Wall clock time and date at job start Tue Mar 31 2020 05:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00562 * 2 1 4 4 H 1.48498 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47122 * 299.99725 * 3 2 1 6 6 H 1.48505 * 109.47034 * 59.99268 * 3 2 1 7 7 C 1.37876 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00231 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00007 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47269 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.34368 * 123.88138 * 269.96243 * 11 10 9 13 13 O 1.21290 * 126.43855 * 0.02562 * 12 11 10 14 14 C 1.51394 * 107.11362 * 180.02562 * 12 11 10 15 15 O 1.42900 * 110.50945 * 118.64698 * 14 12 11 16 16 C 1.53000 * 110.50752 * 241.35183 * 14 12 11 17 17 C 1.50706 * 109.47361 * 303.54630 * 16 14 12 18 18 O 1.20836 * 119.99580 * 0.02562 * 17 16 14 19 19 C 1.47536 * 120.00394 * 179.97438 * 17 16 14 20 20 C 1.40057 * 120.94917 * 359.72308 * 19 17 16 21 21 C 1.38129 * 118.97119 * 179.70277 * 20 19 17 22 22 N 1.31809 * 120.91745 * 0.58467 * 21 20 19 23 23 C 1.31809 * 122.11790 * 359.71067 * 22 21 20 24 24 C 1.38129 * 120.92036 * 359.97438 * 23 22 21 25 25 C 1.51133 * 104.07061 * 359.97438 * 14 12 11 26 26 C 1.37679 * 132.85414 * 179.97438 * 25 14 12 27 27 C 1.38391 * 119.91620 * 180.02562 * 26 25 14 28 28 C 1.38301 * 119.82502 * 359.97438 * 27 26 25 29 29 C 1.37940 * 120.37678 * 0.24012 * 28 27 26 30 30 C 1.38898 * 106.33968 * 0.02562 * 25 14 12 31 31 H 0.97009 * 119.99830 * 0.02562 * 1 2 3 32 32 H 1.08993 * 109.47671 * 59.99898 * 9 7 2 33 33 H 1.09002 * 109.47081 * 299.99800 * 9 7 2 34 34 H 1.09008 * 109.47068 * 59.99787 * 10 9 7 35 35 H 1.08995 * 109.47286 * 299.99746 * 10 9 7 36 36 H 0.96696 * 114.00254 * 61.44980 * 15 14 12 37 37 H 1.09000 * 109.47328 * 63.54701 * 16 14 12 38 38 H 1.08996 * 109.47182 * 183.54856 * 16 14 12 39 39 H 1.08008 * 120.51154 * 0.02562 * 20 19 17 40 40 H 1.07997 * 119.54030 * 180.29176 * 21 20 19 41 41 H 1.07991 * 119.54030 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.51225 * 180.02562 * 24 23 22 43 43 H 1.08004 * 120.03920 * 359.97438 * 26 25 14 44 44 H 1.08002 * 120.08835 * 179.97438 * 27 26 25 45 45 H 1.08001 * 119.81347 * 180.02562 * 28 27 26 46 46 H 1.08006 * 119.93577 * 179.70696 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 7 1.5124 -4.9308 0.0012 12 6 1.1389 -5.5796 1.1170 13 8 1.3438 -5.2257 2.2589 14 6 0.4141 -6.8352 0.6808 15 8 1.0998 -7.9977 1.1504 16 6 -1.0303 -6.8229 1.1850 17 6 -1.0380 -6.6646 2.6837 18 8 0.0050 -6.5707 3.2866 19 6 -2.3189 -6.6230 3.4146 20 6 -3.5395 -6.7232 2.7352 21 6 -4.7143 -6.6858 3.4608 22 7 -4.6966 -6.5466 4.7714 23 6 -3.5713 -6.4428 5.4500 24 6 -2.3492 -6.4767 4.8072 25 6 0.4481 -6.7734 -0.8289 26 6 -0.0343 -7.6087 -1.8113 27 6 0.1510 -7.2856 -3.1442 28 6 0.8200 -6.1238 -3.4838 29 6 1.3082 -5.2874 -2.5014 30 6 1.1226 -5.6044 -1.1570 31 1 -0.4850 0.8401 -0.0004 32 1 0.6245 -2.5571 -0.8896 33 1 0.6239 -2.5567 0.8903 34 1 2.8717 -3.6044 0.8906 35 1 2.8716 -3.6045 -0.8894 36 1 1.1601 -8.0565 2.1137 37 1 -1.5673 -5.9911 0.7291 38 1 -1.5170 -7.7604 0.9163 39 1 -3.5617 -6.8333 1.6609 40 1 -5.6605 -6.7671 2.9467 41 1 -3.6054 -6.3298 6.5234 42 1 -1.4313 -6.3914 5.3698 43 1 -0.5559 -8.5153 -1.5421 44 1 -0.2259 -7.9390 -3.9171 45 1 0.9641 -5.8717 -4.5240 46 1 1.8337 -4.3843 -2.7747 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004545738.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:10 Heat of formation + Delta-G solvation = -31.420278 kcal Electronic energy + Delta-G solvation = -32953.076105 eV Core-core repulsion = 28580.630332 eV Total energy + Delta-G solvation = -4372.445773 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.87968 -40.58813 -39.19316 -38.11938 -36.63690 -35.74308 -33.62660 -33.22746 -32.32860 -31.58326 -30.63076 -30.17369 -28.73017 -26.64791 -25.18134 -24.16458 -23.50067 -22.42006 -21.66822 -21.33656 -20.40408 -19.73134 -17.99975 -17.60146 -16.98615 -16.79446 -16.36231 -15.97181 -15.89020 -15.74310 -15.69321 -14.93344 -14.84415 -14.52875 -14.40949 -14.22857 -14.07007 -13.96112 -13.94887 -13.58628 -13.32409 -12.85838 -12.78562 -12.63664 -12.42128 -12.33148 -11.96219 -11.86586 -11.59576 -11.19850 -11.03831 -10.92872 -10.81345 -10.36933 -10.27866 -10.15283 -10.11112 -9.72323 -9.54290 -9.47133 -9.40303 -9.13187 -8.93302 -8.47353 -7.65876 -6.11741 -4.16073 0.32301 0.82783 1.15189 1.38087 2.23621 2.65787 3.05512 3.25205 3.33140 3.37109 3.46209 3.57603 3.83104 4.08623 4.13203 4.14602 4.21093 4.37730 4.44829 4.66100 4.70562 4.79967 4.85800 5.01528 5.02078 5.13146 5.24930 5.25082 5.31786 5.38510 5.47696 5.51479 5.60231 5.62894 5.82139 5.82827 5.89719 6.16767 6.24837 6.32469 6.38540 6.51904 6.57850 6.74269 6.90253 7.19524 7.28640 7.40949 7.50354 7.62672 7.63324 7.84713 8.15427 8.27203 8.89639 9.48901 10.99662 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.006974 B = 0.003595 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4013.877042 B = 7786.249123 C =10281.671126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.109 3.891 11 N -0.544 5.544 12 C 0.497 3.503 13 O -0.457 6.457 14 C 0.163 3.837 15 O -0.529 6.529 16 C -0.178 4.178 17 C 0.377 3.623 18 O -0.393 6.393 19 C -0.113 4.113 20 C -0.131 4.131 21 C 0.091 3.909 22 N -0.469 5.469 23 C 0.093 3.907 24 C -0.117 4.117 25 C -0.151 4.151 26 C -0.046 4.046 27 C -0.159 4.159 28 C -0.073 4.073 29 C -0.141 4.141 30 C 0.179 3.821 31 H 0.262 0.738 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.387 0.613 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.145 0.855 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.147 0.853 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.991 -19.226 -1.144 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.010 4.010 11 N -0.265 5.265 12 C 0.282 3.718 13 O -0.328 6.328 14 C 0.119 3.881 15 O -0.337 6.337 16 C -0.215 4.215 17 C 0.250 3.750 18 O -0.263 6.263 19 C -0.122 4.122 20 C -0.151 4.151 21 C -0.065 4.065 22 N -0.179 5.179 23 C -0.064 4.064 24 C -0.137 4.137 25 C -0.154 4.154 26 C -0.065 4.065 27 C -0.178 4.178 28 C -0.091 4.091 29 C -0.162 4.162 30 C 0.081 3.919 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.237 0.763 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.163 0.837 40 H 0.180 0.820 41 H 0.179 0.821 42 H 0.165 0.835 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.147 0.853 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.076 -18.821 -0.217 20.109 hybrid contribution 1.051 1.325 0.029 1.692 sum -6.025 -17.496 -0.188 18.505 Atomic orbital electron populations 1.69978 1.06147 1.26766 1.50071 1.24989 0.94857 0.99384 0.94871 0.86474 0.80108 0.83395 0.77692 1.19581 1.20859 1.20884 1.21056 0.93107 0.90379 1.51748 0.92266 1.19404 0.94205 0.90852 0.97941 1.22178 0.95692 0.80625 1.02506 1.46300 1.52724 1.22982 1.04516 1.21070 0.80038 0.85738 0.84970 1.90845 1.53723 1.69954 1.18263 1.20142 0.90636 0.85895 0.91461 1.86571 1.78356 1.40357 1.28386 1.22592 0.97659 1.06665 0.94622 1.22339 0.87952 0.73890 0.90780 1.90599 1.33228 1.31923 1.70544 1.20952 0.95240 1.01108 0.94862 1.22519 0.92465 0.98289 1.01843 1.22794 0.98220 0.95743 0.89774 1.67536 1.31189 1.09722 1.09467 1.22805 0.87161 0.95747 1.00701 1.22502 1.00640 0.96477 0.94077 1.19326 1.06399 0.97542 0.92163 1.20180 0.97298 0.97575 0.91398 1.20970 1.02964 0.98378 0.95479 1.20920 0.95755 0.93535 0.98926 1.20517 1.04523 1.01951 0.89189 1.18298 0.93835 0.91327 0.88395 0.92865 0.96049 0.96167 0.90268 0.90683 0.76290 0.86451 0.86112 0.83729 0.82043 0.82056 0.83519 0.85648 0.85505 0.85258 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.36 5.30 -27.88 -0.15 0.21 16 10 C 0.11 2.33 5.67 -4.04 -0.02 2.31 16 11 N -0.54 -10.51 2.73 -113.25 -0.31 -10.82 16 12 C 0.50 9.60 6.92 -10.83 -0.07 9.52 16 13 O -0.46 -10.17 14.18 -19.52 -0.28 -10.45 16 14 C 0.16 2.43 1.02 -92.37 -0.09 2.34 16 15 O -0.53 -7.61 13.07 -47.56 -0.62 -8.24 16 16 C -0.18 -2.08 3.79 -27.88 -0.11 -2.19 16 17 C 0.38 5.00 6.64 -30.52 -0.20 4.80 16 18 O -0.39 -6.42 11.16 -23.68 -0.26 -6.68 16 19 C -0.11 -1.31 5.90 -104.74 -0.62 -1.92 16 20 C -0.13 -1.21 9.55 -38.94 -0.37 -1.59 16 21 C 0.09 0.85 11.17 -17.60 -0.20 0.65 16 22 N -0.47 -5.20 10.33 -13.32 -0.14 -5.34 16 23 C 0.09 0.95 11.17 -17.60 -0.20 0.75 16 24 C -0.12 -1.31 9.69 -38.94 -0.38 -1.69 16 25 C -0.15 -2.17 5.35 -104.37 -0.56 -2.73 16 26 C -0.05 -0.52 10.03 -39.73 -0.40 -0.92 16 27 C -0.16 -1.62 10.07 -39.50 -0.40 -2.02 16 28 C -0.07 -0.82 10.01 -39.67 -0.40 -1.22 16 29 C -0.14 -2.03 9.74 -39.27 -0.38 -2.42 16 30 C 0.18 2.96 6.69 -83.69 -0.56 2.40 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.75 7.95 -51.92 -0.41 1.34 16 35 H 0.07 1.45 7.61 -51.93 -0.40 1.06 16 36 H 0.39 5.10 7.23 45.56 0.33 5.43 16 37 H 0.12 1.36 8.11 -51.93 -0.42 0.94 16 38 H 0.12 0.98 8.13 -51.93 -0.42 0.56 16 39 H 0.14 0.93 7.23 -52.48 -0.38 0.55 16 40 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.15 1.59 7.74 -52.49 -0.41 1.18 16 43 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 44 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.13 1.91 7.69 -52.48 -0.40 1.51 16 LS Contribution 393.26 15.07 5.93 5.93 Total: -1.00 -35.75 393.26 -10.50 -46.25 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.01 Total: 5.72 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -5.51 Total: -6.99 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.29 Total: -41.96 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -1.16 Total: -25.36 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.75 -10.50 -46.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004545738.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.829 kcal (2) G-P(sol) polarization free energy of solvation -35.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds