Wall clock time and date at job start Tue Mar 31 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35943 * 116.99945 * 2 1 4 4 C 1.38748 * 119.98556 * 180.02562 * 3 2 1 5 5 C 1.38067 * 120.00719 * 180.02562 * 4 3 2 6 6 C 1.38824 * 119.99292 * 0.02562 * 5 4 3 7 7 N 1.40340 * 120.01318 * 179.97438 * 6 5 4 8 8 C 1.36656 * 127.15422 * 114.99681 * 7 6 5 9 9 C 1.50706 * 126.32616 * 359.97438 * 8 7 6 10 10 C 1.50703 * 109.46982 * 269.71986 * 9 8 7 11 11 C 1.38234 * 120.00257 * 90.00130 * 10 9 8 12 12 C 1.38238 * 119.99675 * 180.27927 * 11 10 9 13 13 C 1.38228 * 120.00120 * 359.47825 * 12 11 10 14 14 C 1.38234 * 120.00000 * 0.52176 * 13 12 11 15 15 C 1.38234 * 119.99503 * 270.01730 * 10 9 8 16 16 N 1.30517 * 107.35200 * 179.74177 * 8 7 6 17 17 N 1.28524 * 110.11894 * 0.25707 * 16 8 7 18 18 C 1.31443 * 109.84227 * 0.02562 * 17 16 8 19 19 S 1.76196 * 126.50552 * 179.97438 * 18 17 16 20 20 C 1.76209 * 99.99845 * 0.02562 * 19 18 17 21 21 H 1.07994 * 119.99913 * 359.97438 * 20 19 18 22 22 C 1.38669 * 119.99454 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00715 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99470 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47418 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47164 * 120.00286 * 24 22 20 27 27 H 1.48495 * 109.47399 * 239.99854 * 24 22 20 28 28 C 1.38821 * 119.98016 * 0.24716 * 6 5 4 29 29 C 1.38080 * 119.98599 * 359.48011 * 28 6 5 30 30 H 1.08991 * 109.47452 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46846 * 300.00370 * 1 2 3 32 32 H 1.08999 * 109.46834 * 59.99484 * 1 2 3 33 33 H 1.07993 * 119.99337 * 359.97438 * 4 3 2 34 34 H 1.07995 * 120.00736 * 180.02562 * 5 4 3 35 35 H 1.08988 * 109.47229 * 149.71441 * 9 8 7 36 36 H 1.09000 * 109.46558 * 29.71422 * 9 8 7 37 37 H 1.08002 * 119.99744 * 359.97438 * 11 10 9 38 38 H 1.08004 * 119.99577 * 179.72816 * 12 11 10 39 39 H 1.07999 * 119.99932 * 180.24104 * 13 12 11 40 40 H 1.08001 * 120.00310 * 179.72161 * 14 13 12 41 41 H 1.07997 * 120.00460 * 0.02562 * 15 10 9 42 42 H 0.97003 * 120.00390 * 179.97438 * 23 22 20 43 43 H 1.07994 * 120.00893 * 179.74221 * 28 6 5 44 44 H 1.08002 * 119.99268 * 180.27308 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4318 1.2835 -0.0005 5 6 4.0591 2.5135 0.0000 6 6 3.3033 3.6780 0.0016 7 7 3.9404 4.9284 0.0027 8 6 3.9046 5.8738 -0.9834 9 6 3.1659 5.7704 -2.2929 10 6 4.0695 5.1586 -3.3324 11 6 4.0961 3.7873 -3.5043 12 6 4.9293 3.2259 -4.4538 13 6 5.7277 4.0364 -5.2388 14 6 5.7011 5.4078 -5.0669 15 6 4.8719 5.9689 -4.1137 16 7 4.6243 6.8850 -0.5795 17 7 5.1134 6.6427 0.5841 18 6 4.7301 5.4529 0.9903 19 16 5.1470 4.6826 2.5191 20 6 6.1523 5.9419 3.2321 21 1 6.3301 6.8607 2.6931 22 6 6.7160 5.7527 4.4848 23 7 6.4998 4.6327 5.1416 24 14 7.7824 7.0875 5.2403 25 1 7.8686 8.2395 4.3073 26 1 7.1819 7.5339 6.5231 27 1 9.1438 6.5504 5.4916 28 6 1.9170 3.6052 0.0079 29 6 1.2905 2.3747 0.0016 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 4.0197 0.3776 -0.0005 34 1 5.1376 2.5698 -0.0008 35 1 2.8603 6.7650 -2.6172 36 1 2.2838 5.1432 -2.1638 37 1 3.4697 3.1542 -2.8934 38 1 4.9533 2.1541 -4.5851 39 1 6.3757 3.5980 -5.9833 40 1 6.3282 6.0409 -5.6771 41 1 4.8516 7.0403 -3.9790 42 1 6.8944 4.5002 6.0178 43 1 1.3286 4.5107 0.0133 44 1 0.2120 2.3180 0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004959851.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:37 Heat of formation + Delta-G solvation = 89.572472 kcal Electronic energy + Delta-G solvation = -29781.246069 eV Core-core repulsion = 25791.373895 eV Total energy + Delta-G solvation = -3989.872174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.26768 -40.21370 -39.18253 -37.78249 -34.11061 -33.43528 -32.63597 -31.34010 -30.88868 -29.83323 -29.21521 -27.38311 -26.73456 -25.54613 -23.25534 -22.98832 -22.57599 -21.70282 -21.43754 -20.16856 -18.53634 -18.21998 -17.17092 -16.78654 -16.55215 -15.95246 -15.57196 -15.41473 -15.00127 -14.91827 -14.89712 -14.67159 -14.28994 -13.90935 -13.58624 -13.44296 -13.14758 -13.14620 -13.04298 -12.86375 -12.39482 -12.23290 -12.18103 -11.46462 -11.37702 -11.23853 -11.15642 -11.12955 -11.02409 -10.98636 -10.64079 -10.17261 -9.96681 -9.82780 -9.57016 -9.19216 -8.91472 -8.88184 -8.80144 -8.69891 -8.22099 -6.75122 -6.45077 -4.18890 1.06250 1.16163 1.30069 1.40999 2.34700 2.47080 3.02773 3.19124 3.24643 3.29773 3.37900 3.51702 3.56125 3.78983 4.03789 4.57347 4.67938 4.73892 4.80322 4.81104 4.85570 4.89896 4.98709 4.98811 5.08136 5.08434 5.11597 5.16363 5.20859 5.28436 5.45671 5.47536 5.60565 5.64656 5.81142 5.82999 5.97435 6.02433 6.08136 6.15562 6.20440 6.43635 6.44458 6.47950 6.49717 6.64321 6.73128 6.98987 7.12512 7.55389 7.59321 8.39814 9.07082 9.45953 10.63108 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.007179 B = 0.003850 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3899.556193 B = 7271.253777 C =10095.427224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.134 3.866 4 C -0.135 4.135 5 C -0.055 4.055 6 C 0.096 3.904 7 N -0.432 5.432 8 C 0.153 3.847 9 C 0.016 3.984 10 C -0.077 4.077 11 C -0.109 4.109 12 C -0.121 4.121 13 C -0.123 4.123 14 C -0.121 4.121 15 C -0.101 4.101 16 N -0.282 5.282 17 N -0.306 5.306 18 C 0.176 3.824 19 S 0.141 5.859 20 C -0.533 4.533 21 H 0.105 0.895 22 C 0.076 3.924 23 N -0.878 5.878 24 Si 0.930 3.070 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.278 1.278 28 C -0.068 4.068 29 C -0.197 4.197 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.273 0.727 43 H 0.131 0.869 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.737 -9.008 -16.732 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.088 3.912 4 C -0.154 4.154 5 C -0.075 4.075 6 C 0.004 3.996 7 N -0.126 5.126 8 C -0.117 4.117 9 C -0.024 4.024 10 C -0.079 4.079 11 C -0.127 4.127 12 C -0.139 4.139 13 C -0.141 4.141 14 C -0.139 4.139 15 C -0.119 4.119 16 N -0.121 5.121 17 N -0.150 5.150 18 C -0.193 4.193 19 S 0.374 5.626 20 C -0.682 4.682 21 H 0.123 0.877 22 C -0.133 4.133 23 N -0.513 5.513 24 Si 0.755 3.245 25 H -0.188 1.188 26 H -0.204 1.204 27 H -0.204 1.204 28 C -0.088 4.088 29 C -0.216 4.216 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.144 0.856 42 H 0.083 0.917 43 H 0.149 0.851 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.191 -8.941 -16.045 21.509 hybrid contribution 0.167 0.803 0.179 0.840 sum -11.024 -8.138 -15.866 20.964 Atomic orbital electron populations 1.23086 0.78311 1.04012 1.01520 1.86096 1.21452 1.26704 1.88515 1.19063 0.92292 0.84166 0.95664 1.20283 0.91277 0.98165 1.05722 1.21050 1.00851 0.90165 0.95445 1.17400 0.91166 0.83340 1.07652 1.43600 1.40170 1.13755 1.15116 1.24400 1.05596 0.88072 0.93596 1.18806 0.94896 1.02854 0.85815 1.19682 0.98227 0.93668 0.96291 1.21036 0.99325 0.94240 0.98080 1.21086 0.96809 0.99664 0.96345 1.21131 0.99341 0.93891 0.99759 1.21134 0.99033 0.95136 0.98629 1.21106 0.95499 1.00171 0.95126 1.73888 1.09824 1.21614 1.06757 1.74778 1.23130 1.11896 1.05217 1.28575 0.95814 0.95587 0.99340 1.83590 1.58095 1.21555 0.99390 1.23273 1.34296 1.05219 1.05408 0.87696 1.25056 0.95957 0.96786 0.95507 1.69957 1.42886 1.24387 1.14053 0.85905 0.79055 0.80722 0.78783 1.18822 1.20381 1.20363 1.20913 0.92565 0.98069 0.97237 1.21041 1.00181 0.91387 1.09040 0.88210 0.92403 0.92575 0.84182 0.84287 0.87935 0.89680 0.86413 0.86214 0.86329 0.86122 0.85622 0.91719 0.85133 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.30 10.50 -19.56 -0.21 -3.51 16 3 C 0.13 1.56 6.69 -39.21 -0.26 1.30 16 4 C -0.14 -1.70 9.98 -39.46 -0.39 -2.09 16 5 C -0.06 -0.82 9.91 -39.43 -0.39 -1.21 16 6 C 0.10 1.52 5.28 -83.53 -0.44 1.08 16 7 N -0.43 -8.32 2.84 -57.57 -0.16 -8.49 16 8 C 0.15 2.82 7.24 -153.91 -1.11 1.71 16 9 C 0.02 0.21 5.70 -29.03 -0.17 0.05 16 10 C -0.08 -1.03 5.12 -104.62 -0.54 -1.56 16 11 C -0.11 -1.35 9.70 -39.58 -0.38 -1.73 16 12 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 13 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 14 C -0.12 -1.40 10.05 -39.58 -0.40 -1.79 16 15 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 16 N -0.28 -6.33 12.18 33.01 0.40 -5.92 16 17 N -0.31 -7.81 11.04 30.77 0.34 -7.47 16 18 C 0.18 4.18 7.99 -87.87 -0.70 3.48 16 19 S 0.14 3.60 21.57 -107.50 -2.32 1.28 16 20 C -0.53 -15.17 9.37 30.89 0.29 -14.88 16 21 H 0.11 3.10 6.93 -52.49 -0.36 2.73 16 22 C 0.08 2.10 5.49 -17.48 -0.10 2.00 16 23 N -0.88 -24.74 13.22 55.48 0.73 -24.01 16 24 Si 0.93 21.55 29.55 -169.99 -5.02 16.53 16 25 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 C -0.07 -0.89 9.05 -39.42 -0.36 -1.24 16 29 C -0.20 -2.14 9.03 -39.46 -0.36 -2.50 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 32 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 33 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 34 H 0.14 2.19 8.06 -52.49 -0.42 1.76 16 35 H 0.10 1.22 8.08 -51.94 -0.42 0.80 16 36 H 0.08 0.97 7.07 -51.93 -0.37 0.60 16 37 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 38 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.14 1.08 6.29 -52.49 -0.33 0.75 16 LS Contribution 397.04 15.07 5.98 5.98 Total: -1.00 -33.94 397.04 -10.96 -44.90 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.22 Total: 2.13 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -5.49 Total: -21.43 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 1.31 Total: -45.89 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: -0.21 Total: -3.51 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -2.32 Total: 1.28 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.94 -10.96 -44.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004959851.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.475 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds