Wall clock time and date at job start Tue Mar 31 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38164 * 120.02804 * 2 1 4 4 C 1.38239 * 120.05840 * 180.29605 * 3 2 1 5 5 C 1.38288 * 120.11042 * 359.67875 * 4 3 2 6 6 C 1.38125 * 120.05327 * 0.02562 * 5 4 3 7 7 C 1.38709 * 120.02815 * 179.68127 * 2 1 3 8 8 O 1.35899 * 120.05856 * 359.97438 * 7 2 1 9 9 C 1.42899 * 117.00487 * 179.73038 * 8 7 2 10 10 C 1.50698 * 109.47207 * 180.02562 * 9 8 7 11 11 N 1.30500 * 126.32219 * 269.93885 * 10 9 8 12 12 N 1.28518 * 110.12926 * 180.02562 * 11 10 9 13 13 C 1.31424 * 109.85564 * 0.02562 * 12 11 10 14 14 S 1.76202 * 126.50697 * 180.02562 * 13 12 11 15 15 C 1.76191 * 100.00265 * 359.97438 * 14 13 12 16 16 H 1.07999 * 119.99940 * 359.97438 * 15 14 13 17 17 C 1.38678 * 120.00093 * 179.97438 * 15 14 13 18 18 N 1.31628 * 119.99942 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99910 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47050 * 60.00425 * 19 17 15 21 21 H 1.48504 * 109.46878 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47335 * 300.00050 * 19 17 15 23 23 N 1.36690 * 126.32935 * 90.00087 * 10 9 8 24 24 C 1.40213 * 127.15997 * 359.95050 * 23 10 9 25 25 C 1.38824 * 120.06260 * 64.75268 * 24 23 10 26 26 C 1.38127 * 119.93007 * 179.70176 * 25 24 23 27 27 C 1.38278 * 120.06447 * 0.59860 * 26 25 24 28 28 C 1.38285 * 120.13169 * 359.67398 * 27 26 25 29 29 C 1.38122 * 120.06437 * 0.02567 * 28 27 26 30 30 H 1.08997 * 109.47552 * 270.31902 * 1 2 3 31 31 H 1.08999 * 109.47212 * 30.32224 * 1 2 3 32 32 H 1.09000 * 109.47127 * 150.31951 * 1 2 3 33 33 H 1.08006 * 119.97131 * 0.02562 * 3 2 1 34 34 H 1.07994 * 119.94972 * 179.70574 * 4 3 2 35 35 H 1.07997 * 119.97488 * 180.02562 * 5 4 3 36 36 H 1.08008 * 120.02808 * 180.02562 * 6 5 4 37 37 H 1.08993 * 109.46991 * 59.99680 * 9 8 7 38 38 H 1.09008 * 109.46444 * 300.00262 * 9 8 7 39 39 H 0.96996 * 120.00337 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.03606 * 359.97302 * 25 24 23 41 41 H 1.08001 * 119.96415 * 180.29090 * 26 25 24 42 42 H 1.08001 * 119.93533 * 179.70233 * 27 26 25 43 43 H 1.07998 * 119.96557 * 180.02562 * 28 27 26 44 44 H 1.07997 * 120.02814 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 -0.0062 5 6 4.2752 0.0010 -0.0057 6 6 3.5887 -1.1975 0.0005 7 6 2.2012 -1.2009 0.0067 8 8 1.5234 -2.3788 0.0138 9 6 2.3034 -3.5762 0.0144 10 6 1.3872 -4.7726 0.0220 11 7 0.9224 -5.3836 1.0773 12 7 0.1706 -6.3647 0.7251 13 6 0.1138 -6.4352 -0.5860 14 16 -0.7907 -7.6131 -1.5342 15 6 -1.5131 -8.5609 -0.2364 16 1 -1.3143 -8.3054 0.7939 17 6 -2.3370 -9.6348 -0.5380 18 7 -2.5789 -9.9465 -1.7937 19 14 -3.1024 -10.6400 0.8380 20 1 -3.9531 -9.7604 1.6793 21 1 -3.9340 -11.7238 0.2556 22 1 -2.0281 -11.2353 1.6728 23 7 0.8903 -5.4190 -1.0752 24 6 1.1263 -5.1064 -2.4215 25 6 2.4057 -5.2208 -2.9480 26 6 2.6340 -4.9180 -4.2762 27 6 1.5921 -4.4894 -5.0780 28 6 0.3177 -4.3691 -4.5548 29 6 0.0821 -4.6764 -3.2289 30 1 -0.3634 0.0057 1.0276 31 1 -0.3633 0.8871 -0.5188 32 1 -0.3633 -0.8928 -0.5089 33 1 1.6584 2.1315 0.0004 34 1 4.1194 2.1330 -0.0110 35 1 5.3552 0.0042 -0.0101 36 1 4.1314 -2.1313 0.0013 37 1 2.9362 -3.5970 0.9016 38 1 2.9283 -3.6031 -0.8784 39 1 -3.1555 -10.6974 -2.0047 40 1 3.2209 -5.5504 -2.3209 41 1 3.6282 -5.0113 -4.6876 42 1 1.7739 -4.2487 -6.1150 43 1 -0.4942 -4.0346 -5.1835 44 1 -0.9134 -4.5826 -2.8211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004124970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:31 Heat of formation + Delta-G solvation = 75.188316 kcal Electronic energy + Delta-G solvation = -29500.883748 eV Core-core repulsion = 25510.387830 eV Total energy + Delta-G solvation = -3990.495917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.05665 -41.24216 -40.21723 -38.53331 -35.90480 -34.78534 -33.87004 -32.84403 -32.02956 -30.90184 -30.72921 -28.65487 -27.75257 -27.52456 -24.95869 -24.04308 -23.31118 -23.14128 -22.53548 -21.69651 -20.20286 -19.21683 -19.01429 -17.63951 -17.39863 -17.30948 -17.12768 -17.00565 -16.60935 -16.51416 -15.72291 -15.66323 -15.31254 -15.15533 -14.92152 -14.56966 -14.47996 -14.03741 -14.00618 -13.68106 -13.52408 -13.22579 -13.16524 -13.03797 -13.01977 -12.89333 -12.48162 -12.39394 -12.28699 -12.23529 -12.03961 -11.87672 -11.79908 -11.65034 -11.43568 -10.92510 -10.86470 -10.05651 -9.87589 -9.77628 -9.12496 -8.83708 -8.56573 -6.37014 -0.10081 0.28423 0.37415 0.46890 0.47939 0.58024 1.34013 1.37505 1.46352 1.48055 1.62515 2.09633 2.33227 2.61308 2.80783 2.84239 2.96894 3.15008 3.57915 3.76788 3.81306 3.84530 3.92419 3.93012 4.15574 4.19846 4.23792 4.37625 4.40171 4.40761 4.42455 4.52835 4.63861 4.64316 4.72498 4.73717 4.83560 4.94660 4.96487 5.26414 5.29853 5.31703 5.39942 5.41694 5.42890 5.50673 5.60202 5.70162 5.85720 6.03389 6.16329 6.34807 6.90440 7.53289 8.52614 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.002780 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.811180 B =10069.368586 C =11354.086491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.136 4.136 3 C -0.086 4.086 4 C -0.153 4.153 5 C -0.086 4.086 6 C -0.212 4.212 7 C 0.103 3.897 8 O -0.329 6.329 9 C 0.169 3.831 10 C 0.158 3.842 11 N -0.297 5.297 12 N -0.341 5.341 13 C 0.168 3.832 14 S 0.137 5.863 15 C -0.567 4.567 16 H 0.085 0.915 17 C 0.036 3.964 18 N -0.901 5.901 19 Si 0.995 3.005 20 H -0.269 1.269 21 H -0.262 1.262 22 H -0.267 1.267 23 N -0.418 5.418 24 C 0.084 3.916 25 C -0.117 4.117 26 C -0.098 4.098 27 C -0.096 4.096 28 C -0.104 4.104 29 C -0.116 4.116 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.140 0.860 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.282 0.718 40 H 0.134 0.866 41 H 0.171 0.829 42 H 0.171 0.829 43 H 0.157 0.843 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.823 21.312 -7.812 27.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.137 4.137 3 C -0.104 4.104 4 C -0.171 4.171 5 C -0.104 4.104 6 C -0.231 4.231 7 C 0.059 3.941 8 O -0.242 6.242 9 C 0.092 3.908 10 C -0.112 4.112 11 N -0.138 5.138 12 N -0.186 5.186 13 C -0.203 4.203 14 S 0.369 5.631 15 C -0.715 4.715 16 H 0.103 0.897 17 C -0.171 4.171 18 N -0.537 5.537 19 Si 0.816 3.184 20 H -0.193 1.193 21 H -0.186 1.186 22 H -0.192 1.192 23 N -0.110 5.110 24 C -0.006 4.006 25 C -0.136 4.136 26 C -0.116 4.116 27 C -0.114 4.114 28 C -0.122 4.122 29 C -0.136 4.136 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.158 0.842 37 H 0.129 0.871 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.152 0.848 41 H 0.188 0.812 42 H 0.188 0.812 43 H 0.174 0.826 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.133 20.653 -7.639 26.166 hybrid contribution -0.518 -0.765 1.270 1.570 sum 13.615 19.888 -6.370 24.929 Atomic orbital electron populations 1.20581 0.90825 1.02497 1.02148 1.19555 0.96836 0.90969 1.06337 1.21192 0.94886 0.96627 0.97661 1.21441 0.93968 0.99265 1.02462 1.21301 1.01232 0.91226 0.96666 1.21490 0.92004 1.01107 1.08474 1.19160 0.91607 0.84714 0.98664 1.86096 1.36495 1.12497 1.89124 1.20714 0.88523 0.76502 1.05046 1.24783 1.04222 0.99850 0.82326 1.73812 1.09654 1.04805 1.25490 1.74705 1.19018 1.16104 1.08784 1.28381 0.99555 0.96962 0.95434 1.83267 1.49592 1.23391 1.06850 1.23325 1.35299 1.17750 0.95167 0.89674 1.25922 0.94965 0.96712 0.99497 1.69987 1.36094 1.28817 1.18770 0.85053 0.78317 0.77514 0.77496 1.19349 1.18646 1.19199 1.43800 1.37372 1.23274 1.06603 1.17994 0.96678 1.05365 0.80529 1.21345 0.94174 1.00361 0.97733 1.21485 1.01641 0.97211 0.91248 1.21790 0.91533 0.96297 1.01785 1.21410 0.99331 0.98570 0.92884 1.21253 0.97761 0.98777 0.95822 0.91718 0.89493 0.93782 0.83176 0.83043 0.83025 0.84211 0.87065 0.87899 0.90817 0.84819 0.81194 0.81188 0.82584 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.37 9.79 71.24 0.70 -1.67 16 2 C -0.14 -3.14 5.89 -19.77 -0.12 -3.26 16 3 C -0.09 -1.45 9.70 22.25 0.22 -1.23 16 4 C -0.15 -2.16 10.04 22.28 0.22 -1.94 16 5 C -0.09 -1.30 10.04 22.25 0.22 -1.07 16 6 C -0.21 -4.16 9.04 22.37 0.20 -3.96 16 7 C 0.10 2.63 6.66 22.51 0.15 2.78 16 8 O -0.33 -10.27 9.17 -92.41 -0.85 -11.12 16 9 C 0.17 4.87 5.09 71.24 0.36 5.23 16 10 C 0.16 6.32 7.63 137.60 1.05 7.37 16 11 N -0.30 -14.31 12.18 -49.47 -0.60 -14.91 16 12 N -0.34 -18.53 11.04 -56.54 -0.62 -19.15 16 13 C 0.17 8.51 8.00 179.38 1.43 9.95 16 14 S 0.14 7.34 21.59 -56.49 -1.22 6.12 16 15 C -0.57 -33.56 9.37 67.93 0.64 -32.93 16 16 H 0.09 5.26 6.93 -2.91 -0.02 5.24 16 17 C 0.04 2.01 5.49 84.83 0.47 2.48 16 18 N -0.90 -51.30 13.22 21.63 0.29 -51.01 16 19 Si 0.99 44.62 29.55 68.60 2.03 46.65 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 23 N -0.42 -17.32 2.84 -336.13 -0.95 -18.27 16 24 C 0.08 2.81 5.29 38.08 0.20 3.02 16 25 C -0.12 -2.95 9.02 22.38 0.20 -2.75 16 26 C -0.10 -1.71 10.04 22.25 0.22 -1.49 16 27 C -0.10 -1.59 10.04 22.29 0.22 -1.36 16 28 C -0.10 -2.28 10.04 22.25 0.22 -2.05 16 29 C -0.12 -3.65 9.93 22.38 0.22 -3.43 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.49 8.09 -2.39 -0.02 1.47 16 32 H 0.04 1.22 7.53 -2.39 -0.02 1.20 16 33 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.14 2.26 6.30 -2.91 -0.02 2.24 16 37 H 0.11 2.77 7.66 -2.39 -0.02 2.75 16 38 H 0.10 2.36 6.62 -2.38 -0.02 2.35 16 39 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 40 H 0.13 3.09 8.06 -2.91 -0.02 3.06 16 41 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 44 H 0.11 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -78.99 396.05 5.94 -73.05 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 1.03 Total: 14.96 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 6.84 Total: -26.32 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -1.90 Total: -103.34 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.85 Total: -11.12 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 7.34 SS G_CDS: -1.22 Total: 6.12 kcal Total: -78.99 5.94 -73.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004124970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.240 kcal (2) G-P(sol) polarization free energy of solvation -78.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds