Wall clock time and date at job start Tue Mar 31 2020 05:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99860 * 2 1 4 4 H 1.48500 * 109.47391 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47322 * 300.00293 * 3 2 1 6 6 H 1.48501 * 109.47056 * 60.00131 * 3 2 1 7 7 C 1.37879 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99642 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47162 * 179.97438 * 9 7 2 11 11 S 1.80999 * 109.47571 * 180.02562 * 10 9 7 12 12 C 1.76196 * 100.00313 * 180.02562 * 11 10 9 13 13 N 1.31026 * 118.46505 * 0.02562 * 12 11 10 14 14 C 1.34811 * 121.60821 * 179.97438 * 13 12 11 15 15 C 1.39818 * 121.61651 * 180.02562 * 14 13 12 16 16 C 1.36636 * 119.66255 * 179.97438 * 15 14 13 17 17 C 1.38905 * 120.97295 * 359.97438 * 16 15 14 18 18 C 1.36759 * 120.73022 * 359.97438 * 17 16 15 19 19 C 1.39412 * 119.51224 * 0.02562 * 18 17 16 20 20 C 1.46920 * 121.88448 * 180.02562 * 19 18 17 21 21 O 1.21722 * 121.25248 * 359.94474 * 20 19 18 22 22 N 1.35347 * 117.49230 * 179.97438 * 20 19 18 23 23 C 1.46499 * 119.77032 * 179.97438 * 22 20 19 24 24 C 1.50704 * 109.47154 * 270.02053 * 23 22 20 25 25 C 1.38237 * 119.99995 * 269.73166 * 24 23 22 26 26 C 1.38234 * 120.00225 * 179.76283 * 25 24 23 27 27 C 1.38233 * 119.99776 * 0.50752 * 26 25 24 28 28 C 1.38238 * 119.99826 * 359.74122 * 27 26 25 29 29 C 1.38235 * 120.00470 * 0.02562 * 28 27 26 30 30 H 0.96999 * 120.00054 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.46953 * 60.00031 * 9 7 2 32 32 H 1.09001 * 109.47158 * 300.00051 * 9 7 2 33 33 H 1.09005 * 109.47007 * 60.00253 * 10 9 7 34 34 H 1.08993 * 109.47431 * 300.00439 * 10 9 7 35 35 H 1.07993 * 120.17146 * 359.97438 * 15 14 13 36 36 H 1.08001 * 119.51149 * 180.28156 * 16 15 14 37 37 H 1.08001 * 119.62882 * 180.02562 * 17 16 15 38 38 H 1.08003 * 120.24267 * 180.02562 * 18 17 16 39 39 H 1.09001 * 109.47620 * 30.01523 * 23 22 20 40 40 H 1.08996 * 109.47284 * 150.02475 * 23 22 20 41 41 H 1.08008 * 119.99897 * 359.97438 * 25 24 23 42 42 H 1.07999 * 120.00002 * 180.22378 * 26 25 24 43 43 H 1.08000 * 120.00100 * 179.72591 * 27 26 25 44 44 H 1.08001 * 119.99685 * 179.97438 * 28 27 26 45 45 H 1.07997 * 120.00298 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 16 1.3405 -5.2296 -0.0026 12 6 2.6902 -6.3621 -0.0032 13 7 3.9090 -5.8811 -0.0025 14 6 4.9877 -6.6897 -0.0024 15 6 6.2883 -6.1767 -0.0012 16 6 7.3531 -7.0330 -0.0006 17 6 7.1637 -8.4091 -0.0008 18 6 5.9038 -8.9411 -0.0009 19 6 4.7992 -8.0906 -0.0015 20 6 3.4232 -8.6056 -0.0012 21 8 3.1965 -9.8016 -0.0014 22 7 2.4171 -7.7002 -0.0013 23 6 1.0258 -8.1588 -0.0015 24 6 0.5491 -8.3165 -1.4225 25 6 -0.0494 -7.2534 -2.0727 26 6 -0.4822 -7.3965 -3.3777 27 6 -0.3261 -8.6057 -4.0290 28 6 0.2676 -9.6703 -3.3770 29 6 0.7049 -9.5259 -2.0736 30 1 -0.4850 0.8400 0.0004 31 1 0.6241 -2.5566 -0.8903 32 1 0.6248 -2.5570 0.8897 33 1 2.8727 -3.6047 0.8878 34 1 2.8714 -3.6039 -0.8922 35 1 6.4506 -5.1090 -0.0006 36 1 8.3567 -6.6341 0.0050 37 1 8.0209 -9.0660 0.0001 38 1 5.7656 -10.0123 -0.0006 39 1 0.9591 -9.1177 0.5124 40 1 0.4020 -7.4272 0.5118 41 1 -0.1756 -6.3100 -1.5622 42 1 -0.9465 -6.5649 -3.8869 43 1 -0.6683 -8.7189 -5.0471 44 1 0.3892 -10.6152 -3.8858 45 1 1.1684 -10.3577 -1.5642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004512307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:52 Heat of formation + Delta-G solvation = 33.080543 kcal Electronic energy + Delta-G solvation = -29466.068825 eV Core-core repulsion = 25539.172889 eV Total energy + Delta-G solvation = -3926.895936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.64564 -39.43345 -38.45280 -37.45423 -34.84637 -33.79227 -31.96164 -31.14822 -31.05773 -30.95453 -30.05498 -26.99560 -25.47432 -25.05730 -23.93168 -22.69923 -21.99958 -21.49897 -21.30105 -19.03914 -18.87316 -17.68977 -17.06789 -16.65182 -16.19867 -16.03739 -15.51488 -15.20327 -15.09779 -14.99697 -14.58326 -14.55730 -14.04194 -13.96919 -13.72916 -13.56419 -13.48920 -13.26820 -12.72969 -12.52944 -12.38044 -12.24903 -12.16724 -11.88007 -11.74305 -11.42520 -11.13912 -11.09875 -10.72538 -10.42232 -10.36849 -10.22997 -10.07319 -9.92827 -9.74145 -9.26860 -9.23578 -8.98426 -8.92929 -8.58516 -8.49684 -7.47830 -6.14972 -4.19115 0.39319 0.75644 1.05442 1.20304 1.34762 2.11208 2.37573 2.65195 2.67065 3.24594 3.32815 3.36966 3.73253 3.90808 4.09324 4.29754 4.36368 4.54095 4.61361 4.71415 4.81866 4.93773 5.00893 5.10544 5.13383 5.21816 5.25360 5.27766 5.36213 5.45693 5.55182 5.78225 5.86883 5.90658 5.92848 5.96793 6.02353 6.11076 6.15714 6.30559 6.36832 6.42792 6.45282 6.54798 6.60462 6.69192 6.90756 7.39478 7.45109 7.58874 7.72799 7.80824 8.16558 8.85644 9.45754 10.95907 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.007650 B = 0.003400 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3659.059620 B = 8233.095044 C =11136.851722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.034 3.966 10 C -0.077 4.077 11 S -0.031 6.031 12 C 0.378 3.622 13 N -0.530 5.530 14 C 0.182 3.818 15 C -0.117 4.117 16 C -0.071 4.071 17 C -0.153 4.153 18 C -0.037 4.037 19 C -0.213 4.213 20 C 0.557 3.443 21 O -0.516 6.516 22 N -0.524 5.524 23 C 0.131 3.869 24 C -0.119 4.119 25 C -0.093 4.093 26 C -0.122 4.122 27 C -0.111 4.111 28 C -0.130 4.130 29 C -0.094 4.094 30 H 0.263 0.737 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.139 0.861 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 -18.819 -2.877 19.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.080 0.920 9 C -0.006 4.006 10 C -0.225 4.225 11 S 0.208 5.792 12 C 0.006 3.994 13 N -0.256 5.256 14 C 0.066 3.934 15 C -0.137 4.137 16 C -0.090 4.090 17 C -0.172 4.172 18 C -0.057 4.057 19 C -0.220 4.220 20 C 0.350 3.650 21 O -0.391 6.391 22 N -0.248 5.248 23 C 0.010 3.990 24 C -0.120 4.120 25 C -0.112 4.112 26 C -0.140 4.140 27 C -0.129 4.129 28 C -0.148 4.148 29 C -0.112 4.112 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.157 0.843 42 H 0.145 0.855 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.153 -18.849 -2.842 19.509 hybrid contribution 1.687 0.328 -0.072 1.720 sum 5.840 -18.520 -2.914 19.637 Atomic orbital electron populations 1.69961 1.06080 1.26931 1.50021 1.24996 0.94902 0.99355 0.94899 0.86452 0.80131 0.83268 0.77697 1.19552 1.20882 1.20878 1.21066 0.93248 0.89716 1.51745 0.92012 1.19026 0.93430 0.89568 0.98543 1.24148 1.01831 0.90230 1.06280 1.85904 1.05169 1.00699 1.87451 1.25330 0.98133 0.85171 0.90804 1.69062 0.95355 1.34324 1.26904 1.18756 0.93083 0.88277 0.93242 1.20678 0.89556 1.01006 1.02455 1.21014 0.99077 0.93289 0.95626 1.20852 0.96882 0.95378 1.04097 1.20697 0.91047 0.99737 0.94206 1.20528 0.93197 0.94650 1.13641 1.18365 0.84873 0.85672 0.76129 1.90802 1.84566 1.13926 1.49814 1.46552 1.09154 1.05429 1.63621 1.20907 0.79444 1.03430 0.95230 1.19897 1.01544 0.94876 0.95733 1.21546 0.96092 0.98500 0.95099 1.21222 1.00230 0.97690 0.94886 1.21242 0.98561 0.93325 0.99781 1.21125 0.99685 0.99040 0.94925 1.21173 0.98042 0.97117 0.94882 0.92755 0.95431 0.95423 0.89231 0.89209 0.84244 0.85134 0.85379 0.84906 0.87205 0.87225 0.84349 0.85498 0.86072 0.86115 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -13.64 9.11 -34.44 -0.31 -13.95 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.80 4.98 -27.89 -0.14 0.66 16 10 C -0.08 -1.48 4.72 37.16 0.18 -1.31 16 11 S -0.03 -0.48 17.21 -107.50 -1.85 -2.33 16 12 C 0.38 6.02 7.78 -88.53 -0.69 5.33 16 13 N -0.53 -8.90 8.95 -10.91 -0.10 -8.99 16 14 C 0.18 2.81 6.62 -84.78 -0.56 2.24 16 15 C -0.12 -1.50 9.99 -39.57 -0.40 -1.90 16 16 C -0.07 -0.72 9.95 -39.91 -0.40 -1.12 16 17 C -0.15 -1.55 9.97 -39.87 -0.40 -1.94 16 18 C -0.04 -0.46 9.63 -39.68 -0.38 -0.85 16 19 C -0.21 -3.19 5.89 -104.76 -0.62 -3.80 16 20 C 0.56 8.73 7.66 -12.49 -0.10 8.63 16 21 O -0.52 -8.44 15.89 5.17 0.08 -8.35 16 22 N -0.52 -7.76 2.61 -118.70 -0.31 -8.07 16 23 C 0.13 1.64 5.08 -5.19 -0.03 1.62 16 24 C -0.12 -1.52 5.46 -104.62 -0.57 -2.09 16 25 C -0.09 -1.19 9.27 -39.58 -0.37 -1.56 16 26 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 27 C -0.11 -1.18 10.05 -39.58 -0.40 -1.57 16 28 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 29 C -0.09 -1.15 9.70 -39.58 -0.38 -1.53 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.74 8.09 -51.91 -0.42 1.32 16 34 H 0.09 1.75 8.09 -51.92 -0.42 1.33 16 35 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.13 1.50 7.82 -52.48 -0.41 1.09 16 39 H 0.11 1.27 7.41 -51.93 -0.38 0.89 16 40 H 0.11 1.25 6.42 -51.93 -0.33 0.92 16 41 H 0.14 1.79 5.65 -52.48 -0.30 1.49 16 42 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 45 H 0.13 1.54 7.63 -52.49 -0.40 1.14 16 LS Contribution 392.03 15.07 5.91 5.91 Total: -1.00 -30.30 392.03 -12.59 -42.90 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.59 Total: 3.08 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -6.45 Total: -15.23 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.33 Total: -41.57 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.08 Total: -8.35 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -1.85 Total: -2.33 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.30 -12.59 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004512307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.977 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds