Wall clock time and date at job start Tue Mar 31 2020 05:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38309 * 119.95959 * 2 1 4 4 C 1.38264 * 120.15074 * 180.02562 * 3 2 1 5 5 C 1.38135 * 120.07150 * 359.74303 * 4 3 2 6 6 C 1.38892 * 119.92208 * 0.48659 * 5 4 3 7 7 N 1.39671 * 120.07127 * 179.79063 * 6 5 4 8 8 C 1.46498 * 120.00341 * 359.72196 * 7 6 5 9 9 C 1.50694 * 109.47407 * 180.02562 * 8 7 6 10 10 N 1.30507 * 126.33050 * 89.97765 * 9 8 7 11 11 N 1.28515 * 110.13327 * 180.02562 * 10 9 8 12 12 C 1.31429 * 109.85560 * 359.97438 * 11 10 9 13 13 S 1.76204 * 126.50885 * 179.97438 * 12 11 10 14 14 C 1.76198 * 99.99829 * 0.02584 * 13 12 11 15 15 H 1.07999 * 120.00293 * 359.97438 * 14 13 12 16 16 C 1.38675 * 119.99774 * 179.97438 * 14 13 12 17 17 N 1.31634 * 119.99918 * 359.72931 * 16 14 13 18 18 Si 1.86795 * 120.00044 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46896 * 60.00339 * 18 16 14 20 20 H 1.48505 * 109.47237 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47667 * 300.00545 * 18 16 14 22 22 N 1.36704 * 126.32679 * 270.24164 * 9 8 7 23 23 C 1.40205 * 127.15663 * 0.02562 * 22 9 8 24 24 C 1.38828 * 120.07102 * 64.89646 * 23 22 9 25 25 C 1.38121 * 119.93684 * 179.74476 * 24 23 22 26 26 C 1.38287 * 120.06271 * 0.53148 * 25 24 23 27 27 C 1.38274 * 120.12948 * 359.72234 * 26 25 24 28 28 C 1.38123 * 120.07189 * 0.02562 * 27 26 25 29 29 C 1.38079 * 119.96532 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46642 * 270.02269 * 1 2 3 31 31 H 1.08997 * 109.46992 * 30.02082 * 1 2 3 32 32 H 1.08997 * 109.47047 * 150.02141 * 1 2 3 33 33 H 1.08005 * 119.92733 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.96676 * 179.97438 * 4 3 2 35 35 H 1.08000 * 120.03642 * 180.27159 * 5 4 3 36 36 H 0.96997 * 120.00033 * 179.72207 * 7 6 5 37 37 H 1.08998 * 109.47422 * 59.99921 * 8 7 6 38 38 H 1.09004 * 109.47278 * 300.00008 * 8 7 6 39 39 H 0.97000 * 120.00211 * 180.02562 * 17 16 14 40 40 H 1.07998 * 120.02859 * 359.97438 * 24 23 22 41 41 H 1.08000 * 119.96814 * 180.23076 * 25 24 23 42 42 H 1.07995 * 119.93350 * 179.74372 * 26 25 24 43 43 H 1.08003 * 119.96589 * 179.97438 * 27 26 25 44 44 H 1.07999 * 120.03419 * 180.02562 * 28 27 26 45 45 H 1.07996 * 120.03389 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5804 1.2029 -0.0005 5 6 4.2765 0.0098 0.0043 6 6 3.5860 -1.1953 -0.0005 7 7 4.2867 -2.4035 -0.0001 8 6 5.7517 -2.4006 -0.0007 9 6 6.2569 -3.8204 -0.0007 10 7 6.5152 -4.5491 -1.0521 11 7 6.9287 -5.7119 -0.6936 12 6 6.9580 -5.7905 0.6180 13 16 7.4538 -7.1853 1.5739 14 6 7.8539 -8.3148 0.2821 15 1 7.7464 -8.0151 -0.7499 16 6 8.3069 -9.5886 0.5905 17 7 8.4431 -9.9521 1.8483 18 14 8.7305 -10.7863 -0.7789 19 1 9.8129 -10.2144 -1.6195 20 1 9.1870 -12.0707 -0.1896 21 1 7.5279 -11.0263 -1.6163 22 7 6.5244 -4.5847 1.1007 23 6 6.3855 -4.2111 2.4449 24 6 5.1283 -3.9302 2.9625 25 6 4.9941 -3.5675 4.2884 26 6 6.1117 -3.4733 5.0974 27 6 7.3658 -3.7473 4.5833 28 6 7.5057 -4.1156 3.2594 29 6 2.1967 -1.1962 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6558 2.1326 -0.0004 34 1 4.1167 2.1403 -0.0010 35 1 5.3565 0.0141 0.0083 36 1 3.8034 -3.2445 0.0006 37 1 6.1145 -1.8856 0.8888 38 1 6.1137 -1.8866 -0.8912 39 1 8.7603 -10.8430 2.0641 40 1 4.2557 -3.9989 2.3299 41 1 4.0159 -3.3525 4.6926 42 1 6.0048 -3.1855 6.1328 43 1 8.2369 -3.6725 5.2174 44 1 8.4854 -4.3299 2.8586 45 1 1.6567 -2.1315 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004126261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:04 Heat of formation + Delta-G solvation = 127.665638 kcal Electronic energy + Delta-G solvation = -29024.714384 eV Core-core repulsion = 25134.212716 eV Total energy + Delta-G solvation = -3890.501668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.121 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.42644 -39.57879 -39.15111 -36.11310 -34.46767 -32.72715 -32.49959 -31.46089 -31.04624 -29.57013 -29.03251 -26.98541 -26.17814 -25.47390 -23.54595 -22.90813 -22.48308 -21.66909 -21.01107 -20.21061 -18.59980 -17.63585 -17.08447 -16.43672 -16.22665 -16.05618 -15.65426 -15.43086 -14.99276 -14.55661 -14.48532 -14.27352 -14.17112 -13.97453 -13.68364 -13.55625 -13.42265 -13.12019 -12.98410 -12.66202 -12.33714 -12.18631 -11.96198 -11.50421 -11.43598 -11.42011 -11.16627 -11.15950 -11.03858 -10.76872 -10.39575 -10.21772 -10.13292 -9.95799 -9.73983 -9.09397 -8.98378 -8.92813 -8.79572 -8.77612 -7.49769 -6.89451 -6.53277 -4.28690 1.00212 1.25838 1.34365 1.55896 2.02906 2.31708 3.09679 3.16653 3.19653 3.23682 3.26474 3.58680 3.67901 3.79558 3.96236 4.38280 4.72394 4.78524 4.80509 4.81526 4.90839 4.95005 4.97857 5.03870 5.09101 5.19980 5.26459 5.32090 5.34885 5.38797 5.41866 5.47650 5.60564 5.65760 5.80379 5.85416 5.95753 5.98305 6.09038 6.23220 6.24397 6.35550 6.37435 6.44125 6.54554 6.59554 6.68995 6.77245 7.22814 7.38811 7.50715 7.59806 8.29898 8.98381 9.26381 10.54587 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.002574 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.018763 B =10877.418433 C =12227.074139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.041 4.041 3 C -0.185 4.185 4 C -0.068 4.068 5 C -0.204 4.204 6 C 0.228 3.772 7 N -0.739 5.739 8 C 0.230 3.770 9 C 0.119 3.881 10 N -0.262 5.262 11 N -0.306 5.306 12 C 0.182 3.818 13 S 0.154 5.846 14 C -0.539 4.539 15 H 0.105 0.895 16 C 0.077 3.923 17 N -0.876 5.876 18 Si 0.933 3.067 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.269 1.269 22 N -0.433 5.433 23 C 0.125 3.875 24 C -0.099 4.099 25 C -0.109 4.109 26 C -0.111 4.111 27 C -0.106 4.106 28 C -0.097 4.097 29 C -0.196 4.196 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.401 0.599 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.276 0.724 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.901 19.747 5.780 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.041 4.041 3 C -0.205 4.205 4 C -0.087 4.087 5 C -0.227 4.227 6 C 0.124 3.876 7 N -0.370 5.370 8 C 0.103 3.897 9 C -0.150 4.150 10 N -0.103 5.103 11 N -0.151 5.151 12 C -0.187 4.187 13 S 0.387 5.613 14 C -0.687 4.687 15 H 0.123 0.877 16 C -0.132 4.132 17 N -0.511 5.511 18 Si 0.758 3.242 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.194 1.194 22 N -0.128 5.128 23 C 0.034 3.966 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.129 4.129 27 C -0.125 4.125 28 C -0.116 4.116 29 C -0.219 4.219 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.236 0.764 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.383 18.966 5.580 21.883 hybrid contribution -0.006 -0.686 -0.767 1.029 sum -9.389 18.280 4.813 21.106 Atomic orbital electron populations 1.20800 0.91543 1.02613 1.02201 1.19596 0.95497 0.92600 0.96433 1.20730 0.94126 0.97085 1.08549 1.20840 0.94059 0.97157 0.96622 1.20626 0.99599 0.91190 1.11285 1.17757 0.90915 0.85963 0.92922 1.44748 1.04561 1.05661 1.81998 1.19231 0.80327 0.87452 1.02659 1.24450 1.10340 0.97208 0.82966 1.73922 1.12868 0.99478 1.24018 1.74835 1.21858 1.11074 1.07322 1.28717 1.01401 0.92776 0.95816 1.83651 1.74110 0.96705 1.06792 1.23205 1.51435 0.98825 0.95283 0.87711 1.25074 0.93797 0.97314 0.97032 1.69934 1.43139 1.20931 1.17101 0.85963 0.79434 0.78402 0.80363 1.19362 1.20723 1.19394 1.43701 1.52787 1.11466 1.04846 1.17547 0.94286 1.02704 0.82061 1.21101 0.95550 0.99284 0.95962 1.21002 0.99165 0.99775 0.92840 1.21261 0.92513 0.99186 0.99966 1.21055 0.97982 0.99008 0.94413 1.21261 0.98210 0.98065 0.94114 1.20422 0.91849 0.98070 1.11567 0.91222 0.91620 0.91657 0.86771 0.86377 0.86275 0.76383 0.90883 0.89228 0.91468 0.85825 0.85316 0.85470 0.85006 0.84951 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.04 -0.40 5.88 -104.65 -0.62 -1.02 16 3 C -0.18 -1.78 9.70 -39.55 -0.38 -2.16 16 4 C -0.07 -0.67 10.04 -39.61 -0.40 -1.06 16 5 C -0.20 -2.22 9.31 -39.38 -0.37 -2.59 16 6 C 0.23 2.65 6.65 -83.79 -0.56 2.10 16 7 N -0.74 -9.05 5.72 -59.81 -0.34 -9.40 16 8 C 0.23 3.04 5.23 -5.20 -0.03 3.02 16 9 C 0.12 2.12 7.37 -153.88 -1.13 0.99 16 10 N -0.26 -5.69 12.18 33.02 0.40 -5.29 16 11 N -0.31 -7.52 11.04 30.78 0.34 -7.18 16 12 C 0.18 4.17 8.00 -87.85 -0.70 3.47 16 13 S 0.15 3.82 21.59 -107.50 -2.32 1.50 16 14 C -0.54 -14.94 9.37 30.89 0.29 -14.65 16 15 H 0.10 3.00 6.93 -52.49 -0.36 2.63 16 16 C 0.08 2.09 5.49 -17.47 -0.10 1.99 16 17 N -0.88 -24.17 13.22 55.48 0.73 -23.44 16 18 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 N -0.43 -8.09 2.84 -57.59 -0.16 -8.25 16 23 C 0.13 1.96 5.19 -83.59 -0.43 1.53 16 24 C -0.10 -1.32 9.90 -39.41 -0.39 -1.71 16 25 C -0.11 -1.18 10.04 -39.61 -0.40 -1.58 16 26 C -0.11 -1.12 10.04 -39.55 -0.40 -1.52 16 27 C -0.11 -1.20 10.04 -39.61 -0.40 -1.59 16 28 C -0.10 -1.39 9.93 -39.40 -0.39 -1.78 16 29 C -0.20 -2.15 9.55 -39.38 -0.38 -2.53 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.11 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.12 1.19 6.73 -52.49 -0.35 0.83 16 36 H 0.40 5.12 8.48 -40.82 -0.35 4.77 16 37 H 0.07 0.89 7.75 -51.93 -0.40 0.48 16 38 H 0.09 1.13 7.96 -51.93 -0.41 0.72 16 39 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 45 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 404.14 15.07 6.09 6.09 Total: -1.00 -31.51 404.14 -12.36 -43.86 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.66 Total: 5.59 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -6.41 Total: -19.60 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.97 Total: -53.55 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.32 Total: 1.50 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.51 -12.36 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004126261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.529 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds