Wall clock time and date at job start Tue Mar 31 2020 05:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 120.00024 * 2 1 4 4 H 1.48504 * 109.46666 * 270.00284 * 3 2 1 5 5 H 1.48498 * 109.46934 * 29.99641 * 3 2 1 6 6 H 1.48493 * 109.47437 * 150.00035 * 3 2 1 7 7 C 1.38698 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99921 * 180.02562 * 7 2 1 9 9 O 1.34779 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.35575 * 116.99827 * 185.10966 * 9 7 2 11 11 C 1.39184 * 119.89038 * 354.43706 * 10 9 7 12 12 C 1.37105 * 120.10718 * 179.97438 * 11 10 9 13 13 C 1.40109 * 119.89193 * 0.02912 * 12 11 10 14 14 C 1.46762 * 120.11189 * 180.02562 * 13 12 11 15 15 C 1.35793 * 120.00206 * 141.58711 * 14 13 12 16 16 S 1.77490 * 127.96842 * 171.97863 * 15 14 13 17 17 C 1.77223 * 94.56884 * 180.26236 * 16 15 14 18 18 O 1.21628 * 126.55138 * 180.02562 * 17 16 15 19 19 N 1.33793 * 106.88916 * 0.02562 * 17 16 15 20 20 C 1.40160 * 120.24316 * 180.02562 * 19 17 16 21 21 C 1.38839 * 120.06534 * 121.56199 * 20 19 17 22 22 C 1.38123 * 119.92920 * 179.79521 * 21 20 19 23 23 C 1.38279 * 120.06923 * 0.48240 * 22 21 20 24 24 C 1.38277 * 120.13058 * 359.74685 * 23 22 21 25 25 C 1.38120 * 120.06878 * 0.02562 * 24 23 22 26 26 C 1.32267 * 119.51480 * 359.97438 * 19 17 16 27 27 O 1.21713 * 122.51511 * 180.02562 * 26 19 17 28 28 C 1.40117 * 119.77826 * 0.26843 * 13 12 11 29 29 C 1.37105 * 119.88546 * 359.40371 * 28 13 12 30 30 H 0.97003 * 120.00169 * 359.97438 * 1 2 3 31 31 H 1.07998 * 119.94959 * 0.02562 * 11 10 9 32 32 H 1.08003 * 120.05333 * 179.97438 * 12 11 10 33 33 H 1.08002 * 120.00202 * 321.58527 * 14 13 12 34 34 H 1.08000 * 120.03565 * 359.97438 * 21 20 19 35 35 H 1.08000 * 119.96145 * 180.21357 * 22 21 20 36 36 H 1.08000 * 119.93405 * 179.77278 * 23 22 21 37 37 H 1.08002 * 119.96678 * 179.97438 * 24 23 22 38 38 H 1.08006 * 120.03368 * 179.97438 * 25 24 23 39 39 H 1.07996 * 120.05455 * 179.70964 * 28 13 12 40 40 H 1.07999 * 119.94025 * 180.34285 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0087 -1.2011 -0.0005 8 1 3.0887 -1.2011 -0.0001 9 8 1.3349 -2.3684 -0.0005 10 6 2.0692 -3.5030 0.1065 11 6 3.4593 -3.4334 0.0931 12 6 4.2063 -4.5779 0.2016 13 6 3.5682 -5.8191 0.3255 14 6 4.3631 -7.0472 0.4425 15 6 3.9591 -8.0407 1.2754 16 16 4.6363 -9.6735 1.4366 17 6 3.4924 -10.1773 2.6931 18 8 3.4496 -11.2625 3.2406 19 7 2.6852 -9.1356 2.9242 20 6 1.6647 -9.2317 3.8801 21 6 1.6294 -8.3488 4.9510 22 6 0.6201 -8.4434 5.8892 23 6 -0.3489 -9.4225 5.7680 24 6 -0.3136 -10.3063 4.7051 25 6 0.6905 -10.2137 3.7612 26 6 2.8579 -8.0141 2.2446 27 8 2.1562 -7.0336 2.4110 28 6 2.1685 -5.8844 0.3322 29 6 1.4305 -4.7335 0.2299 30 1 -0.4850 0.8401 0.0004 31 1 3.9503 -2.4762 -0.0021 32 1 5.2849 -4.5229 0.1906 33 1 5.2693 -7.1609 -0.1339 34 1 2.3887 -7.5870 5.0489 35 1 0.5901 -7.7547 6.7205 36 1 -1.1350 -9.4968 6.5048 37 1 -1.0715 -11.0702 4.6133 38 1 0.7178 -10.9046 2.9315 39 1 1.6720 -6.8392 0.4228 40 1 0.3516 -4.7823 0.2406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004695487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:26 Heat of formation + Delta-G solvation = 15.424663 kcal Electronic energy + Delta-G solvation = -28908.881191 eV Core-core repulsion = 24747.667882 eV Total energy + Delta-G solvation = -4161.213310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 367.071 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.16577 -39.45235 -38.84121 -38.76193 -36.93131 -35.82702 -33.57302 -32.47178 -31.22361 -30.94375 -30.46545 -28.34371 -25.91330 -25.15985 -24.94783 -22.91904 -22.38066 -21.98365 -21.10624 -19.67380 -18.61470 -18.27249 -18.13894 -17.22153 -16.95386 -16.53547 -16.00865 -15.63573 -15.07121 -14.87715 -14.69983 -14.68034 -14.47407 -14.30825 -13.94905 -13.83962 -13.68573 -13.47264 -13.00927 -12.88023 -12.62441 -12.21901 -12.02001 -11.95228 -11.69239 -11.61204 -11.28172 -11.13880 -10.86700 -10.73901 -10.62435 -10.53554 -10.47946 -9.90868 -9.56243 -9.19170 -9.10993 -8.92168 -8.39319 -8.31093 -7.16815 -6.72377 -4.25293 0.31955 0.58918 0.92499 1.14462 1.42901 1.54094 2.19818 2.34309 2.51903 2.87051 2.99636 3.01502 3.05765 3.49263 3.76556 4.12831 4.40527 4.65372 4.67461 4.74722 4.86100 4.88898 5.00815 5.07288 5.14466 5.24546 5.39158 5.49399 5.66958 5.72158 5.75005 5.78313 6.03246 6.05167 6.12329 6.24089 6.28002 6.47496 6.53047 6.62011 6.73634 6.78344 6.84333 7.08792 7.14719 7.22270 7.52028 7.61030 7.73402 8.71701 9.38886 10.43667 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.012375 B = 0.002497 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.144879 B =11208.899626 C =12898.730275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.042 3.958 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.391 4.391 8 H 0.099 0.901 9 O -0.156 6.156 10 C 0.178 3.822 11 C -0.250 4.250 12 C -0.021 4.021 13 C -0.224 4.224 14 C 0.130 3.870 15 C -0.289 4.289 16 S -0.034 6.034 17 C 0.534 3.466 18 O -0.438 6.438 19 N -0.525 5.525 20 C 0.111 3.889 21 C -0.091 4.091 22 C -0.108 4.108 23 C -0.110 4.110 24 C -0.110 4.110 25 C -0.099 4.099 26 C 0.548 3.452 27 O -0.440 6.440 28 C 0.015 3.985 29 C -0.203 4.203 30 H 0.276 0.724 31 H 0.132 0.868 32 H 0.114 0.886 33 H 0.142 0.858 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.443 -16.199 5.649 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.165 4.165 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.466 4.466 8 H 0.117 0.883 9 O -0.056 6.056 10 C 0.120 3.880 11 C -0.269 4.269 12 C -0.039 4.039 13 C -0.227 4.227 14 C 0.105 3.895 15 C -0.404 4.404 16 S 0.204 5.796 17 C 0.215 3.785 18 O -0.312 6.312 19 N -0.267 5.267 20 C 0.020 3.980 21 C -0.110 4.110 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.128 4.128 25 C -0.119 4.119 26 C 0.339 3.661 27 O -0.311 6.311 28 C -0.004 4.004 29 C -0.223 4.223 30 H 0.086 0.914 31 H 0.149 0.851 32 H 0.132 0.868 33 H 0.159 0.841 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.130 0.870 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.586 -16.694 5.433 18.423 hybrid contribution -0.440 1.373 0.601 1.562 sum 5.146 -15.321 6.034 17.251 Atomic orbital electron populations 1.70021 1.06209 1.28479 1.43131 1.25441 0.95926 0.99280 0.95892 0.85625 0.79034 0.79358 0.79006 1.19536 1.19971 1.18863 1.21537 0.92209 0.80515 1.52331 0.88337 1.83903 1.35264 1.11952 1.74443 1.19650 0.90331 0.87685 0.90309 1.20903 0.93577 0.99133 1.13274 1.20719 0.98391 0.91113 0.93725 1.18193 0.93073 0.91501 1.19933 1.21939 0.93692 0.88464 0.85393 1.23049 1.06915 0.99938 1.10510 1.86026 1.40310 1.09434 1.43852 1.22196 0.84277 0.85658 0.86373 1.90899 1.68808 1.20591 1.50869 1.44110 1.30536 1.15117 1.36954 1.17665 0.90133 0.99605 0.90605 1.21108 0.99411 0.98203 0.92328 1.21066 0.94166 0.98509 0.98908 1.21283 0.98630 0.94877 0.98028 1.21013 0.98008 0.99546 0.94277 1.21046 0.93156 0.97818 0.99873 1.17721 0.84895 0.82018 0.81483 1.91026 1.44895 1.30656 1.64567 1.20624 0.91962 0.97015 0.90819 1.19962 0.99840 0.89954 1.12516 0.91428 0.85064 0.86778 0.84076 0.85390 0.85010 0.85343 0.85112 0.85623 0.87014 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.40 13.67 55.48 0.76 -22.64 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.95 19.07 29.55 -169.99 -5.02 14.05 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.39 -10.18 9.48 30.90 0.29 -9.88 16 8 H 0.10 2.33 5.18 -52.48 -0.27 2.06 16 9 O -0.16 -4.19 9.74 0.73 0.01 -4.19 16 10 C 0.18 4.06 6.66 -38.88 -0.26 3.80 16 11 C -0.25 -4.96 9.12 -39.64 -0.36 -5.33 16 12 C -0.02 -0.34 9.77 -39.29 -0.38 -0.72 16 13 C -0.22 -3.61 5.35 -105.05 -0.56 -4.17 16 14 C 0.13 1.65 9.86 -37.01 -0.37 1.28 16 15 C -0.29 -3.85 6.33 -37.03 -0.23 -4.09 16 16 S -0.03 -0.40 23.18 -107.50 -2.49 -2.89 16 17 C 0.53 7.40 8.18 53.62 0.44 7.84 16 18 O -0.44 -6.71 17.21 5.25 0.09 -6.62 16 19 N -0.53 -7.52 2.61 -64.68 -0.17 -7.69 16 20 C 0.11 1.55 4.95 -83.61 -0.41 1.14 16 21 C -0.09 -1.19 9.01 -39.40 -0.35 -1.54 16 22 C -0.11 -1.15 10.04 -39.61 -0.40 -1.55 16 23 C -0.11 -1.05 10.04 -39.55 -0.40 -1.44 16 24 C -0.11 -1.10 10.04 -39.61 -0.40 -1.50 16 25 C -0.10 -1.22 9.20 -39.40 -0.36 -1.58 16 26 C 0.55 8.39 6.78 -13.94 -0.09 8.30 16 27 O -0.44 -7.91 12.23 5.18 0.06 -7.84 16 28 C 0.01 0.26 6.90 -39.29 -0.27 -0.01 16 29 C -0.20 -4.24 9.95 -39.64 -0.39 -4.63 16 30 H 0.28 6.94 8.31 -40.82 -0.34 6.61 16 31 H 0.13 2.56 5.62 -52.49 -0.29 2.27 16 32 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.11 1.93 6.25 -52.49 -0.33 1.60 16 40 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 366.49 15.07 5.52 5.52 Total: -1.00 -30.38 366.49 -9.27 -39.65 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.41 Total: 5.75 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -4.61 Total: -13.11 kcal Atomic # 7 Polarization: -30.92 SS G_CDS: 0.59 Total: -30.33 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.16 Total: -18.65 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -2.49 Total: -2.89 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.38 -9.27 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004695487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.077 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds