Wall clock time and date at job start Tue Mar 31 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99596 * 2 1 4 4 H 1.48504 * 109.46795 * 269.99738 * 3 2 1 5 5 H 1.48493 * 109.47574 * 29.99605 * 3 2 1 6 6 H 1.48500 * 109.47217 * 150.00094 * 3 2 1 7 7 C 1.37874 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99877 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00276 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99569 * 269.99747 * 10 9 7 12 12 C 1.53006 * 109.47182 * 269.99895 * 11 10 9 13 13 C 1.50699 * 109.46867 * 180.02562 * 12 11 10 14 14 C 1.38234 * 119.61236 * 124.72990 * 13 12 11 15 15 C 1.38629 * 119.15384 * 179.75097 * 14 13 12 16 16 C 1.38673 * 118.42689 * 0.51263 * 15 14 13 17 17 C 1.38186 * 119.15875 * 359.73002 * 16 15 14 18 18 N 1.31848 * 119.62130 * 305.00068 * 13 12 11 19 19 C 1.34771 * 120.00084 * 89.99820 * 10 9 7 20 20 O 1.21592 * 120.00040 * 180.02562 * 19 10 9 21 21 N 1.34780 * 120.00241 * 0.02562 * 19 10 9 22 22 C 1.40148 * 120.00077 * 185.29983 * 21 19 10 23 23 C 1.38853 * 120.19477 * 33.12853 * 22 21 19 24 24 C 1.37867 * 120.28064 * 180.20034 * 23 22 21 25 25 C 1.39290 * 120.33427 * 0.02562 * 24 23 22 26 26 C 1.38967 * 118.97448 * 359.62763 * 25 24 23 27 27 C 1.37634 * 120.84193 * 0.57702 * 26 25 24 28 28 C 1.51663 * 106.99477 * 180.58303 * 26 25 24 29 29 C 1.54698 * 101.94752 * 15.72231 * 28 26 25 30 30 O 1.36238 * 129.78850 * 179.61062 * 25 24 23 31 31 H 0.97005 * 120.00201 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.46912 * 59.99495 * 9 7 2 33 33 H 1.09004 * 109.46991 * 300.00138 * 9 7 2 34 34 H 1.08996 * 109.47198 * 30.00081 * 11 10 9 35 35 H 1.09004 * 109.46787 * 150.00144 * 11 10 9 36 36 H 1.09003 * 109.46830 * 300.00218 * 12 11 10 37 37 H 1.08993 * 109.46640 * 60.00290 * 12 11 10 38 38 H 1.07992 * 120.42132 * 359.97438 * 14 13 12 39 39 H 1.08004 * 120.78702 * 180.25716 * 15 14 13 40 40 H 1.07994 * 120.42516 * 179.70548 * 16 15 14 41 41 H 1.07998 * 119.61887 * 180.02562 * 17 16 15 42 42 H 0.97005 * 120.00003 * 5.29075 * 21 19 10 43 43 H 1.07999 * 119.85926 * 0.17337 * 23 22 21 44 44 H 1.07998 * 119.83167 * 180.02562 * 24 23 22 45 45 H 1.07995 * 120.01334 * 179.64022 * 27 26 25 46 46 H 1.08999 * 110.93755 * 257.55191 * 28 26 25 47 47 H 1.08994 * 110.94492 * 133.89943 * 28 26 25 48 48 H 1.09004 * 110.74470 * 92.92324 * 29 28 26 49 49 H 1.08999 * 110.75075 * 216.08940 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.2436 -3.2659 1.2697 12 6 5.6885 -3.0256 1.7120 13 6 5.9393 -3.7367 3.0167 14 6 6.9839 -4.6368 3.1143 15 6 7.2092 -5.2818 4.3206 16 6 6.3653 -5.0041 5.3853 17 6 5.3384 -4.0959 5.2114 18 7 5.1567 -3.4971 4.0504 19 6 4.2250 -3.2103 -1.1662 20 8 4.6299 -4.3568 -1.1663 21 7 4.0012 -2.5745 -2.3334 22 6 4.1281 -3.2681 -3.5446 23 6 3.8031 -4.6162 -3.6148 24 6 3.9312 -5.3012 -4.8044 25 6 4.3880 -4.6480 -5.9466 26 6 4.7038 -3.2969 -5.8686 27 6 4.5811 -2.6110 -4.6816 28 6 5.1519 -2.8658 -7.2519 29 6 4.6447 -4.0332 -8.1311 30 8 4.5924 -5.1307 -7.2041 31 1 -0.4851 0.8401 0.0004 32 1 3.8745 -0.6799 0.8911 33 1 3.8752 -0.6803 -0.8889 34 1 3.5625 -2.8820 2.0291 35 1 4.0767 -4.3352 1.1391 36 1 6.3696 -3.4096 0.9525 37 1 5.8553 -1.9564 1.8425 38 1 7.6185 -4.8324 2.2627 39 1 8.0203 -5.9869 4.4274 40 1 6.5084 -5.4917 6.3382 41 1 4.6769 -3.8738 6.0358 42 1 3.7523 -1.6370 -2.3351 43 1 3.4490 -5.1305 -2.7336 44 1 3.6760 -6.3496 -4.8508 45 1 4.8358 -1.5626 -4.6347 46 1 6.2376 -2.7837 -7.3017 47 1 4.6786 -1.9271 -7.5397 48 1 3.6530 -3.8152 -8.5278 49 1 5.3455 -4.2403 -8.9398 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004307714.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:53 Heat of formation + Delta-G solvation = 14.750904 kcal Electronic energy + Delta-G solvation = -32170.221511 eV Core-core repulsion = 27870.185054 eV Total energy + Delta-G solvation = -4300.036457 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.01167 -40.24252 -39.82286 -37.43601 -35.47032 -34.15436 -33.18232 -32.59913 -32.43878 -32.18311 -29.53758 -29.14661 -28.45581 -27.40217 -24.29728 -23.47428 -23.36386 -22.77430 -21.99735 -21.83068 -21.06328 -19.18793 -17.74371 -17.31944 -17.14781 -16.84775 -16.76669 -16.32677 -16.16656 -15.77247 -15.56951 -14.98024 -14.76789 -14.30021 -14.03059 -13.89862 -13.71892 -13.48128 -13.29145 -13.16330 -12.95677 -12.90032 -12.77697 -12.60784 -12.48638 -12.37032 -12.09158 -11.89563 -11.78320 -11.57837 -11.17476 -11.06099 -10.81491 -10.64459 -10.55147 -10.33892 -9.87521 -9.70778 -9.60167 -9.40374 -9.33911 -8.96903 -8.76343 -8.70185 -7.89758 -7.30480 -6.24129 -4.26721 1.11125 1.28195 1.48906 1.52479 3.11574 3.13613 3.22375 3.24865 3.35349 3.61130 3.82580 4.05588 4.22682 4.29486 4.40361 4.46398 4.62948 4.77323 4.84605 4.88664 4.99795 5.05020 5.05289 5.12359 5.26813 5.34912 5.46773 5.53946 5.55795 5.60928 5.61511 5.65817 5.73881 5.83226 5.96155 6.03144 6.08673 6.14053 6.15106 6.26571 6.35973 6.49557 6.49993 6.56008 6.59499 6.71208 6.74191 7.04737 7.14690 7.38076 7.41667 7.57272 8.06059 8.22760 8.50033 8.83309 9.10016 9.34420 10.88463 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.007005 B = 0.002912 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3996.386581 B = 9613.639040 C =12822.029696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.869 3.131 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.210 3.790 10 N -0.603 5.603 11 C 0.150 3.850 12 C -0.088 4.088 13 C 0.144 3.856 14 C -0.169 4.169 15 C -0.076 4.076 16 C -0.186 4.186 17 C 0.103 3.897 18 N -0.476 5.476 19 C 0.711 3.289 20 O -0.599 6.599 21 N -0.680 5.680 22 C 0.163 3.837 23 C -0.087 4.087 24 C -0.114 4.114 25 C 0.072 3.928 26 C -0.156 4.156 27 C -0.106 4.106 28 C -0.107 4.107 29 C 0.053 3.947 30 O -0.309 6.309 31 H 0.267 0.733 32 H 0.040 0.960 33 H 0.019 0.981 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.155 0.845 42 H 0.414 0.586 43 H 0.147 0.853 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.074 0.926 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.682 -6.134 -3.699 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.126 4.126 3 Si 0.695 3.305 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.098 0.902 9 C 0.089 3.911 10 N -0.335 5.335 11 C 0.025 3.975 12 C -0.127 4.127 13 C 0.006 3.994 14 C -0.189 4.189 15 C -0.102 4.102 16 C -0.206 4.206 17 C -0.055 4.055 18 N -0.186 5.186 19 C 0.413 3.587 20 O -0.479 6.479 21 N -0.328 5.328 22 C 0.066 3.934 23 C -0.107 4.107 24 C -0.134 4.134 25 C 0.027 3.973 26 C -0.158 4.158 27 C -0.127 4.127 28 C -0.144 4.144 29 C -0.023 4.023 30 O -0.224 6.224 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.172 0.828 42 H 0.254 0.746 43 H 0.164 0.836 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.106 0.894 47 H 0.108 0.892 48 H 0.092 0.908 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.101 -6.399 -3.761 15.057 hybrid contribution 0.861 1.113 0.197 1.420 sum 13.961 -5.286 -3.564 15.348 Atomic orbital electron populations 1.69888 1.06235 1.27208 1.49115 1.24880 0.94721 0.98812 0.94215 0.86965 0.80582 0.84104 0.78811 1.19930 1.20771 1.18789 1.21379 0.88902 0.95128 1.52671 0.90218 1.19759 0.96064 0.78059 0.97225 1.47115 1.66966 1.15967 1.03486 1.21082 0.93906 0.97826 0.84655 1.21020 0.99787 1.00549 0.91363 1.21251 0.90496 0.93308 0.94343 1.22027 0.99699 0.98391 0.98786 1.21554 0.98261 0.97662 0.92733 1.22098 0.97607 1.00841 1.00055 1.22790 0.95520 0.92296 0.94856 1.67549 1.27140 1.24296 0.99588 1.15756 0.78233 0.84178 0.80537 1.90840 1.53882 1.16744 1.86443 1.42774 1.72048 1.15059 1.02925 1.17317 0.98847 0.92168 0.85027 1.20977 0.98742 0.93530 0.97463 1.20098 1.02928 1.00513 0.89831 1.19469 0.99283 0.92368 0.86194 1.20364 1.05328 0.94608 0.95483 1.19882 1.01834 1.00229 0.90766 1.21743 1.02086 0.99513 0.91096 1.23748 1.01791 0.84571 0.92148 1.86801 1.88319 1.32677 1.14574 0.92320 0.94182 0.96304 0.88845 0.90725 0.90128 0.89794 0.84851 0.85112 0.85113 0.82814 0.74646 0.83585 0.85455 0.85633 0.89392 0.89221 0.90806 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 13.96 55.43 0.77 -24.76 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 19.30 27.47 -169.99 -4.67 14.63 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 7 C -0.54 -14.02 9.94 -34.44 -0.34 -14.36 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 9 C 0.21 4.49 4.04 -5.19 -0.02 4.47 16 10 N -0.60 -12.05 2.46 -180.80 -0.44 -12.49 16 11 C 0.15 2.74 5.26 -4.04 -0.02 2.72 16 12 C -0.09 -1.35 5.94 -27.88 -0.17 -1.52 16 13 C 0.14 2.09 6.18 -82.59 -0.51 1.58 16 14 C -0.17 -2.06 9.71 -39.44 -0.38 -2.44 16 15 C -0.08 -0.78 10.18 -39.28 -0.40 -1.18 16 16 C -0.19 -1.86 10.11 -39.44 -0.40 -2.26 16 17 C 0.10 1.23 11.18 -17.55 -0.20 1.04 16 18 N -0.48 -7.20 9.88 -9.47 -0.09 -7.30 16 19 C 0.71 14.40 8.02 -86.92 -0.70 13.70 16 20 O -0.60 -12.92 13.61 5.29 0.07 -12.85 16 21 N -0.68 -12.56 5.23 -14.16 -0.07 -12.63 16 22 C 0.16 2.81 6.29 -83.58 -0.53 2.29 16 23 C -0.09 -1.50 8.64 -39.49 -0.34 -1.84 16 24 C -0.11 -1.77 10.06 -39.33 -0.40 -2.16 16 25 C 0.07 1.07 7.04 -38.92 -0.27 0.80 16 26 C -0.16 -2.16 6.27 -104.10 -0.65 -2.81 16 27 C -0.11 -1.57 9.95 -39.55 -0.39 -1.96 16 28 C -0.11 -1.06 7.11 -26.52 -0.19 -1.24 16 29 C 0.05 0.50 8.01 38.05 0.30 0.80 16 30 O -0.31 -4.21 11.11 -20.50 -0.23 -4.43 16 31 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.04 0.85 7.13 -51.93 -0.37 0.48 16 33 H 0.02 0.38 5.72 -51.93 -0.30 0.09 16 34 H 0.09 1.82 7.88 -51.93 -0.41 1.41 16 35 H 0.07 1.42 7.42 -51.93 -0.39 1.04 16 36 H 0.08 1.21 7.87 -51.93 -0.41 0.80 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.13 1.41 7.95 -52.49 -0.42 1.00 16 39 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.41 7.42 6.51 -40.82 -0.27 7.15 16 43 H 0.15 2.74 6.41 -52.49 -0.34 2.41 16 44 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 45 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 408.11 15.07 6.15 6.15 Total: -1.00 -32.17 408.11 -10.92 -43.09 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -6.71 Total: 13.02 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -5.70 Total: -2.43 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.16 Total: -57.18 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.16 Total: -17.28 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.67 Total: 14.63 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.17 -10.92 -43.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004307714.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.840 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds