Wall clock time and date at job start Tue Mar 31 2020 04:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99667 * 2 1 4 4 C 1.53000 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47157 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.46715 * 180.02562 * 5 4 3 7 7 C 1.36617 * 119.89374 * 270.01557 * 6 5 4 8 8 S 1.76202 * 119.15186 * 359.97438 * 7 6 5 9 9 C 1.76201 * 100.00170 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99819 * 359.97438 * 9 8 7 11 11 C 1.38733 * 120.00283 * 180.02562 * 9 8 7 12 12 N 1.31569 * 119.99968 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99933 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47416 * 59.99566 * 13 11 9 15 15 H 1.48505 * 109.46873 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47133 * 299.99408 * 13 11 9 17 17 N 1.31126 * 121.69487 * 180.02562 * 7 6 5 18 18 C 1.34828 * 121.47000 * 359.95725 * 17 7 6 19 19 S 1.75555 * 130.73315 * 180.02562 * 18 17 7 20 20 C 1.76288 * 92.43534 * 179.97438 * 19 18 17 21 21 C 1.32680 * 111.26734 * 0.04866 * 20 19 18 22 22 C 1.38760 * 119.67237 * 0.02562 * 18 17 7 23 23 C 1.34783 * 119.89839 * 90.00369 * 6 5 4 24 24 O 1.21892 * 120.67160 * 0.04483 * 23 6 5 25 25 C 1.52864 * 110.18620 * 179.97438 * 21 20 19 26 26 C 1.54425 * 104.91525 * 17.60620 * 25 21 20 27 27 C 1.52594 * 138.22902 * 180.02562 * 20 19 18 28 28 H 1.08999 * 109.47256 * 299.99906 * 1 2 3 29 29 H 1.09003 * 109.47200 * 59.99765 * 1 2 3 30 30 H 1.09006 * 109.46903 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46996 * 60.00450 * 3 2 1 32 32 H 1.08994 * 109.47525 * 300.00143 * 3 2 1 33 33 H 1.09000 * 109.47356 * 59.99516 * 4 3 2 34 34 H 1.09006 * 109.46685 * 300.00381 * 4 3 2 35 35 H 1.08994 * 109.47271 * 59.99870 * 5 4 3 36 36 H 1.09001 * 109.46842 * 299.99655 * 5 4 3 37 37 H 0.96996 * 119.99831 * 180.02562 * 12 11 9 38 38 H 1.08990 * 110.35448 * 136.44803 * 25 21 20 39 39 H 1.09001 * 110.35329 * 258.63261 * 25 21 20 40 40 H 1.08997 * 111.09775 * 215.36712 * 26 25 21 41 41 H 1.09000 * 111.03661 * 91.42352 * 26 25 21 42 42 H 1.09002 * 110.36599 * 281.36969 * 27 20 19 43 43 H 1.09005 * 110.36354 * 43.57658 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5825 0.0000 6 7 5.6181 2.4667 -0.0012 7 6 6.2978 2.4116 1.1826 8 16 5.3955 2.4823 2.6944 9 6 6.7230 2.3764 3.8483 10 1 7.7404 2.2956 3.4950 11 6 6.4612 2.3959 5.2105 12 7 5.2218 2.4939 5.6409 13 14 7.8686 2.2843 6.4337 14 1 8.7936 3.4280 6.2297 15 1 7.3275 2.3263 7.8160 16 1 8.6036 1.0105 6.2278 17 7 7.6044 2.3085 1.2227 18 6 8.3408 2.2510 0.0948 19 16 10.0759 2.1136 -0.1347 20 6 9.9205 2.1264 -1.8906 21 6 8.6504 2.2282 -2.2606 22 6 7.7107 2.3019 -1.1404 23 6 6.2869 2.4146 -1.1703 24 8 5.6891 2.4637 -2.2314 25 6 8.5443 2.2377 -3.7856 26 6 9.8952 1.6772 -4.2814 27 6 10.8295 2.0543 -3.1142 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8567 0.6439 -0.8908 34 1 3.8574 0.6436 0.8891 35 1 3.8364 3.1228 0.8904 36 1 3.8358 3.1239 -0.8896 37 1 5.0388 2.5078 6.5934 38 1 7.7255 1.5970 -4.1126 39 1 8.3976 3.2548 -4.1491 40 1 10.2073 2.1654 -5.2046 41 1 9.8466 0.5960 -4.4102 42 1 11.2960 3.0222 -3.2977 43 1 11.5912 1.2870 -2.9761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004169098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:43 Heat of formation + Delta-G solvation = -33.164717 kcal Electronic energy + Delta-G solvation = -27988.552750 eV Core-core repulsion = 24058.395060 eV Total energy + Delta-G solvation = -3930.157690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 366.086 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.01081 -38.56704 -37.91060 -36.92296 -35.40542 -32.98305 -32.54186 -31.53339 -28.29522 -27.64547 -27.29247 -25.98626 -25.51522 -23.83615 -23.31423 -21.58862 -20.91660 -19.31228 -18.74416 -17.55559 -17.24007 -16.78161 -16.31147 -16.09617 -15.97438 -15.54047 -15.24336 -15.19244 -14.75792 -14.47789 -14.18661 -14.06703 -13.25009 -12.89623 -12.81817 -12.69905 -12.58319 -12.28766 -12.19818 -12.03350 -11.83959 -11.59406 -11.54812 -11.34942 -11.28129 -11.09465 -11.06898 -10.88688 -10.70719 -10.61974 -10.46868 -9.66958 -9.64362 -9.54024 -9.36549 -9.29108 -9.12451 -8.18917 -7.91217 -6.98856 -6.76639 -4.52018 0.76874 1.47929 2.11714 2.17565 2.32361 2.53430 2.96647 3.08414 3.08925 3.13329 3.73870 3.78721 4.04494 4.54492 4.67667 4.69877 4.71800 4.80817 5.02429 5.05014 5.06963 5.19504 5.22178 5.27147 5.33881 5.36559 5.48990 5.51044 5.59019 5.61305 5.65718 5.73679 5.77948 5.79913 5.98700 6.05050 6.11577 6.20781 6.24717 6.37563 6.54458 6.67013 7.06160 7.14523 7.31730 8.15304 8.25090 8.29293 8.76851 10.30092 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.006317 B = 0.004492 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4431.345472 B = 6232.007069 C =10299.252116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.069 3.931 4 C -0.135 4.135 5 C 0.099 3.901 6 N -0.524 5.524 7 C 0.332 3.668 8 S 0.202 5.798 9 C -0.544 4.544 10 H 0.118 0.882 11 C 0.080 3.920 12 N -0.867 5.867 13 Si 0.936 3.064 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.266 1.266 17 N -0.516 5.516 18 C 0.137 3.863 19 S 0.172 5.828 20 C -0.257 4.257 21 C -0.032 4.032 22 C -0.281 4.281 23 C 0.570 3.430 24 O -0.545 6.545 25 C -0.058 4.058 26 C -0.118 4.118 27 C -0.032 4.032 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.280 0.720 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.032 -0.579 -11.494 11.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.009 4.009 4 C -0.173 4.173 5 C -0.024 4.024 6 N -0.248 5.248 7 C -0.035 4.035 8 S 0.446 5.554 9 C -0.692 4.692 10 H 0.136 0.864 11 C -0.131 4.131 12 N -0.500 5.500 13 Si 0.760 3.240 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.191 1.191 17 N -0.246 5.246 18 C -0.106 4.106 19 S 0.434 5.566 20 C -0.374 4.374 21 C -0.043 4.043 22 C -0.301 4.301 23 C 0.366 3.634 24 O -0.425 6.425 25 C -0.098 4.098 26 C -0.157 4.157 27 C -0.071 4.071 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.009 -0.724 -9.933 9.959 hybrid contribution 0.230 0.222 -0.893 0.948 sum 0.221 -0.503 -10.826 10.840 Atomic orbital electron populations 1.22729 0.81155 1.02615 0.99947 1.87885 1.19575 1.27996 1.95430 1.22366 0.93180 0.84778 1.00544 1.21793 0.93658 0.97100 1.04783 1.21714 0.77386 0.98233 1.05076 1.46284 1.08909 1.63429 1.06138 1.26459 0.91478 0.92228 0.93309 1.83602 1.08817 1.76733 0.86207 1.23621 0.96272 1.57960 0.91360 0.86435 1.25195 0.97448 0.92658 0.97829 1.69891 1.18838 1.44299 1.16963 0.85910 0.80291 0.79831 0.77948 1.19133 1.20556 1.19105 1.68689 1.02121 1.29028 1.24752 1.23643 0.99146 0.96252 0.91595 1.83664 0.98434 1.76649 0.97861 1.25149 0.99093 1.16019 0.97132 1.20640 0.90908 0.98028 0.94773 1.19989 0.93120 1.24217 0.92756 1.16592 0.87022 0.77008 0.82805 1.90799 1.70508 1.52671 1.28514 1.21083 0.97819 1.01791 0.89067 1.22359 0.94659 1.01349 0.97355 1.20755 0.96016 1.01671 0.88703 0.93898 0.94240 0.89780 0.92453 0.93106 0.90502 0.89598 0.88201 0.88233 0.90976 0.90497 0.90355 0.90327 0.90807 0.90599 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.49 10.70 -35.23 -0.38 -5.87 16 3 C 0.07 0.88 5.94 37.16 0.22 1.11 16 4 C -0.13 -2.06 5.91 -26.73 -0.16 -2.22 16 5 C 0.10 1.58 4.90 -4.04 -0.02 1.56 16 6 N -0.52 -10.25 2.61 -118.93 -0.31 -10.57 16 7 C 0.33 7.13 7.78 -88.40 -0.69 6.44 16 8 S 0.20 4.45 19.59 -107.50 -2.11 2.35 16 9 C -0.54 -13.64 9.24 30.92 0.29 -13.36 16 10 H 0.12 3.03 6.52 -52.48 -0.34 2.69 16 11 C 0.08 1.97 5.49 -17.48 -0.10 1.87 16 12 N -0.87 -21.92 13.22 55.49 0.73 -21.19 16 13 Si 0.94 19.49 29.55 -169.99 -5.02 14.47 16 14 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 15 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 17 N -0.52 -11.64 8.45 -11.59 -0.10 -11.74 16 18 C 0.14 2.85 7.66 -16.04 -0.12 2.73 16 19 S 0.17 2.92 23.24 -107.50 -2.50 0.42 16 20 C -0.26 -4.02 7.25 -35.25 -0.26 -4.28 16 21 C -0.03 -0.56 6.59 -102.15 -0.67 -1.24 16 22 C -0.28 -5.74 6.07 -104.64 -0.64 -6.38 16 23 C 0.57 11.89 7.51 -14.47 -0.11 11.78 16 24 O -0.55 -11.73 16.66 5.02 0.08 -11.64 16 25 C -0.06 -0.82 6.83 -26.05 -0.18 -1.00 16 26 C -0.12 -1.25 7.15 -25.36 -0.18 -1.43 16 27 C -0.03 -0.36 6.81 -26.31 -0.18 -0.54 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.10 1.48 6.55 -51.93 -0.34 1.14 16 36 H 0.10 1.48 7.44 -51.93 -0.39 1.09 16 37 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -29.67 386.14 -11.15 -40.83 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.70 Total: 0.65 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.68 Total: -3.53 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.32 Total: -43.50 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.29 Total: -17.51 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Atomic # 16 Polarization: 7.38 SS G_CDS: -4.60 Total: 2.77 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.67 -11.15 -40.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004169098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.662 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds