 1.08998 * 109.47495 * 60.00035 * 8 7 6 37 37 H 1.09004 * 109.47205 * 300.00122 * 8 7 6 38 38 H 0.97000 * 120.00211 * 180.02562 * 17 16 14 39 39 H 1.07998 * 120.02859 * 359.97438 * 24 23 22 40 40 H 1.08000 * 119.96814 * 180.23076 * 25 24 23 41 41 H 1.07995 * 119.93350 * 179.74372 * 26 25 24 42 42 H 1.08003 * 119.96589 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.03419 * 180.02562 * 28 27 26 44 44 H 1.07999 * 120.02407 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5804 1.2013 -0.0005 5 6 4.2751 0.0070 0.0055 6 6 3.5845 -1.1959 0.0001 7 8 4.2657 -2.3718 0.0004 8 6 5.6926 -2.2951 0.0003 9 6 6.2706 -3.6867 0.0000 10 7 6.5667 -4.4008 -1.0515 11 7 7.0397 -5.5407 -0.6933 12 6 7.0727 -5.6181 0.6183 13 16 7.6398 -6.9856 1.5739 14 6 8.0982 -8.0925 0.2819 15 1 7.9756 -7.7984 -0.7501 16 6 8.6165 -9.3412 0.5900 17 7 8.7710 -9.6976 1.8478 18 14 9.1019 -10.5150 -0.7796 19 1 10.5238 -10.2897 -1.1439 20 1 8.9253 -11.9152 -0.3175 21 1 8.2427 -10.2733 -1.9664 22 7 6.5771 -4.4366 1.1012 23 6 6.4186 -4.0710 2.4455 24 6 5.1485 -3.8558 2.9628 25 6 4.9953 -3.5009 4.2888 26 6 6.1063 -3.3493 5.0981 27 6 7.3730 -3.5578 4.5843 28 6 7.5322 -3.9179 3.2604 29 6 2.1970 -1.1965 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5136 33 1 1.6565 2.1325 0.0004 34 1 4.1176 2.1381 -0.0010 35 1 5.3551 0.0102 0.0099 36 1 6.0279 -1.7622 0.8900 37 1 6.0278 -1.7627 -0.8899 38 1 9.1339 -10.5710 2.0634 39 1 4.2807 -3.9694 2.3299 40 1 4.0072 -3.3370 4.6927 41 1 5.9843 -3.0677 6.1336 42 1 8.2388 -3.4382 5.2187 43 1 8.5218 -4.0811 2.8598 44 1 1.6570 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004124924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:29 Heat of formation + Delta-G solvation = 90.471529 kcal Electronic energy + Delta-G solvation = -29203.441304 eV Core-core repulsion = 25213.608116 eV Total energy + Delta-G solvation = -3989.833188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.39171 -40.26583 -39.12348 -37.82926 -34.47669 -32.74077 -32.70229 -31.74423 -31.03072 -29.94041 -29.53628 -27.43495 -26.71548 -25.59383 -23.55234 -22.86862 -22.71025 -21.67509 -21.59101 -20.28633 -18.55178 -18.04201 -17.43071 -16.49026 -16.24283 -16.15857 -15.96404 -15.74267 -15.21536 -14.96881 -14.59621 -14.42996 -14.28069 -14.12899 -13.89847 -13.51406 -13.43689 -13.11782 -12.90648 -12.58563 -12.39736 -12.30920 -11.94608 -11.76805 -11.42208 -11.38239 -11.19017 -11.16842 -11.10131 -11.04262 -10.74565 -10.30250 -10.17208 -9.96128 -9.72421 -9.06522 -8.99534 -8.96785 -8.89524 -8.75340 -8.35230 -6.86816 -6.51001 -4.26044 1.01995 1.11179 1.27057 1.28646 1.94170 2.34872 2.97972 3.17262 3.21380 3.24130 3.31620 3.55620 3.61067 3.65169 3.98598 4.40276 4.57766 4.67565 4.75833 4.83170 4.85101 4.85557 4.93208 4.97702 5.01270 5.03553 5.09064 5.12966 5.29816 5.30284 5.33541 5.41929 5.49235 5.61366 5.66579 5.86472 5.89500 5.98573 6.09249 6.13080 6.22728 6.26316 6.37352 6.37881 6.40519 6.57235 6.57990 6.72052 7.25249 7.41443 7.53324 8.33173 9.00850 9.28257 10.56956 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.012142 B = 0.002592 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.433196 B =10799.901755 C =12157.513429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.048 4.048 3 C -0.163 4.163 4 C -0.075 4.075 5 C -0.216 4.216 6 C 0.142 3.858 7 O -0.307 6.307 8 C 0.166 3.834 9 C 0.131 3.869 10 N -0.255 5.255 11 N -0.304 5.304 12 C 0.184 3.816 13 S 0.156 5.844 14 C -0.538 4.538 15 H 0.106 0.894 16 C 0.077 3.923 17 N -0.876 5.876 18 Si 0.933 3.067 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.265 1.265 22 N -0.431 5.431 23 C 0.123 3.877 24 C -0.100 4.100 25 C -0.110 4.110 26 C -0.111 4.111 27 C -0.107 4.107 28 C -0.097 4.097 29 C -0.153 4.153 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.275 0.725 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.618 20.983 5.734 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.049 4.049 3 C -0.181 4.181 4 C -0.093 4.093 5 C -0.235 4.235 6 C 0.096 3.904 7 O -0.220 6.220 8 C 0.088 3.912 9 C -0.137 4.137 10 N -0.097 5.097 11 N -0.150 5.150 12 C -0.184 4.184 13 S 0.389 5.611 14 C -0.687 4.687 15 H 0.124 0.876 16 C -0.133 4.133 17 N -0.511 5.511 18 Si 0.758 3.242 19 H -0.199 1.199 20 H -0.206 1.206 21 H -0.189 1.189 22 N -0.126 5.126 23 C 0.031 3.969 24 C -0.120 4.120 25 C -0.129 4.129 26 C -0.129 4.129 27 C -0.126 4.126 28 C -0.117 4.117 29 C -0.172 4.172 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.377 20.016 5.541 23.217 hybrid contribution 0.327 -0.164 -0.750 0.834 sum -10.050 19.852 4.792 22.761 Atomic orbital electron populations 1.20811 0.90799 1.02997 1.02542 1.19691 0.96005 0.92233 0.96927 1.20913 0.94153 0.97450 1.05631 1.20904 0.94143 0.97321 0.96963 1.21269 1.00373 0.92270 1.09558 1.18985 0.91727 0.84539 0.95124 1.86171 1.19406 1.28213 1.88182 1.20509 0.78258 0.89355 1.03033 1.23862 1.09427 0.97229 0.83148 1.73890 1.11989 0.99891 1.23945 1.74834 1.21489 1.11275 1.07357 1.28705 1.00990 0.92915 0.95805 1.83645 1.70577 1.00078 1.06810 1.23262 1.48896 1.01157 0.95339 0.87609 1.25078 0.93977 0.97154 0.97042 1.69945 1.42187 1.21887 1.17100 0.85912 0.79252 0.78368 0.80680 1.19862 1.20622 1.18933 1.43638 1.50864 1.13238 1.04831 1.17581 0.94282 1.02953 0.82049 1.21236 0.95815 0.98886 0.96029 1.21020 0.99243 0.99800 0.92822 1.21268 0.92496 0.99229 0.99940 1.21048 0.97834 0.99308 0.94392 1.21264 0.98317 0.97954 0.94115 1.20311 0.90876 0.98720 1.07276 0.90901 0.91341 0.91270 0.86086 0.85818 0.85459 0.90532 0.88747 0.91539 0.85226 0.85266 0.85467 0.84995 0.84911 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.05 -0.46 5.88 -104.65 -0.62 -1.08 16 3 C -0.16 -1.45 9.70 -39.56 -0.38 -1.83 16 4 C -0.08 -0.69 10.04 -39.60 -0.40 -1.08 16 5 C -0.22 -2.31 9.04 -39.44 -0.36 -2.66 16 6 C 0.14 1.79 6.69 -39.22 -0.26 1.53 16 7 O -0.31 -4.58 10.12 -19.43 -0.20 -4.78 16 8 C 0.17 2.38 5.06 36.00 0.18 2.57 16 9 C 0.13 2.54 7.63 -153.88 -1.17 1.36 16 10 N -0.26 -5.84 12.18 33.02 0.40 -5.44 16 11 N -0.30 -7.75 11.04 30.78 0.34 -7.41 16 12 C 0.18 4.39 8.00 -87.85 -0.70 3.68 16 13 S 0.16 3.93 21.59 -107.50 -2.32 1.61 16 14 C -0.54 -15.10 9.37 30.89 0.29 -14.81 16 15 H 0.11 3.07 6.93 -52.49 -0.36 2.70 16 16 C 0.08 2.09 5.49 -17.47 -0.10 2.00 16 17 N -0.88 -24.36 13.22 55.48 0.73 -23.63 16 18 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 N -0.43 -8.55 2.84 -57.59 -0.16 -8.72 16 23 C 0.12 2.02 5.19 -83.59 -0.43 1.59 16 24 C -0.10 -1.43 9.90 -39.41 -0.39 -1.82 16 25 C -0.11 -1.25 10.04 -39.61 -0.40 -1.64 16 26 C -0.11 -1.15 10.04 -39.55 -0.40 -1.54 16 27 C -0.11 -1.23 10.04 -39.61 -0.40 -1.63 16 28 C -0.10 -1.42 9.93 -39.40 -0.39 -1.81 16 29 C -0.15 -1.76 9.64 -39.44 -0.38 -2.14 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 32 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 1.19 6.30 -52.49 -0.33 0.85 16 36 H 0.08 0.94 7.46 -51.93 -0.39 0.55 16 37 H 0.09 1.20 7.67 -51.93 -0.40 0.80 16 38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 43 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 44 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 399.00 15.07 6.01 6.01 Total: -1.00 -33.05 399.00 -11.42 -44.47 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.26 Total: 1.37 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -5.94 Total: -19.76 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 1.31 Total: -45.19 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.20 Total: -4.78 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -2.32 Total: 1.61 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.05 -11.42 -44.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004124924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.939 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds