Wall clock time and date at job start Tue Mar 31 2020 05:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38309 * 119.95959 * 2 1 4 4 C 1.38264 * 120.15074 * 180.02562 * 3 2 1 5 5 C 1.38135 * 120.07150 * 359.74303 * 4 3 2 6 6 C 1.38892 * 119.92208 * 0.48659 * 5 4 3 7 7 N 1.39671 * 120.07127 * 179.79063 * 6 5 4 8 8 C 1.46498 * 120.00341 * 359.72196 * 7 6 5 9 9 C 1.50694 * 109.47407 * 180.02562 * 8 7 6 10 10 N 1.30507 * 126.33050 * 89.97765 * 9 8 7 11 11 N 1.28515 * 110.13327 * 180.02562 * 10 9 8 12 12 C 1.31429 * 109.85560 * 359.97438 * 11 10 9 13 13 S 1.76204 * 126.50885 * 179.97438 * 12 11 10 14 14 C 1.76198 * 99.99829 * 0.02584 * 13 12 11 15 15 H 1.07999 * 120.00293 * 359.97438 * 14 13 12 16 16 C 1.38675 * 119.99774 * 179.97438 * 14 13 12 17 17 N 1.31634 * 119.99918 * 359.72931 * 16 14 13 18 18 Si 1.86795 * 120.00044 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46896 * 60.00339 * 18 16 14 20 20 H 1.48505 * 109.47237 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47667 * 300.00545 * 18 16 14 22 22 N 1.36704 * 126.32679 * 270.24164 * 9 8 7 23 23 C 1.40205 * 127.15663 * 0.02562 * 22 9 8 24 24 C 1.38828 * 120.07102 * 64.89646 * 23 22 9 25 25 C 1.38121 * 119.93684 * 179.74476 * 24 23 22 26 26 C 1.38287 * 120.06271 * 0.53148 * 25 24 23 27 27 C 1.38274 * 120.12948 * 359.72234 * 26 25 24 28 28 C 1.38123 * 120.07189 * 0.02562 * 27 26 25 29 29 C 1.38079 * 119.96532 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46642 * 270.02269 * 1 2 3 31 31 H 1.08997 * 109.46992 * 30.02082 * 1 2 3 32 32 H 1.08997 * 109.47047 * 150.02141 * 1 2 3 33 33 H 1.08005 * 119.92733 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.96676 * 179.97438 * 4 3 2 35 35 H 1.08000 * 120.03642 * 180.27159 * 5 4 3 36 36 H 0.96997 * 120.00033 * 179.72207 * 7 6 5 37 37 H 1.08998 * 109.47422 * 59.99921 * 8 7 6 38 38 H 1.09004 * 109.47278 * 300.00008 * 8 7 6 39 39 H 0.97000 * 120.00211 * 180.02562 * 17 16 14 40 40 H 1.07998 * 120.02859 * 359.97438 * 24 23 22 41 41 H 1.08000 * 119.96814 * 180.23076 * 25 24 23 42 42 H 1.07995 * 119.93350 * 179.74372 * 26 25 24 43 43 H 1.08003 * 119.96589 * 179.97438 * 27 26 25 44 44 H 1.07999 * 120.03419 * 180.02562 * 28 27 26 45 45 H 1.07996 * 120.03389 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5804 1.2029 -0.0005 5 6 4.2765 0.0098 0.0043 6 6 3.5860 -1.1953 -0.0005 7 7 4.2867 -2.4035 -0.0001 8 6 5.7517 -2.4006 -0.0007 9 6 6.2569 -3.8204 -0.0007 10 7 6.5152 -4.5491 -1.0521 11 7 6.9287 -5.7119 -0.6936 12 6 6.9580 -5.7905 0.6180 13 16 7.4538 -7.1853 1.5739 14 6 7.8539 -8.3148 0.2821 15 1 7.7464 -8.0151 -0.7499 16 6 8.3069 -9.5886 0.5905 17 7 8.4431 -9.9521 1.8483 18 14 8.7305 -10.7863 -0.7789 19 1 9.8129 -10.2144 -1.6195 20 1 9.1870 -12.0707 -0.1896 21 1 7.5279 -11.0263 -1.6163 22 7 6.5244 -4.5847 1.1007 23 6 6.3855 -4.2111 2.4449 24 6 5.1283 -3.9302 2.9625 25 6 4.9941 -3.5675 4.2884 26 6 6.1117 -3.4733 5.0974 27 6 7.3658 -3.7473 4.5833 28 6 7.5057 -4.1156 3.2594 29 6 2.1967 -1.1962 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6558 2.1326 -0.0004 34 1 4.1167 2.1403 -0.0010 35 1 5.3565 0.0141 0.0083 36 1 3.8034 -3.2445 0.0006 37 1 6.1145 -1.8856 0.8888 38 1 6.1137 -1.8866 -0.8912 39 1 8.7603 -10.8430 2.0641 40 1 4.2557 -3.9989 2.3299 41 1 4.0159 -3.3525 4.6926 42 1 6.0048 -3.1855 6.1328 43 1 8.2369 -3.6725 5.2174 44 1 8.4854 -4.3299 2.8586 45 1 1.6567 -2.1315 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004126261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:03 Heat of formation + Delta-G solvation = 112.711667 kcal Electronic energy + Delta-G solvation = -29025.362837 eV Core-core repulsion = 25134.212716 eV Total energy + Delta-G solvation = -3891.150121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.121 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.02964 -40.39757 -40.19706 -37.08604 -35.82292 -34.77899 -33.29792 -32.62801 -32.02966 -30.75716 -30.20649 -27.93192 -27.68455 -26.94804 -24.86095 -23.97171 -23.28273 -23.11463 -22.10877 -21.27443 -20.19122 -19.11087 -18.12885 -17.55436 -17.40681 -17.17058 -17.09697 -16.99521 -16.36965 -15.71956 -15.46448 -15.35566 -15.17790 -14.96705 -14.84448 -14.51007 -14.39081 -14.33518 -13.89161 -13.72228 -13.53699 -13.06342 -13.03522 -12.97685 -12.94025 -12.86066 -12.46614 -12.35643 -12.23975 -12.07382 -11.83132 -11.79205 -11.63880 -11.42840 -11.00318 -10.89203 -10.84234 -10.04476 -9.87210 -9.56187 -8.81640 -8.56348 -8.38350 -6.36235 -0.08028 0.29838 0.54579 0.56642 0.63146 0.75892 1.34013 1.38320 1.47263 1.58447 1.64397 2.09555 2.50443 2.62207 2.84468 2.96860 3.00801 3.10436 3.77344 3.83270 3.85900 3.99184 4.10529 4.16222 4.19959 4.28458 4.37637 4.38070 4.47123 4.55520 4.56537 4.61292 4.68112 4.72061 4.88207 4.88674 4.95341 5.00514 5.08190 5.26799 5.32134 5.32826 5.41900 5.43949 5.45504 5.67709 5.71519 5.83562 5.97303 6.06241 6.16499 6.34768 6.62979 6.90932 7.58303 8.52653 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.002574 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.018763 B =10877.418433 C =12227.074139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.048 4.048 3 C -0.188 4.188 4 C -0.072 4.072 5 C -0.216 4.216 6 C 0.213 3.787 7 N -0.740 5.740 8 C 0.240 3.760 9 C 0.152 3.848 10 N -0.303 5.303 11 N -0.343 5.343 12 C 0.167 3.833 13 S 0.133 5.867 14 C -0.565 4.565 15 H 0.085 0.915 16 C 0.036 3.964 17 N -0.901 5.901 18 Si 0.994 3.006 19 H -0.268 1.268 20 H -0.263 1.263 21 H -0.269 1.269 22 N -0.419 5.419 23 C 0.085 3.915 24 C -0.105 4.105 25 C -0.103 4.103 26 C -0.095 4.095 27 C -0.103 4.103 28 C -0.115 4.115 29 C -0.209 4.209 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.125 0.875 36 H 0.397 0.603 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.282 0.718 40 H 0.121 0.879 41 H 0.161 0.839 42 H 0.168 0.832 43 H 0.159 0.841 44 H 0.114 0.886 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.320 22.233 7.617 26.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.049 4.049 3 C -0.207 4.207 4 C -0.090 4.090 5 C -0.238 4.238 6 C 0.111 3.889 7 N -0.371 5.371 8 C 0.113 3.887 9 C -0.118 4.118 10 N -0.142 5.142 11 N -0.187 5.187 12 C -0.205 4.205 13 S 0.365 5.635 14 C -0.714 4.714 15 H 0.103 0.897 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.815 3.185 19 H -0.193 1.193 20 H -0.188 1.188 21 H -0.194 1.194 22 N -0.112 5.112 23 C -0.005 4.005 24 C -0.124 4.124 25 C -0.121 4.121 26 C -0.112 4.112 27 C -0.121 4.121 28 C -0.134 4.134 29 C -0.231 4.231 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.143 0.857 36 H 0.231 0.769 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.139 0.861 41 H 0.178 0.822 42 H 0.186 0.814 43 H 0.177 0.823 44 H 0.132 0.868 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.826 21.510 7.434 25.203 hybrid contribution 0.300 -1.146 -1.236 1.712 sum -10.527 20.364 6.198 23.747 Atomic orbital electron populations 1.20841 0.89847 1.03324 1.03023 1.19935 0.96891 0.92340 0.95694 1.21069 0.94334 0.97846 1.07486 1.21153 0.94418 0.97660 0.95767 1.20818 1.00092 0.91366 1.11549 1.17893 0.91255 0.85688 0.94040 1.44539 1.03676 1.05958 1.82970 1.19322 0.81244 0.84270 1.03876 1.25286 1.06465 0.98037 0.81990 1.73854 1.15398 0.99365 1.25605 1.74719 1.22628 1.12800 1.08563 1.28332 1.02880 0.93792 0.95533 1.83282 1.76099 0.97376 1.06732 1.23309 1.52594 1.00284 0.95193 0.89715 1.25905 0.93325 0.98540 0.99365 1.69990 1.43535 1.21614 1.18527 0.85067 0.79037 0.76799 0.77568 1.19269 1.18752 1.19360 1.43836 1.50826 1.09935 1.06559 1.17906 0.95971 1.05798 0.80777 1.21191 0.94287 0.99617 0.97322 1.21413 1.01082 0.98139 0.91505 1.21753 0.91328 0.96554 1.01602 1.21409 0.99908 0.97694 0.93102 1.21294 0.97072 0.99482 0.95600 1.20581 0.91756 0.98784 1.12013 0.90250 0.90322 0.91589 0.84696 0.84166 0.85716 0.76895 0.89176 0.88382 0.90875 0.86097 0.82156 0.81410 0.82343 0.86814 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 71.24 0.71 -0.72 16 2 C -0.05 -0.86 5.88 -19.88 -0.12 -0.97 16 3 C -0.19 -3.12 9.70 22.29 0.22 -2.90 16 4 C -0.07 -1.22 10.04 22.25 0.22 -1.00 16 5 C -0.22 -4.33 9.31 22.40 0.21 -4.12 16 6 C 0.21 4.75 6.65 38.21 0.25 5.00 16 7 N -0.74 -17.89 5.72 -343.15 -1.96 -19.86 16 8 C 0.24 6.27 5.23 85.63 0.45 6.72 16 9 C 0.15 5.59 7.37 137.59 1.01 6.60 16 10 N -0.30 -13.74 12.18 -49.46 -0.60 -14.34 16 11 N -0.34 -17.87 11.04 -56.53 -0.62 -18.49 16 12 C 0.17 8.08 8.00 179.38 1.43 9.51 16 13 S 0.13 6.96 21.59 -56.49 -1.22 5.75 16 14 C -0.57 -32.93 9.37 67.92 0.64 -32.29 16 15 H 0.08 5.15 6.93 -2.91 -0.02 5.13 16 16 C 0.04 1.97 5.49 84.83 0.47 2.43 16 17 N -0.90 -50.79 13.22 21.62 0.29 -50.51 16 18 Si 0.99 44.19 29.55 68.60 2.03 46.21 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 N -0.42 -16.25 2.84 -336.11 -0.95 -17.20 16 23 C 0.09 2.69 5.19 38.09 0.20 2.89 16 24 C -0.10 -2.67 9.90 22.38 0.22 -2.45 16 25 C -0.10 -1.89 10.04 22.25 0.22 -1.67 16 26 C -0.09 -1.52 10.04 22.29 0.22 -1.30 16 27 C -0.10 -2.08 10.04 22.25 0.22 -1.85 16 28 C -0.11 -3.29 9.93 22.39 0.22 -3.07 16 29 C -0.21 -4.35 9.55 22.40 0.21 -4.13 16 30 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 32 H 0.07 0.82 8.08 -2.39 -0.02 0.80 16 33 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.12 2.27 6.73 -2.91 -0.02 2.25 16 36 H 0.40 10.27 8.48 -92.71 -0.79 9.48 16 37 H 0.09 2.09 7.75 -2.39 -0.02 2.07 16 38 H 0.10 2.43 7.96 -2.38 -0.02 2.41 16 39 H 0.28 14.66 8.31 -92.71 -0.77 13.88 16 40 H 0.12 3.10 8.06 -2.91 -0.02 3.07 16 41 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 42 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 43 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 44 H 0.11 3.61 8.06 -2.91 -0.02 3.58 16 45 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -72.74 404.14 4.21 -68.53 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.24 Total: 23.23 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 7.02 Total: -23.32 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -3.86 Total: -120.40 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 6.96 SS G_CDS: -1.22 Total: 5.75 kcal Total: -72.74 4.21 -68.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004126261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.242 kcal (2) G-P(sol) polarization free energy of solvation -72.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds