Wall clock time and date at job start Tue Mar 31 2020 05:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38281 * 119.92826 * 2 1 4 4 C 1.38110 * 120.06855 * 179.97438 * 3 2 1 5 5 C 1.38856 * 119.93312 * 0.02562 * 4 3 2 6 6 N 1.40077 * 120.07028 * 179.97438 * 5 4 3 7 7 C 1.36769 * 119.74704 * 90.12707 * 6 5 4 8 8 S 1.76197 * 118.48089 * 359.97438 * 7 6 5 9 9 C 1.80999 * 99.99844 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47192 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47202 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99907 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00095 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00415 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99828 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47113 * 90.00189 * 15 13 11 17 17 H 1.48502 * 109.47051 * 210.00058 * 15 13 11 18 18 H 1.48498 * 109.47229 * 329.99902 * 15 13 11 19 19 N 1.31021 * 123.03350 * 180.02562 * 7 6 5 20 20 C 1.35343 * 121.52393 * 0.02562 * 19 7 6 21 21 C 1.39805 * 121.62319 * 179.97438 * 20 19 7 22 22 C 1.36625 * 119.66333 * 180.02562 * 21 20 19 23 23 C 1.38914 * 120.97221 * 359.97438 * 22 21 20 24 24 C 1.36752 * 120.73460 * 0.02562 * 23 22 21 25 25 C 1.39433 * 119.51568 * 359.97438 * 24 23 22 26 26 C 1.35322 * 119.74561 * 270.15051 * 6 5 4 27 27 O 1.21738 * 121.21568 * 359.97438 * 26 6 5 28 28 C 1.38855 * 119.85829 * 0.27071 * 5 4 3 29 29 C 1.38117 * 119.93102 * 359.44930 * 28 5 4 30 30 H 1.08991 * 109.47401 * 89.99818 * 1 2 3 31 31 H 1.08998 * 109.46648 * 209.99458 * 1 2 3 32 32 H 1.09001 * 109.47087 * 329.99599 * 1 2 3 33 33 H 1.08004 * 119.96540 * 0.02562 * 3 2 1 34 34 H 1.08004 * 120.03576 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.47445 * 300.00037 * 9 8 7 36 36 H 1.09007 * 109.47009 * 60.00304 * 9 8 7 37 37 H 1.08998 * 109.47508 * 300.00188 * 10 9 8 38 38 H 1.09000 * 109.47101 * 60.00148 * 10 9 8 39 39 H 0.96990 * 120.00394 * 180.02562 * 14 13 11 40 40 H 1.08006 * 120.16486 * 0.05098 * 21 20 19 41 41 H 1.08001 * 119.52062 * 180.27756 * 22 21 20 42 42 H 1.08001 * 119.63265 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.24111 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.03276 * 179.72712 * 28 5 4 45 45 H 1.08001 * 119.96195 * 180.27962 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.2739 0.0002 0.0005 6 7 5.6747 0.0002 0.0005 7 6 6.3533 -0.0024 1.1880 8 16 5.4255 -0.0050 2.6859 9 6 6.7754 -0.0087 3.8916 10 6 6.1949 -0.0108 5.3072 11 6 7.3189 -0.0132 6.3111 12 1 8.3446 -0.0128 5.9733 13 6 7.0376 -0.0159 7.6609 14 7 8.0184 -0.0175 8.5370 15 14 5.2633 -0.0158 8.2453 16 1 4.7921 -1.4159 8.3971 17 1 5.1730 0.6815 9.5533 18 1 4.4144 0.6870 7.2500 19 7 7.6613 -0.0020 1.2631 20 6 8.4339 0.0016 0.1519 21 6 9.8298 0.0026 0.2296 22 6 10.5709 0.0067 -0.9182 23 6 9.9581 0.0095 -2.1648 24 6 8.5949 0.0087 -2.2735 25 6 7.8138 0.0044 -1.1185 26 6 6.3461 0.0034 -1.1744 27 8 5.7551 0.0057 -2.2387 28 6 3.5782 -1.2015 -0.0057 29 6 2.1970 -1.1983 -0.0004 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6552 2.1328 0.0004 34 1 4.1164 2.1381 0.0010 35 1 7.3881 -0.8988 3.7485 36 1 7.3893 0.8813 3.7525 37 1 5.5825 0.8795 5.4502 38 1 5.5808 -0.9004 5.4468 39 1 7.8206 -0.0198 9.4865 40 1 10.3198 -0.0004 1.1921 41 1 11.6491 0.0029 -0.8554 42 1 10.5650 0.0124 -3.0582 43 1 8.1269 0.0113 -3.2467 44 1 4.1166 -2.1378 -0.0102 45 1 1.6554 -2.1327 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004975272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:49 Heat of formation + Delta-G solvation = 39.983324 kcal Electronic energy + Delta-G solvation = -29251.166358 eV Core-core repulsion = 25324.569748 eV Total energy + Delta-G solvation = -3926.596609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.114 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.90156 -39.68399 -38.38201 -37.49139 -34.86727 -33.80529 -32.10027 -31.36004 -31.27677 -31.27015 -30.15830 -27.08292 -25.74529 -25.07228 -24.35693 -23.07680 -22.07822 -21.69202 -21.01265 -19.19389 -18.95114 -18.39861 -17.07058 -16.61341 -16.19147 -16.07439 -15.62227 -15.11532 -15.07473 -14.72154 -14.44630 -14.26692 -14.17789 -14.01987 -13.97253 -13.74096 -13.49769 -13.39310 -12.83005 -12.81748 -12.38390 -12.33213 -12.18743 -12.05748 -11.85779 -11.75736 -11.42214 -11.24422 -10.73160 -10.46013 -10.30907 -10.25904 -10.17057 -10.05541 -9.79381 -9.34037 -9.31000 -9.21137 -8.84487 -8.68262 -8.65253 -7.54873 -6.15389 -4.16233 0.32953 0.71368 0.85981 1.11345 1.15012 2.04523 2.20174 2.60152 2.61947 3.24150 3.32312 3.34332 3.37385 3.85021 4.14879 4.23034 4.35015 4.56531 4.59249 4.63126 4.69810 4.78165 5.04881 5.07688 5.10162 5.12171 5.17530 5.21997 5.32948 5.41675 5.43884 5.63831 5.75375 5.82084 5.83084 5.90207 5.92769 5.95443 6.07487 6.14387 6.16451 6.27272 6.30313 6.39588 6.45132 6.62754 6.69681 6.96667 7.07269 7.56450 7.57137 7.63999 8.37749 8.87594 9.44026 10.97194 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.006685 B = 0.003796 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4187.603664 B = 7374.815584 C =11246.070743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.069 4.069 3 C -0.112 4.112 4 C -0.083 4.083 5 C 0.097 3.903 6 N -0.489 5.489 7 C 0.379 3.621 8 S -0.023 6.023 9 C -0.071 4.071 10 C 0.000 4.000 11 C -0.519 4.519 12 H 0.078 0.922 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.876 3.124 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.264 1.264 19 N -0.525 5.525 20 C 0.178 3.822 21 C -0.113 4.113 22 C -0.070 4.070 23 C -0.150 4.150 24 C -0.038 4.038 25 C -0.209 4.209 26 C 0.556 3.444 27 O -0.505 6.505 28 C -0.083 4.083 29 C -0.112 4.112 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.027 0.973 38 H 0.022 0.978 39 H 0.266 0.734 40 H 0.142 0.858 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.127 0.873 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.520 0.065 -21.250 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.069 4.069 3 C -0.130 4.130 4 C -0.102 4.102 5 C 0.007 3.993 6 N -0.211 5.211 7 C 0.007 3.993 8 S 0.215 5.785 9 C -0.219 4.219 10 C -0.040 4.040 11 C -0.559 4.559 12 H 0.096 0.904 13 C -0.130 4.130 14 N -0.534 5.534 15 Si 0.703 3.297 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.189 1.189 19 N -0.251 5.251 20 C 0.063 3.937 21 C -0.134 4.134 22 C -0.089 4.089 23 C -0.169 4.169 24 C -0.057 4.057 25 C -0.217 4.217 26 C 0.350 3.650 27 O -0.379 6.379 28 C -0.102 4.102 29 C -0.130 4.130 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.045 0.955 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.160 0.840 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.145 0.855 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.540 0.069 -20.847 22.528 hybrid contribution 0.358 -0.020 -0.502 0.617 sum -8.182 0.049 -21.348 22.863 Atomic orbital electron populations 1.20836 0.90665 1.03262 1.02537 1.20066 0.96478 0.93008 0.97355 1.20899 0.92997 0.98103 1.01039 1.21149 0.94643 0.96788 0.97633 1.17564 0.80393 0.94669 1.06663 1.44007 1.06129 1.64923 1.06071 1.25495 0.91850 0.91016 0.90893 1.86206 1.13254 1.87521 0.91510 1.23900 0.95975 1.07027 0.94970 1.19466 0.97850 0.97551 0.89136 1.20874 0.93331 1.52081 0.89574 0.90410 1.24946 0.97161 0.94245 0.96603 1.69881 1.31578 1.50138 1.01829 0.86838 0.85639 0.78770 0.78502 1.20025 1.21096 1.18859 1.69319 1.00285 1.26715 1.28780 1.18894 0.94263 0.93481 0.87017 1.20700 0.90715 1.02058 0.99898 1.21043 1.00467 0.95423 0.91963 1.20875 0.94244 1.03732 0.98040 1.20708 0.93493 0.94251 0.97284 1.20472 0.91738 1.13736 0.95713 1.18467 0.87698 0.76291 0.82570 1.90850 1.70547 1.48815 1.27720 1.21151 0.94642 0.96786 0.97635 1.20897 0.92995 0.98103 1.01042 0.90884 0.91155 0.91157 0.85050 0.85529 0.88677 0.88654 0.95509 0.95954 0.92438 0.84019 0.84957 0.85234 0.84817 0.85529 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.07 -0.67 5.88 -104.59 -0.62 -1.28 16 3 C -0.11 -1.16 9.69 -39.61 -0.38 -1.54 16 4 C -0.08 -1.04 9.97 -39.40 -0.39 -1.43 16 5 C 0.10 1.36 3.10 -83.63 -0.26 1.10 16 6 N -0.49 -7.60 2.67 -61.29 -0.16 -7.77 16 7 C 0.38 6.17 7.76 -88.34 -0.69 5.48 16 8 S -0.02 -0.38 20.73 -107.50 -2.23 -2.61 16 9 C -0.07 -1.35 4.72 37.16 0.18 -1.18 16 10 C 0.00 -0.01 4.04 -27.88 -0.11 -0.12 16 11 C -0.52 -14.05 9.66 -34.44 -0.33 -14.38 16 12 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 14 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 15 Si 0.88 20.72 27.47 -169.99 -4.67 16.06 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 19 N -0.52 -8.81 8.98 -10.74 -0.10 -8.91 16 20 C 0.18 2.72 6.63 -84.54 -0.56 2.16 16 21 C -0.11 -1.44 10.00 -39.58 -0.40 -1.84 16 22 C -0.07 -0.70 9.95 -39.91 -0.40 -1.09 16 23 C -0.15 -1.48 9.97 -39.87 -0.40 -1.88 16 24 C -0.04 -0.46 9.63 -39.67 -0.38 -0.85 16 25 C -0.21 -3.13 5.89 -104.77 -0.62 -3.75 16 26 C 0.56 9.05 7.62 -12.52 -0.10 8.96 16 27 O -0.51 -8.96 16.68 5.15 0.09 -8.87 16 28 C -0.08 -1.04 9.97 -39.40 -0.39 -1.43 16 29 C -0.11 -1.15 9.69 -39.61 -0.38 -1.54 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.09 1.85 8.10 -51.92 -0.42 1.43 16 36 H 0.09 1.85 8.09 -51.91 -0.42 1.43 16 37 H 0.03 0.60 7.20 -51.93 -0.37 0.23 16 38 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 41 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.13 1.51 7.82 -52.49 -0.41 1.10 16 44 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 45 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 396.69 15.07 5.98 5.98 Total: -1.00 -32.02 396.69 -12.11 -44.13 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.83 Total: 0.94 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -5.97 Total: -13.09 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.51 Total: -42.54 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.06 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -2.23 Total: -2.61 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.02 -12.11 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004975272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.116 kcal (2) G-P(sol) polarization free energy of solvation -32.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds