Wall clock time and date at job start Tue Mar 31 2020 06:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38286 * 119.92679 * 2 1 4 4 C 1.38111 * 120.07241 * 180.02562 * 3 2 1 5 5 C 1.38885 * 119.92915 * 0.02562 * 4 3 2 6 6 N 1.39860 * 120.07358 * 180.02562 * 5 4 3 7 7 C 1.34772 * 120.00450 * 146.79708 * 6 5 4 8 8 O 1.21641 * 119.99562 * 354.71801 * 7 6 5 9 9 C 1.47175 * 120.00745 * 174.72679 * 7 6 5 10 10 C 1.38004 * 126.81322 * 0.02562 * 9 7 6 11 11 N 1.34127 * 107.93340 * 179.97438 * 10 9 7 12 12 C 1.46504 * 125.13920 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.46917 * 124.99985 * 12 11 10 14 14 H 1.08000 * 119.99959 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00120 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99509 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00246 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47098 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47173 * 120.00666 * 17 15 13 20 20 H 1.48506 * 109.47161 * 240.00273 * 17 15 13 21 21 N 1.39775 * 109.72457 * 359.74995 * 11 10 9 22 22 C 1.31569 * 109.05606 * 0.43277 * 21 11 10 23 23 C 1.47700 * 126.53863 * 179.84978 * 22 21 11 24 24 C 1.34866 * 125.27296 * 324.69014 * 23 22 21 25 25 C 1.37936 * 114.69603 * 179.72851 * 24 23 22 26 26 C 1.33633 * 115.06816 * 0.26594 * 25 24 23 27 27 S 1.75851 * 109.77151 * 0.02562 * 26 25 24 28 28 C 1.38888 * 119.85518 * 0.27454 * 5 4 3 29 29 C 1.38115 * 119.92490 * 359.42670 * 28 5 4 30 30 H 1.08995 * 109.47584 * 90.00009 * 1 2 3 31 31 H 1.09007 * 109.47007 * 209.99974 * 1 2 3 32 32 H 1.09003 * 109.47136 * 329.99580 * 1 2 3 33 33 H 1.08000 * 119.96655 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.03636 * 180.02562 * 4 3 2 35 35 H 0.96999 * 119.99629 * 326.78654 * 6 5 4 36 36 H 1.08004 * 126.03615 * 359.94772 * 10 9 7 37 37 H 1.08995 * 109.46993 * 245.00073 * 12 11 10 38 38 H 1.08998 * 109.46660 * 5.00072 * 12 11 10 39 39 H 0.97003 * 119.99828 * 179.97438 * 16 15 13 40 40 H 1.07996 * 122.64626 * 359.97438 * 24 23 22 41 41 H 1.08000 * 122.46145 * 180.29249 * 25 24 23 42 42 H 1.08006 * 125.11173 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.03517 * 179.72109 * 28 5 4 44 44 H 1.08000 * 119.96484 * 180.29443 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5780 1.2020 -0.0005 5 6 4.2739 0.0001 -0.0016 6 7 5.6725 0.0001 -0.0016 7 6 6.3465 -0.9770 0.6366 8 8 5.7422 -1.8040 1.2927 9 6 7.8136 -1.0433 0.5401 10 6 8.6360 -0.1840 -0.1598 11 7 9.9019 -0.5931 0.0110 12 6 11.0822 0.0523 -0.5692 13 6 12.0573 0.3950 0.5274 14 1 11.8216 0.1555 1.5539 15 6 13.2508 1.0132 0.2204 16 7 13.5379 1.3043 -1.0296 17 14 14.4592 1.4386 1.5798 18 1 13.9032 1.0100 2.8883 19 1 15.7457 0.7382 1.3356 20 1 14.6897 2.9056 1.5960 21 7 9.9254 -1.7246 0.8313 22 6 8.6925 -2.0358 1.1693 23 6 8.2735 -3.1650 2.0242 24 6 8.8645 -4.3768 2.0589 25 6 8.2968 -5.2697 2.9437 26 6 7.2473 -4.8014 3.6257 27 16 6.9238 -3.1391 3.1519 28 6 3.5781 -1.2018 -0.0079 29 6 2.1969 -1.1984 -0.0011 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6551 2.1328 -0.0004 34 1 4.1162 2.1383 -0.0001 35 1 6.1575 0.7034 -0.4611 36 1 8.3166 0.6673 -0.7427 37 1 11.5562 -0.6268 -1.2778 38 1 10.7808 0.9638 -1.0854 39 1 14.3774 1.7397 -1.2457 40 1 9.7174 -4.6267 1.4454 41 1 8.6730 -6.2734 3.0758 42 1 6.6828 -5.3598 4.3578 43 1 4.1163 -2.1381 -0.0133 44 1 1.6552 -2.1327 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004516879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:26 Heat of formation + Delta-G solvation = 97.132047 kcal Electronic energy + Delta-G solvation = -28910.991061 eV Core-core repulsion = 24921.446695 eV Total energy + Delta-G solvation = -3989.544366 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.85600 -40.01925 -38.33238 -37.29837 -35.00070 -33.90123 -32.16082 -31.89217 -30.99456 -30.04008 -29.13084 -27.22011 -26.26943 -24.30646 -23.52056 -23.01314 -22.25179 -21.25762 -20.40918 -19.84142 -18.50313 -18.11630 -16.99674 -16.91606 -16.50754 -15.67255 -15.48443 -15.34722 -15.08711 -14.72116 -14.42207 -14.27054 -14.07239 -13.82930 -13.75823 -13.43232 -13.24908 -12.83439 -12.67362 -12.46834 -12.34832 -12.25761 -12.12314 -11.93359 -11.80061 -11.68168 -11.20912 -11.12529 -11.01540 -10.56626 -10.41848 -10.26709 -10.14736 -9.92059 -9.64487 -9.25432 -8.97554 -8.78617 -8.41540 -8.04072 -7.87364 -7.76565 -6.40685 -4.46781 1.02352 1.21637 1.35965 1.84040 1.98625 2.41147 2.67359 3.02041 3.14128 3.18524 3.22755 3.24156 3.31681 3.59708 3.86310 4.19573 4.62690 4.73534 4.78815 4.86758 4.96109 4.97815 5.12300 5.27768 5.32006 5.34272 5.39420 5.42359 5.57629 5.66709 5.75833 5.76067 5.81200 5.90074 5.97763 6.23990 6.31399 6.35378 6.42736 6.51042 6.55415 6.63396 6.76478 6.77138 6.90715 7.02262 7.38701 7.46431 7.63489 7.64999 8.16780 8.31941 8.60979 9.20494 10.68318 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.008729 B = 0.002783 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.921044 B =10059.543877 C =12675.626065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.112 4.112 3 C -0.102 4.102 4 C -0.148 4.148 5 C 0.156 3.844 6 N -0.677 5.677 7 C 0.599 3.401 8 O -0.517 6.517 9 C -0.320 4.320 10 C 0.106 3.894 11 N -0.305 5.305 12 C 0.249 3.751 13 C -0.534 4.534 14 H 0.072 0.928 15 C 0.065 3.935 16 N -0.892 5.892 17 Si 0.909 3.091 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.281 1.281 21 N -0.250 5.250 22 C 0.167 3.833 23 C -0.113 4.113 24 C -0.121 4.121 25 C -0.141 4.141 26 C -0.254 4.254 27 S 0.225 5.775 28 C -0.117 4.117 29 C -0.101 4.101 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.408 0.592 36 H 0.178 0.822 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.269 0.731 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.157 0.843 43 H 0.137 0.863 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.129 -3.135 1.273 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.113 4.113 3 C -0.120 4.120 4 C -0.168 4.168 5 C 0.062 3.938 6 N -0.321 5.321 7 C 0.391 3.609 8 O -0.394 6.394 9 C -0.337 4.337 10 C -0.049 4.049 11 N -0.081 5.081 12 C 0.132 3.868 13 C -0.572 4.572 14 H 0.090 0.910 15 C -0.138 4.138 16 N -0.530 5.530 17 Si 0.736 3.264 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.206 1.206 21 N -0.072 5.072 22 C -0.001 4.001 23 C -0.233 4.233 24 C -0.154 4.154 25 C -0.172 4.172 26 C -0.391 4.391 27 S 0.492 5.508 28 C -0.137 4.137 29 C -0.119 4.119 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.243 0.757 36 H 0.195 0.805 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.175 0.825 43 H 0.155 0.845 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.000 -2.802 2.088 21.289 hybrid contribution 1.451 -0.048 -0.311 1.485 sum -19.549 -2.849 1.777 19.836 Atomic orbital electron populations 1.20733 0.91425 1.02522 1.01993 1.19861 0.95966 0.93207 1.02249 1.20761 0.93288 0.97503 1.00477 1.20889 0.94509 0.96527 1.04893 1.17719 0.82557 0.94024 0.99543 1.43448 1.04436 1.29391 1.54853 1.17396 0.85924 0.80047 0.77527 1.90740 1.69268 1.39357 1.40075 1.20806 0.92382 1.04491 1.15985 1.22922 0.85610 0.98269 0.98132 1.49314 1.06988 1.18962 1.32843 1.20007 0.79395 0.92619 0.94775 1.21218 1.02126 1.40156 0.93732 0.91021 1.24933 0.97780 0.94914 0.96218 1.69914 1.24749 1.41039 1.17304 0.86245 0.80466 0.78083 0.81632 1.19405 1.20520 1.20637 1.77639 1.17964 1.01678 1.09902 1.20634 0.89612 0.93399 0.96433 1.21747 1.02444 0.95301 1.03779 1.20278 1.01786 0.92036 1.01295 1.19881 0.97535 1.00994 0.98769 1.26115 1.03664 1.02302 1.07069 1.84665 1.26817 1.08086 1.31261 1.21203 0.94032 0.97865 1.00577 1.20905 0.93599 0.97488 0.99949 0.91511 0.91751 0.91821 0.86006 0.85787 0.75671 0.80506 0.92897 0.92151 0.92154 0.84375 0.84945 0.82494 0.84518 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.00 0.36 -0.40 16 2 C -0.11 -1.09 5.88 -104.59 -0.62 -1.70 16 3 C -0.10 -0.97 9.69 -39.61 -0.38 -1.35 16 4 C -0.15 -1.54 9.96 -39.39 -0.39 -1.93 16 5 C 0.16 1.92 6.28 -83.71 -0.53 1.40 16 6 N -0.68 -8.38 5.33 -10.90 -0.06 -8.44 16 7 C 0.60 9.37 7.54 -12.63 -0.10 9.27 16 8 O -0.52 -8.84 10.63 5.24 0.06 -8.79 16 9 C -0.32 -5.54 6.32 -102.92 -0.65 -6.19 16 10 C 0.11 1.75 10.88 -16.63 -0.18 1.57 16 11 N -0.31 -6.33 3.62 -62.03 -0.22 -6.56 16 12 C 0.25 5.72 6.21 -5.19 -0.03 5.69 16 13 C -0.53 -13.94 9.20 -34.44 -0.32 -14.26 16 14 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 15 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -23.93 13.29 55.43 0.74 -23.20 16 17 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 N -0.25 -5.49 12.30 34.50 0.42 -5.07 16 22 C 0.17 3.30 7.24 -80.68 -0.58 2.72 16 23 C -0.11 -2.04 6.11 -36.91 -0.23 -2.26 16 24 C -0.12 -1.99 10.10 -40.89 -0.41 -2.40 16 25 C -0.14 -1.96 10.16 -41.31 -0.42 -2.38 16 26 C -0.25 -3.42 11.22 29.12 0.33 -3.10 16 27 S 0.23 3.55 19.79 -107.50 -2.13 1.42 16 28 C -0.12 -1.49 8.65 -39.39 -0.34 -1.83 16 29 C -0.10 -1.09 9.69 -39.61 -0.38 -1.47 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.08 -51.92 -0.42 -0.01 16 32 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.41 3.92 7.78 -40.82 -0.32 3.61 16 36 H 0.18 2.07 7.49 -52.48 -0.39 1.67 16 37 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.33 8.05 -51.93 -0.42 0.91 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.14 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 42 H 0.16 1.65 8.06 -52.48 -0.42 1.22 16 43 H 0.14 1.94 6.42 -52.49 -0.34 1.60 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 393.09 15.07 5.92 5.92 Total: -1.00 -30.64 393.09 -10.49 -41.14 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.23 Total: 5.03 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -4.97 Total: -17.03 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.88 Total: -43.26 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.06 Total: -8.79 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -2.13 Total: 1.42 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.64 -10.49 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004516879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.268 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds