Wall clock time and date at job start Tue Mar 31 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38164 * 120.02804 * 2 1 4 4 C 1.38239 * 120.05840 * 180.29605 * 3 2 1 5 5 C 1.38288 * 120.11042 * 359.67875 * 4 3 2 6 6 C 1.38125 * 120.05327 * 0.02562 * 5 4 3 7 7 C 1.38709 * 120.02815 * 179.68127 * 2 1 3 8 8 O 1.35899 * 120.05856 * 359.97438 * 7 2 1 9 9 C 1.42899 * 117.00487 * 179.73038 * 8 7 2 10 10 C 1.50698 * 109.47207 * 180.02562 * 9 8 7 11 11 N 1.30500 * 126.32219 * 269.93885 * 10 9 8 12 12 N 1.28518 * 110.12926 * 180.02562 * 11 10 9 13 13 C 1.31424 * 109.85564 * 0.02562 * 12 11 10 14 14 S 1.76202 * 126.50697 * 180.02562 * 13 12 11 15 15 C 1.76191 * 100.00265 * 359.97438 * 14 13 12 16 16 H 1.07999 * 119.99940 * 359.97438 * 15 14 13 17 17 C 1.38678 * 120.00093 * 179.97438 * 15 14 13 18 18 N 1.31628 * 119.99942 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99910 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47050 * 60.00425 * 19 17 15 21 21 H 1.48504 * 109.46878 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47335 * 300.00050 * 19 17 15 23 23 N 1.36690 * 126.32935 * 90.00087 * 10 9 8 24 24 C 1.40213 * 127.15997 * 359.95050 * 23 10 9 25 25 C 1.38824 * 120.06260 * 64.75268 * 24 23 10 26 26 C 1.38127 * 119.93007 * 179.70176 * 25 24 23 27 27 C 1.38278 * 120.06447 * 0.59860 * 26 25 24 28 28 C 1.38285 * 120.13169 * 359.67398 * 27 26 25 29 29 C 1.38122 * 120.06437 * 0.02567 * 28 27 26 30 30 H 1.08997 * 109.47552 * 270.31902 * 1 2 3 31 31 H 1.08999 * 109.47212 * 30.32224 * 1 2 3 32 32 H 1.09000 * 109.47127 * 150.31951 * 1 2 3 33 33 H 1.08006 * 119.97131 * 0.02562 * 3 2 1 34 34 H 1.07994 * 119.94972 * 179.70574 * 4 3 2 35 35 H 1.07997 * 119.97488 * 180.02562 * 5 4 3 36 36 H 1.08008 * 120.02808 * 180.02562 * 6 5 4 37 37 H 1.08993 * 109.46991 * 59.99680 * 9 8 7 38 38 H 1.09008 * 109.46444 * 300.00262 * 9 8 7 39 39 H 0.96996 * 120.00337 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.03606 * 359.97302 * 25 24 23 41 41 H 1.08001 * 119.96415 * 180.29090 * 26 25 24 42 42 H 1.08001 * 119.93533 * 179.70233 * 27 26 25 43 43 H 1.07998 * 119.96557 * 180.02562 * 28 27 26 44 44 H 1.07997 * 120.02814 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 -0.0062 5 6 4.2752 0.0010 -0.0057 6 6 3.5887 -1.1975 0.0005 7 6 2.2012 -1.2009 0.0067 8 8 1.5234 -2.3788 0.0138 9 6 2.3034 -3.5762 0.0144 10 6 1.3872 -4.7726 0.0220 11 7 0.9224 -5.3836 1.0773 12 7 0.1706 -6.3647 0.7251 13 6 0.1138 -6.4352 -0.5860 14 16 -0.7907 -7.6131 -1.5342 15 6 -1.5131 -8.5609 -0.2364 16 1 -1.3143 -8.3054 0.7939 17 6 -2.3370 -9.6348 -0.5380 18 7 -2.5789 -9.9465 -1.7937 19 14 -3.1024 -10.6400 0.8380 20 1 -3.9531 -9.7604 1.6793 21 1 -3.9340 -11.7238 0.2556 22 1 -2.0281 -11.2353 1.6728 23 7 0.8903 -5.4190 -1.0752 24 6 1.1263 -5.1064 -2.4215 25 6 2.4057 -5.2208 -2.9480 26 6 2.6340 -4.9180 -4.2762 27 6 1.5921 -4.4894 -5.0780 28 6 0.3177 -4.3691 -4.5548 29 6 0.0821 -4.6764 -3.2289 30 1 -0.3634 0.0057 1.0276 31 1 -0.3633 0.8871 -0.5188 32 1 -0.3633 -0.8928 -0.5089 33 1 1.6584 2.1315 0.0004 34 1 4.1194 2.1330 -0.0110 35 1 5.3552 0.0042 -0.0101 36 1 4.1314 -2.1313 0.0013 37 1 2.9362 -3.5970 0.9016 38 1 2.9283 -3.6031 -0.8784 39 1 -3.1555 -10.6974 -2.0047 40 1 3.2209 -5.5504 -2.3209 41 1 3.6282 -5.0113 -4.6876 42 1 1.7739 -4.2487 -6.1150 43 1 -0.4942 -4.0346 -5.1835 44 1 -0.9134 -4.5826 -2.8211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004124970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:32 Heat of formation + Delta-G solvation = 91.458124 kcal Electronic energy + Delta-G solvation = -29500.178236 eV Core-core repulsion = 25510.387830 eV Total energy + Delta-G solvation = -3989.790406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.40292 -40.32074 -39.14066 -37.60310 -34.48791 -33.02212 -32.70821 -31.49474 -31.00513 -29.96095 -29.54847 -27.27822 -26.73169 -25.62641 -23.60641 -22.93691 -22.38971 -21.70483 -21.64418 -20.37063 -18.55732 -18.25697 -17.42827 -16.45277 -16.22382 -16.00517 -15.94164 -15.68857 -15.26291 -14.97337 -14.68500 -14.50434 -14.30708 -14.05018 -13.64236 -13.53566 -13.28042 -13.09991 -12.97696 -12.52916 -12.39585 -12.23502 -11.95276 -11.50392 -11.44574 -11.41091 -11.25781 -11.15079 -11.12618 -11.02074 -10.75458 -10.32532 -10.19703 -9.96666 -9.71864 -9.08137 -9.01071 -8.97171 -8.90870 -8.75222 -8.25688 -6.87621 -6.51322 -4.26577 1.02012 1.13798 1.26309 1.28174 1.94010 2.32738 2.99809 3.18331 3.21270 3.23446 3.28234 3.58103 3.59432 3.66884 3.98229 4.40870 4.58818 4.70055 4.75479 4.78542 4.82188 4.87855 4.92844 4.95055 4.99056 5.04282 5.11110 5.24447 5.27465 5.39499 5.44372 5.51449 5.58621 5.63445 5.70601 5.86341 5.97987 6.07729 6.10309 6.16418 6.23192 6.28382 6.35685 6.36916 6.38742 6.55611 6.62249 6.70452 7.25902 7.40421 7.52792 8.32196 9.00327 9.27561 10.56598 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.002780 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.811180 B =10069.368586 C =11354.086491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.115 4.115 3 C -0.084 4.084 4 C -0.158 4.158 5 C -0.086 4.086 6 C -0.207 4.207 7 C 0.136 3.864 8 O -0.303 6.303 9 C 0.164 3.836 10 C 0.132 3.868 11 N -0.255 5.255 12 N -0.304 5.304 13 C 0.184 3.816 14 S 0.156 5.844 15 C -0.539 4.539 16 H 0.105 0.895 17 C 0.078 3.922 18 N -0.877 5.877 19 Si 0.933 3.067 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.269 1.269 23 N -0.431 5.431 24 C 0.129 3.871 25 C -0.111 4.111 26 C -0.109 4.109 27 C -0.112 4.112 28 C -0.104 4.104 29 C -0.093 4.093 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.276 0.724 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.073 18.928 -5.850 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.116 4.116 3 C -0.102 4.102 4 C -0.177 4.177 5 C -0.104 4.104 6 C -0.226 4.226 7 C 0.090 3.910 8 O -0.216 6.216 9 C 0.087 3.913 10 C -0.136 4.136 11 N -0.097 5.097 12 N -0.149 5.149 13 C -0.184 4.184 14 S 0.390 5.610 15 C -0.688 4.688 16 H 0.123 0.877 17 C -0.132 4.132 18 N -0.511 5.511 19 Si 0.758 3.242 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.194 1.194 23 N -0.126 5.126 24 C 0.037 3.963 25 C -0.131 4.131 26 C -0.128 4.128 27 C -0.131 4.131 28 C -0.123 4.123 29 C -0.113 4.113 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.150 0.850 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.356 18.225 -5.658 22.206 hybrid contribution 0.149 -0.338 0.774 0.858 sum 11.505 17.886 -4.885 21.821 Atomic orbital electron populations 1.20622 0.90441 1.02789 1.02488 1.19309 0.96675 0.90285 1.05311 1.20873 0.94137 0.96669 0.98565 1.21010 0.94197 0.98014 1.04451 1.20901 0.99701 0.91830 0.97959 1.21265 0.92902 0.99622 1.08782 1.18850 0.90438 0.85514 0.96230 1.86175 1.35515 1.11715 1.88146 1.20550 0.89774 0.78058 1.02928 1.23840 1.06561 1.00010 0.83193 1.73894 1.07950 1.03994 1.23837 1.74833 1.17895 1.14722 1.07498 1.28715 0.98204 0.95817 0.95690 1.83638 1.48018 1.22457 1.06922 1.23217 1.33889 1.16373 0.95277 0.87660 1.25074 0.94957 0.96095 0.97070 1.69931 1.35649 1.28238 1.17312 0.85961 0.79080 0.78726 0.80387 1.19347 1.20737 1.19373 1.43635 1.39200 1.24962 1.04807 1.17561 0.94700 1.02059 0.81949 1.21139 0.95555 1.00279 0.96147 1.20993 0.99609 0.99375 0.92779 1.21260 0.92839 0.98958 0.99993 1.21069 0.97366 0.99469 0.94350 1.21256 0.99036 0.96875 0.94100 0.91262 0.91769 0.91043 0.85517 0.86056 0.85898 0.85440 0.88799 0.90597 0.91471 0.85562 0.85205 0.85438 0.84976 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.79 36.01 0.35 -0.84 16 2 C -0.12 -1.37 5.89 -104.47 -0.62 -1.98 16 3 C -0.08 -0.82 9.70 -39.61 -0.38 -1.20 16 4 C -0.16 -1.41 10.04 -39.56 -0.40 -1.81 16 5 C -0.09 -0.79 10.04 -39.60 -0.40 -1.19 16 6 C -0.21 -2.25 9.04 -39.43 -0.36 -2.60 16 7 C 0.14 1.76 6.66 -39.22 -0.26 1.50 16 8 O -0.30 -4.62 9.17 -19.42 -0.18 -4.80 16 9 C 0.16 2.36 5.09 36.00 0.18 2.55 16 10 C 0.13 2.53 7.63 -153.89 -1.17 1.36 16 11 N -0.25 -5.80 12.18 33.01 0.40 -5.40 16 12 N -0.30 -7.70 11.04 30.78 0.34 -7.36 16 13 C 0.18 4.36 8.00 -87.86 -0.70 3.65 16 14 S 0.16 3.93 21.59 -107.50 -2.32 1.61 16 15 C -0.54 -15.08 9.37 30.89 0.29 -14.79 16 16 H 0.11 3.04 6.93 -52.49 -0.36 2.67 16 17 C 0.08 2.11 5.49 -17.48 -0.10 2.01 16 18 N -0.88 -24.31 13.22 55.48 0.73 -23.58 16 19 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 23 N -0.43 -8.49 2.84 -57.59 -0.16 -8.65 16 24 C 0.13 2.11 5.29 -83.59 -0.44 1.67 16 25 C -0.11 -1.49 9.02 -39.41 -0.36 -1.85 16 26 C -0.11 -1.16 10.04 -39.61 -0.40 -1.56 16 27 C -0.11 -1.15 10.04 -39.55 -0.40 -1.55 16 28 C -0.10 -1.23 10.04 -39.61 -0.40 -1.62 16 29 C -0.09 -1.41 9.93 -39.41 -0.39 -1.80 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.07 0.92 7.53 -51.93 -0.39 0.53 16 33 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.18 6.30 -52.48 -0.33 0.85 16 37 H 0.09 1.19 7.66 -51.93 -0.40 0.79 16 38 H 0.08 0.92 6.62 -51.92 -0.34 0.57 16 39 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 396.05 15.07 5.97 5.97 Total: -1.00 -33.08 396.05 -11.37 -44.45 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.19 Total: 1.60 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -5.94 Total: -20.06 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 1.31 Total: -44.98 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.18 Total: -4.80 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -2.32 Total: 1.61 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.08 -11.37 -44.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004124970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.910 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds