Wall clock time and date at job start Tue Mar 31 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35930 * 116.99786 * 2 1 4 4 C 1.38704 * 120.05851 * 359.72087 * 3 2 1 5 5 C 1.38148 * 119.95523 * 180.29613 * 4 3 2 6 6 C 1.38282 * 120.07778 * 359.95972 * 5 4 3 7 7 S 1.76202 * 119.94016 * 180.02562 * 6 5 4 8 8 O 1.42097 * 106.40141 * 18.03432 * 7 6 5 9 9 O 1.42101 * 106.40380 * 150.95578 * 7 6 5 10 10 N 1.65603 * 107.21803 * 264.49888 * 7 6 5 11 11 C 1.38856 * 120.00275 * 62.85804 * 10 7 6 12 12 C 1.39566 * 119.84307 * 253.80051 * 11 10 7 13 13 C 1.36340 * 120.15743 * 179.71542 * 12 11 10 14 14 C 1.40878 * 119.83792 * 0.55778 * 13 12 11 15 15 C 1.41139 * 120.16047 * 179.69757 * 14 13 12 16 16 H 1.07992 * 120.00614 * 205.14206 * 15 14 13 17 17 C 1.39869 * 119.99324 * 25.14242 * 15 14 13 18 18 N 1.30896 * 120.00617 * 15.23640 * 17 15 14 19 19 Si 1.86807 * 119.99736 * 195.23324 * 17 15 14 20 20 H 1.48502 * 109.47168 * 59.99851 * 19 17 15 21 21 H 1.48490 * 109.47100 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46907 * 299.99961 * 19 17 15 23 23 C 1.40890 * 119.69111 * 359.71388 * 14 13 12 24 24 C 1.36338 * 119.83199 * 0.02562 * 23 14 13 25 25 C 1.38246 * 120.12009 * 0.04179 * 6 5 4 26 26 C 1.38260 * 120.03889 * 359.97438 * 25 6 5 27 27 Cl 1.73595 * 120.03431 * 179.97438 * 26 25 6 28 28 H 1.08996 * 109.47365 * 60.00617 * 1 2 3 29 29 H 1.09001 * 109.46727 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47528 * 299.99920 * 1 2 3 31 31 H 1.08002 * 120.02293 * 0.27919 * 4 3 2 32 32 H 1.08005 * 119.96184 * 179.97438 * 5 4 3 33 33 H 0.96997 * 119.99641 * 242.86367 * 10 7 6 34 34 H 1.08000 * 119.92122 * 359.97438 * 12 11 10 35 35 H 1.08000 * 120.07835 * 180.26880 * 13 12 11 36 36 H 0.96994 * 120.00482 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.08582 * 179.97438 * 23 14 13 38 38 H 1.08010 * 119.91711 * 179.97438 * 24 23 14 39 39 H 1.07996 * 119.97780 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2112 0.0000 4 6 1.2918 2.3752 -0.0058 5 6 1.9211 3.6050 -0.0120 6 6 3.3021 3.6768 -0.0115 7 16 4.1010 5.2472 -0.0187 8 8 3.1274 6.1946 0.3980 9 8 5.3448 5.0678 0.6447 10 7 4.4594 5.6077 -1.5948 11 6 3.4368 5.7664 -2.5206 12 6 3.2021 4.7737 -3.4732 13 6 2.1959 4.9203 -4.3816 14 6 1.4000 6.0825 -4.3645 15 6 0.3607 6.2442 -5.3057 16 1 0.0255 7.2347 -5.5753 17 6 -0.2350 5.1213 -5.8893 18 7 -0.0535 3.9364 -5.3635 19 14 -1.2899 5.3126 -7.4191 20 1 -0.4731 5.8952 -8.5139 21 1 -1.8020 3.9829 -7.8366 22 1 -2.4337 6.2121 -7.1222 23 6 1.6463 7.0830 -3.4036 24 6 2.6524 6.9205 -2.4979 25 6 4.0570 2.5186 -0.0057 26 6 3.4322 1.2852 0.0001 27 17 4.3802 -0.1690 0.0067 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2131 2.3202 -0.0059 32 1 1.3339 4.5114 -0.0170 33 1 5.3838 5.7078 -1.8713 34 1 3.8162 3.8855 -3.4882 35 1 2.0127 4.1494 -5.1154 36 1 -0.4663 3.1577 -5.7685 37 1 1.0403 7.9767 -3.3849 38 1 2.8428 7.6869 -1.7610 39 1 5.1353 2.5774 -0.0058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004756967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:49 Heat of formation + Delta-G solvation = -87.449049 kcal Electronic energy + Delta-G solvation = -28325.223347 eV Core-core repulsion = 24157.116249 eV Total energy + Delta-G solvation = -4168.107098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 367.048 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39603 -39.75675 -38.74726 -38.26302 -37.52875 -36.93891 -36.47585 -34.54395 -32.17919 -31.67191 -31.38402 -30.51248 -28.41477 -26.54257 -24.22704 -23.87719 -22.94394 -22.55537 -20.60572 -19.68137 -19.26008 -18.81136 -18.60958 -17.97911 -17.67040 -17.09301 -16.95666 -16.27142 -16.08538 -15.73050 -15.49396 -15.24412 -15.15099 -14.58779 -14.48502 -14.39873 -14.02575 -13.84550 -13.31992 -13.25763 -13.21346 -13.14850 -13.04266 -12.85951 -12.76960 -12.54770 -12.48429 -12.38988 -12.35368 -12.25444 -11.87403 -11.64943 -11.52769 -11.02886 -10.58155 -10.20175 -9.68997 -9.46073 -9.17034 -8.65254 -6.34342 -0.67292 -0.32559 -0.08757 0.87315 0.95958 1.21059 1.42215 1.51326 1.54452 1.93557 1.98187 2.21144 2.25804 2.69617 2.74753 3.32162 3.56050 3.62911 3.71442 3.95330 4.20935 4.26127 4.32085 4.40746 4.47278 4.48441 4.55493 4.67591 4.69928 4.82509 4.88912 5.09887 5.15549 5.28173 5.31264 5.41511 5.69118 5.82397 5.98615 6.09485 6.16616 6.29808 6.42175 6.68278 6.91522 7.03056 8.28725 Molecular weight = 367.05amu Principal moments of inertia in cm(-1) A = 0.008685 B = 0.003935 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3223.210505 B = 7113.090855 C = 9258.572573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.310 6.310 3 C 0.188 3.812 4 C -0.215 4.215 5 C 0.024 3.976 6 C -0.701 4.701 7 S 2.704 3.296 8 O -0.979 6.979 9 O -0.983 6.983 10 N -1.026 6.026 11 C -0.016 4.016 12 C -0.081 4.081 13 C -0.183 4.183 14 C 0.093 3.907 15 C -0.484 4.484 16 H 0.080 0.920 17 C 0.039 3.961 18 N -0.812 5.812 19 Si 0.979 3.021 20 H -0.261 1.261 21 H -0.268 1.268 22 H -0.260 1.260 23 C -0.236 4.236 24 C -0.070 4.070 25 C 0.021 3.979 26 C -0.105 4.105 27 Cl -0.046 7.046 28 H 0.064 0.936 29 H 0.130 0.870 30 H 0.076 0.924 31 H 0.169 0.831 32 H 0.147 0.853 33 H 0.423 0.577 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.290 0.710 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.482 -8.120 7.307 11.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.222 6.222 3 C 0.140 3.860 4 C -0.234 4.234 5 C 0.005 3.995 6 C -0.789 4.789 7 S 2.797 3.203 8 O -0.969 6.969 9 O -0.974 6.974 10 N -0.782 5.782 11 C -0.112 4.112 12 C -0.102 4.102 13 C -0.203 4.203 14 C 0.090 3.910 15 C -0.512 4.512 16 H 0.098 0.902 17 C -0.177 4.177 18 N -0.437 5.437 19 Si 0.800 3.200 20 H -0.186 1.186 21 H -0.193 1.193 22 H -0.185 1.185 23 C -0.256 4.256 24 C -0.091 4.091 25 C 0.002 3.998 26 C -0.133 4.133 27 Cl -0.017 7.017 28 H 0.082 0.918 29 H 0.148 0.852 30 H 0.095 0.905 31 H 0.186 0.814 32 H 0.165 0.835 33 H 0.262 0.738 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.620 -8.236 8.144 11.695 hybrid contribution -0.578 -0.548 -1.098 1.357 sum 1.043 -8.784 7.046 11.309 Atomic orbital electron populations 1.23566 0.75292 1.06547 1.02925 1.86164 1.24358 1.25059 1.86630 1.19035 0.90703 0.85892 0.90403 1.21566 1.02058 0.90790 1.09017 1.20975 0.92496 0.99224 0.86818 1.30679 1.05262 1.20709 1.22285 1.01761 0.72546 0.73554 0.72466 1.93531 1.62995 1.59491 1.80849 1.93525 1.43576 1.87146 1.73114 1.52074 1.14143 1.85837 1.26161 1.16526 0.97891 0.97324 0.99485 1.20791 0.97085 0.97098 0.95239 1.20965 0.97019 1.00403 1.01924 1.18022 0.91058 0.91609 0.90284 1.19888 1.15978 0.94573 1.20805 0.90199 1.26703 0.97115 0.93994 0.99927 1.69863 1.36261 1.00574 1.37008 0.85286 0.78420 0.78752 0.77548 1.18567 1.19276 1.18458 1.20815 1.03188 1.02035 0.99556 1.20803 0.95306 0.95620 0.97402 1.20740 1.01049 0.88494 0.89550 1.20263 0.89371 0.89274 1.14392 1.98354 1.71148 1.34987 1.97241 0.91761 0.85171 0.90517 0.81393 0.83536 0.73803 0.87232 0.87353 0.89924 0.87949 0.86995 0.81639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.31 -7.40 9.96 -92.76 -0.92 -8.32 16 3 C 0.19 5.14 6.68 22.52 0.15 5.29 16 4 C -0.21 -5.81 9.04 22.36 0.20 -5.60 16 5 C 0.02 0.75 9.52 22.26 0.21 0.97 16 6 C -0.70 -21.81 5.85 22.28 0.13 -21.67 16 7 S 2.70 88.18 5.70 -56.49 -0.32 87.86 16 8 O -0.98 -37.06 16.08 -128.00 -2.06 -39.12 16 9 O -0.98 -33.33 17.43 -128.00 -2.23 -35.56 16 10 N -1.03 -32.80 5.65 -51.07 -0.29 -33.09 16 11 C -0.02 -0.63 5.80 38.67 0.22 -0.40 16 12 C -0.08 -3.37 9.90 22.15 0.22 -3.15 16 13 C -0.18 -8.74 8.63 22.47 0.19 -8.55 16 14 C 0.09 4.64 5.58 -21.27 -0.12 4.52 16 15 C -0.48 -23.99 9.04 23.38 0.21 -23.77 16 16 H 0.08 3.82 7.89 -2.91 -0.02 3.79 16 17 C 0.04 1.81 5.19 85.23 0.44 2.25 16 18 N -0.81 -38.58 10.83 21.82 0.24 -38.34 16 19 Si 0.98 35.10 29.59 68.60 2.03 37.13 16 20 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 21 H -0.27 -9.12 7.11 99.48 0.71 -8.42 16 22 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 23 C -0.24 -10.84 9.74 22.48 0.22 -10.62 16 24 C -0.07 -2.96 9.18 22.15 0.20 -2.75 16 25 C 0.02 0.61 9.30 22.28 0.21 0.82 16 26 C -0.10 -2.96 6.33 22.41 0.14 -2.81 16 27 Cl -0.05 -1.17 28.50 -2.72 -0.08 -1.25 16 28 H 0.06 1.04 7.65 -2.39 -0.02 1.02 16 29 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 0.95 7.67 -2.39 -0.02 0.94 16 31 H 0.17 3.59 6.30 -2.91 -0.02 3.57 16 32 H 0.15 4.60 7.50 -2.91 -0.02 4.57 16 33 H 0.42 11.04 8.95 -96.75 -0.87 10.18 16 34 H 0.11 4.09 8.06 -2.91 -0.02 4.07 16 35 H 0.11 5.44 6.09 -2.91 -0.02 5.42 16 36 H 0.29 12.47 8.30 -92.71 -0.77 11.70 16 37 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 38 H 0.11 4.41 7.84 -2.91 -0.02 4.39 16 39 H 0.17 4.09 7.74 -2.91 -0.02 4.06 16 Total: -1.00 -61.17 364.86 0.37 -60.80 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: 0.26 Total: 34.13 kcal Atomic # 6 Polarization: -67.98 SS G_CDS: 3.75 Total: -64.23 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -0.05 Total: -71.43 kcal Atomic # 8 Polarization: -77.79 SS G_CDS: -5.21 Total: -83.00 kcal Atomic # 14 Polarization: 35.10 SS G_CDS: 2.03 Total: 37.13 kcal Atomic # 16 Polarization: 88.18 SS G_CDS: -0.32 Total: 87.86 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -61.17 0.37 -60.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004756967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.652 kcal (2) G-P(sol) polarization free energy of solvation -61.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds