Wall clock time and date at job start Tue Mar 31 2020 05:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38281 * 119.92826 * 2 1 4 4 C 1.38110 * 120.06855 * 179.97438 * 3 2 1 5 5 C 1.38856 * 119.93312 * 0.02562 * 4 3 2 6 6 N 1.40077 * 120.07028 * 179.97438 * 5 4 3 7 7 C 1.36769 * 119.74704 * 90.12707 * 6 5 4 8 8 S 1.76197 * 118.48089 * 359.97438 * 7 6 5 9 9 C 1.80999 * 99.99844 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47192 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47202 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99907 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00095 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00415 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99828 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47113 * 90.00189 * 15 13 11 17 17 H 1.48502 * 109.47051 * 210.00058 * 15 13 11 18 18 H 1.48498 * 109.47229 * 329.99902 * 15 13 11 19 19 N 1.31021 * 123.03350 * 180.02562 * 7 6 5 20 20 C 1.35343 * 121.52393 * 0.02562 * 19 7 6 21 21 C 1.39805 * 121.62319 * 179.97438 * 20 19 7 22 22 C 1.36625 * 119.66333 * 180.02562 * 21 20 19 23 23 C 1.38914 * 120.97221 * 359.97438 * 22 21 20 24 24 C 1.36752 * 120.73460 * 0.02562 * 23 22 21 25 25 C 1.39433 * 119.51568 * 359.97438 * 24 23 22 26 26 C 1.35322 * 119.74561 * 270.15051 * 6 5 4 27 27 O 1.21738 * 121.21568 * 359.97438 * 26 6 5 28 28 C 1.38855 * 119.85829 * 0.27071 * 5 4 3 29 29 C 1.38117 * 119.93102 * 359.44930 * 28 5 4 30 30 H 1.08991 * 109.47401 * 89.99818 * 1 2 3 31 31 H 1.08998 * 109.46648 * 209.99458 * 1 2 3 32 32 H 1.09001 * 109.47087 * 329.99599 * 1 2 3 33 33 H 1.08004 * 119.96540 * 0.02562 * 3 2 1 34 34 H 1.08004 * 120.03576 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.47445 * 300.00037 * 9 8 7 36 36 H 1.09007 * 109.47009 * 60.00304 * 9 8 7 37 37 H 1.08998 * 109.47508 * 300.00188 * 10 9 8 38 38 H 1.09000 * 109.47101 * 60.00148 * 10 9 8 39 39 H 0.96990 * 120.00394 * 180.02562 * 14 13 11 40 40 H 1.08006 * 120.16486 * 0.05098 * 21 20 19 41 41 H 1.08001 * 119.52062 * 180.27756 * 22 21 20 42 42 H 1.08001 * 119.63265 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.24111 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.03276 * 179.72712 * 28 5 4 45 45 H 1.08001 * 119.96195 * 180.27962 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.2739 0.0002 0.0005 6 7 5.6747 0.0002 0.0005 7 6 6.3533 -0.0024 1.1880 8 16 5.4255 -0.0050 2.6859 9 6 6.7754 -0.0087 3.8916 10 6 6.1949 -0.0108 5.3072 11 6 7.3189 -0.0132 6.3111 12 1 8.3446 -0.0128 5.9733 13 6 7.0376 -0.0159 7.6609 14 7 8.0184 -0.0175 8.5370 15 14 5.2633 -0.0158 8.2453 16 1 4.7921 -1.4159 8.3971 17 1 5.1730 0.6815 9.5533 18 1 4.4144 0.6870 7.2500 19 7 7.6613 -0.0020 1.2631 20 6 8.4339 0.0016 0.1519 21 6 9.8298 0.0026 0.2296 22 6 10.5709 0.0067 -0.9182 23 6 9.9581 0.0095 -2.1648 24 6 8.5949 0.0087 -2.2735 25 6 7.8138 0.0044 -1.1185 26 6 6.3461 0.0034 -1.1744 27 8 5.7551 0.0057 -2.2387 28 6 3.5782 -1.2015 -0.0057 29 6 2.1970 -1.1983 -0.0004 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6552 2.1328 0.0004 34 1 4.1164 2.1381 0.0010 35 1 7.3881 -0.8988 3.7485 36 1 7.3893 0.8813 3.7525 37 1 5.5825 0.8795 5.4502 38 1 5.5808 -0.9004 5.4468 39 1 7.8206 -0.0198 9.4865 40 1 10.3198 -0.0004 1.1921 41 1 11.6491 0.0029 -0.8554 42 1 10.5650 0.0124 -3.0582 43 1 8.1269 0.0113 -3.2467 44 1 4.1166 -2.1378 -0.0102 45 1 1.6554 -2.1327 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004975272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:48 Heat of formation + Delta-G solvation = 24.985385 kcal Electronic energy + Delta-G solvation = -29251.816717 eV Core-core repulsion = 25324.569748 eV Total energy + Delta-G solvation = -3927.246969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.114 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.01695 -40.59487 -39.41534 -38.62101 -35.99796 -35.64883 -33.32779 -32.99600 -32.19278 -32.12011 -31.24852 -27.88329 -27.60859 -26.24511 -25.33944 -23.92869 -23.25198 -22.74083 -22.51782 -20.26031 -20.07826 -19.50902 -19.12130 -17.69132 -17.32499 -17.10822 -16.48932 -16.41987 -16.16674 -16.06001 -15.77701 -15.66669 -15.13321 -15.02240 -14.95921 -14.77850 -14.66150 -14.63051 -14.57376 -13.78527 -13.74679 -13.12322 -13.09897 -13.04272 -12.98744 -12.86860 -12.58836 -12.29837 -12.24116 -12.16307 -11.94911 -11.71020 -11.49732 -11.31009 -11.30699 -11.18720 -10.78156 -10.30027 -10.09249 -9.84186 -9.70680 -8.75698 -8.29852 -6.36244 -0.76951 -0.32917 -0.18638 -0.02562 0.29098 0.91846 0.92020 1.33550 1.38855 1.40351 1.51462 1.55146 2.36178 2.51276 2.81296 3.03664 3.05088 3.15553 3.62382 3.75383 3.82204 3.91562 3.94782 4.13499 4.18487 4.21994 4.22920 4.27531 4.32114 4.34062 4.57489 4.70642 4.73255 4.84245 4.88504 4.93761 4.98184 4.98904 5.07523 5.19439 5.25796 5.26314 5.26385 5.27124 5.35063 5.37310 5.53112 5.53930 5.73557 5.86248 6.22563 6.38764 6.46391 6.70135 7.27787 8.86279 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.006685 B = 0.003796 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4187.603664 B = 7374.815584 C =11246.070743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.065 4.065 3 C -0.112 4.112 4 C -0.100 4.100 5 C 0.064 3.936 6 N -0.485 5.485 7 C 0.364 3.636 8 S 0.013 5.987 9 C -0.068 4.068 10 C 0.005 3.995 11 C -0.528 4.528 12 H 0.038 0.962 13 C 0.013 3.987 14 N -0.946 5.946 15 Si 0.944 3.056 16 H -0.264 1.264 17 H -0.283 1.283 18 H -0.243 1.243 19 N -0.540 5.540 20 C 0.145 3.855 21 C -0.125 4.125 22 C -0.055 4.055 23 C -0.128 4.128 24 C -0.049 4.049 25 C -0.226 4.226 26 C 0.549 3.451 27 O -0.531 6.531 28 C -0.099 4.099 29 C -0.112 4.112 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.158 0.842 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.033 0.967 38 H 0.032 0.968 39 H 0.268 0.732 40 H 0.142 0.858 41 H 0.173 0.827 42 H 0.172 0.828 43 H 0.141 0.859 44 H 0.122 0.878 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.286 0.059 -23.001 24.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.065 4.065 3 C -0.130 4.130 4 C -0.119 4.119 5 C -0.025 4.025 6 N -0.206 5.206 7 C -0.008 4.008 8 S 0.250 5.750 9 C -0.217 4.217 10 C -0.034 4.034 11 C -0.568 4.568 12 H 0.057 0.943 13 C -0.185 4.185 14 N -0.585 5.585 15 Si 0.766 3.234 16 H -0.189 1.189 17 H -0.208 1.208 18 H -0.167 1.167 19 N -0.266 5.266 20 C 0.032 3.968 21 C -0.145 4.145 22 C -0.073 4.073 23 C -0.147 4.147 24 C -0.069 4.069 25 C -0.233 4.233 26 C 0.343 3.657 27 O -0.407 6.407 28 C -0.119 4.119 29 C -0.130 4.130 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.175 0.825 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.160 0.840 41 H 0.190 0.810 42 H 0.189 0.811 43 H 0.159 0.841 44 H 0.140 0.860 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.293 0.062 -22.613 24.845 hybrid contribution 1.066 -0.019 -0.151 1.077 sum -9.227 0.044 -22.763 24.563 Atomic orbital electron populations 1.20913 0.88057 1.04445 1.03667 1.20491 0.98298 0.92343 0.95400 1.21251 0.92114 0.99719 0.99915 1.21282 0.95828 0.96160 0.98621 1.17889 0.79737 0.95860 1.08989 1.43957 1.06919 1.64198 1.05505 1.25385 0.91940 0.92389 0.91100 1.85830 1.10567 1.88263 0.90298 1.23508 0.97134 1.06132 0.94911 1.19299 0.96340 0.98000 0.89762 1.21173 0.93192 1.51418 0.91037 0.94327 1.25904 1.02103 0.93798 0.96715 1.70035 1.34302 1.51886 1.02326 0.85756 0.79829 0.79492 0.78289 1.18887 1.20826 1.16659 1.69241 1.00830 1.26333 1.30237 1.19180 0.95246 0.95611 0.86774 1.20936 0.89866 1.02467 1.01282 1.21508 1.02272 0.92711 0.90857 1.21370 0.93421 1.00323 0.99542 1.20971 0.94613 0.94572 0.96698 1.20641 0.91330 1.14689 0.96639 1.18779 0.88416 0.76003 0.82484 1.90807 1.71141 1.50476 1.28318 1.21284 0.95826 0.96158 0.98610 1.21250 0.92112 0.99717 0.99909 0.89602 0.90006 0.90014 0.82473 0.85993 0.89667 0.89683 0.94866 0.94999 0.92256 0.84022 0.80979 0.81093 0.84086 0.85980 0.82463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 71.24 0.71 -0.42 16 2 C -0.07 -1.12 5.88 -19.84 -0.12 -1.23 16 3 C -0.11 -2.14 9.69 22.25 0.22 -1.92 16 4 C -0.10 -2.52 9.97 22.39 0.22 -2.30 16 5 C 0.06 1.85 3.10 38.12 0.12 1.97 16 6 N -0.48 -15.73 2.67 -465.71 -1.24 -16.97 16 7 C 0.36 12.36 7.76 179.55 1.39 13.75 16 8 S 0.01 0.42 20.73 -56.49 -1.17 -0.75 16 9 C -0.07 -2.70 4.72 71.98 0.34 -2.36 16 10 C 0.01 0.25 4.04 29.85 0.12 0.37 16 11 C -0.53 -29.59 9.66 25.60 0.25 -29.34 16 12 H 0.04 2.39 7.99 -2.91 -0.02 2.36 16 13 C 0.01 0.73 5.47 84.65 0.46 1.19 16 14 N -0.95 -57.93 13.96 21.45 0.30 -57.63 16 15 Si 0.94 42.43 27.47 68.60 1.88 44.31 16 16 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 19 N -0.54 -19.02 8.98 -187.90 -1.69 -20.70 16 20 C 0.15 4.57 6.63 39.75 0.26 4.83 16 21 C -0.13 -3.13 10.00 22.27 0.22 -2.91 16 22 C -0.05 -0.94 9.95 22.05 0.22 -0.72 16 23 C -0.13 -2.12 9.97 22.08 0.22 -1.90 16 24 C -0.05 -1.15 9.63 22.21 0.21 -0.94 16 25 C -0.23 -6.89 5.89 -19.96 -0.12 -7.01 16 26 C 0.55 18.62 7.62 86.42 0.66 19.27 16 27 O -0.53 -19.54 16.68 -4.47 -0.07 -19.61 16 28 C -0.10 -2.52 9.97 22.39 0.22 -2.29 16 29 C -0.11 -2.13 9.69 22.25 0.22 -1.92 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 32 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 33 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 34 H 0.12 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.08 3.48 8.10 -2.39 -0.02 3.46 16 36 H 0.08 3.48 8.09 -2.39 -0.02 3.46 16 37 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 38 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 39 H 0.27 15.30 8.31 -92.72 -0.77 14.53 16 40 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 42 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 43 H 0.14 3.05 7.82 -2.91 -0.02 3.02 16 44 H 0.12 3.06 8.06 -2.91 -0.02 3.03 16 45 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -73.63 396.69 4.80 -68.83 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.95 Total: 16.40 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 5.84 Total: -13.87 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -2.63 Total: -95.30 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.07 Total: -19.61 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.88 Total: 44.31 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -1.17 Total: -0.75 kcal Total: -73.63 4.80 -68.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004975272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.816 kcal (2) G-P(sol) polarization free energy of solvation -73.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds