Wall clock time and date at job start Tue Mar 31 2020 05:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 5 5 C 1.38133 * 120.03270 * 300.00103 * 4 2 1 6 6 C 1.38264 * 120.07035 * 180.02562 * 5 4 2 7 7 C 1.38303 * 120.13869 * 0.02562 * 6 5 4 8 8 C 1.38093 * 120.07066 * 359.97438 * 7 6 5 9 9 C 1.38840 * 120.03408 * 119.72894 * 4 2 1 10 10 N 1.40045 * 120.07270 * 359.97438 * 9 4 2 11 11 C 1.36855 * 119.79500 * 89.73188 * 10 9 4 12 12 S 1.76197 * 118.47838 * 359.97438 * 11 10 9 13 13 C 1.76206 * 99.99890 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00024 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99599 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00399 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99521 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47516 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47303 * 119.99893 * 17 15 13 20 20 H 1.48500 * 109.47456 * 240.00094 * 17 15 13 21 21 N 1.30960 * 123.04058 * 179.68585 * 11 10 9 22 22 C 1.34758 * 121.65399 * 0.59941 * 21 11 10 23 23 C 1.39838 * 121.53680 * 179.73528 * 22 21 11 24 24 C 1.36602 * 119.81358 * 179.97438 * 23 22 21 25 25 C 1.38925 * 120.97665 * 0.02562 * 24 23 22 26 26 C 1.37779 * 120.58910 * 359.96076 * 25 24 23 27 27 C 1.39406 * 119.41337 * 0.03795 * 26 25 24 28 28 C 1.35343 * 119.80027 * 270.00434 * 10 9 4 29 29 O 1.21730 * 121.25198 * 0.02562 * 28 10 9 30 30 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 31 31 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 32 32 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 34 34 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 36 36 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 37 37 H 1.08000 * 119.96533 * 359.97438 * 5 4 2 38 38 H 1.07999 * 119.92605 * 179.97438 * 6 5 4 39 39 H 1.07997 * 119.96461 * 180.02562 * 7 6 5 40 40 H 1.08000 * 120.03842 * 180.02562 * 8 7 6 41 41 H 0.97002 * 120.00200 * 179.97438 * 16 15 13 42 42 H 1.08001 * 120.09521 * 359.94286 * 23 22 21 43 43 H 1.07993 * 119.51494 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.70635 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.29165 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.6990 -0.2392 2.4854 6 6 2.1599 -0.8901 3.6148 7 6 2.9561 -2.0143 3.4921 8 6 3.2929 -2.4904 2.2404 9 6 2.8259 -1.8427 1.1039 10 7 3.1605 -2.3266 -0.1670 11 6 4.2923 -1.8756 -0.7902 12 16 5.2939 -0.6891 0.0427 13 6 6.5659 -0.4668 -1.1563 14 1 6.5346 -1.0171 -2.0850 15 6 7.6075 0.4164 -0.9075 16 7 7.6453 1.0869 0.2233 17 14 8.9555 0.6526 -2.1788 18 1 8.6827 -0.2108 -3.3559 19 1 8.9896 2.0744 -2.6059 20 1 10.2656 0.2823 -1.5859 21 7 4.6684 -2.2890 -1.9745 22 6 3.9477 -3.1900 -2.6708 23 6 4.3486 -3.6257 -3.9376 24 6 3.5914 -4.5408 -4.6122 25 6 2.4227 -5.0489 -4.0590 26 6 2.0013 -4.6397 -2.8127 27 6 2.7585 -3.7065 -2.1062 28 6 2.3596 -3.2334 -0.7737 29 8 1.3465 -3.6411 -0.2359 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.0784 0.6391 2.5845 38 1 1.8982 -0.5194 4.5949 39 1 3.3142 -2.5207 4.3762 40 1 3.9143 -3.3685 2.1452 41 1 8.3733 1.7039 0.3973 42 1 5.2542 -3.2394 -4.3816 43 1 3.9053 -4.8736 -5.5905 44 1 1.8399 -5.7720 -4.6103 45 1 1.0922 -5.0381 -2.3871 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004979699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:21 Heat of formation + Delta-G solvation = 20.910544 kcal Electronic energy + Delta-G solvation = -30989.337624 eV Core-core repulsion = 27061.913957 eV Total energy + Delta-G solvation = -3927.423667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.114 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.86764 -40.62661 -39.21336 -38.28480 -36.41272 -35.37421 -34.75153 -32.41597 -31.15248 -30.93609 -30.35368 -28.08078 -27.78774 -25.94642 -25.73552 -24.56010 -23.18649 -22.88841 -21.08623 -20.69702 -19.89843 -19.44878 -18.81280 -17.69624 -17.12683 -16.99994 -16.73229 -16.52422 -15.97987 -15.94061 -15.40933 -15.18370 -15.03851 -14.88833 -14.86848 -14.75906 -14.57197 -14.44003 -13.52880 -13.46131 -13.38417 -13.12794 -13.04442 -12.99481 -12.97353 -12.89197 -12.73581 -12.55434 -12.16239 -12.08995 -11.87828 -11.72937 -11.34377 -11.32385 -11.04170 -10.99395 -10.74008 -10.16971 -9.86754 -9.70998 -9.63165 -8.59319 -8.55321 -6.35176 -0.49970 -0.16247 0.14973 0.37532 0.61177 1.15058 1.37790 1.38672 1.52999 1.54443 1.75032 2.11415 2.66359 2.86701 2.98536 3.01702 3.29967 3.54854 3.58816 3.72374 3.80843 4.02278 4.09208 4.19673 4.21210 4.24305 4.32590 4.41452 4.41604 4.46783 4.48172 4.71108 4.73468 4.81694 4.87322 4.99538 5.01228 5.08603 5.14235 5.18016 5.23320 5.29132 5.36631 5.42338 5.45989 5.48638 5.49651 5.53940 5.55239 5.90628 5.97688 6.28779 6.61418 6.91240 6.95873 8.52973 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.006796 B = 0.005704 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4118.983364 B = 4907.566204 C = 7651.607771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.058 4.058 3 C -0.138 4.138 4 C -0.060 4.060 5 C -0.113 4.113 6 C -0.094 4.094 7 C -0.116 4.116 8 C -0.114 4.114 9 C 0.078 3.922 10 N -0.485 5.485 11 C 0.331 3.669 12 S 0.166 5.834 13 C -0.565 4.565 14 H 0.103 0.897 15 C 0.037 3.963 16 N -0.898 5.898 17 Si 0.992 3.008 18 H -0.266 1.266 19 H -0.267 1.267 20 H -0.268 1.268 21 N -0.560 5.560 22 C 0.162 3.838 23 C -0.144 4.144 24 C -0.050 4.050 25 C -0.149 4.149 26 C -0.043 4.043 27 C -0.251 4.251 28 C 0.547 3.453 29 O -0.543 6.543 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.029 0.971 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.159 0.841 38 H 0.169 0.831 39 H 0.159 0.841 40 H 0.112 0.888 41 H 0.282 0.718 42 H 0.134 0.866 43 H 0.171 0.829 44 H 0.169 0.831 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.806 -3.821 0.184 11.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.077 4.077 3 C -0.195 4.195 4 C -0.061 4.061 5 C -0.131 4.131 6 C -0.111 4.111 7 C -0.134 4.134 8 C -0.133 4.133 9 C -0.012 4.012 10 N -0.206 5.206 11 C -0.036 4.036 12 S 0.409 5.591 13 C -0.713 4.713 14 H 0.121 0.879 15 C -0.171 4.171 16 N -0.532 5.532 17 Si 0.814 3.186 18 H -0.190 1.190 19 H -0.192 1.192 20 H -0.193 1.193 21 N -0.289 5.289 22 C 0.044 3.956 23 C -0.165 4.165 24 C -0.069 4.069 25 C -0.168 4.168 26 C -0.063 4.063 27 C -0.260 4.260 28 C 0.342 3.658 29 O -0.421 6.421 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.176 0.824 38 H 0.187 0.813 39 H 0.176 0.824 40 H 0.130 0.870 41 H 0.091 0.909 42 H 0.152 0.848 43 H 0.189 0.811 44 H 0.186 0.814 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.678 -3.076 1.350 11.194 hybrid contribution 0.653 -0.882 -1.528 1.881 sum -10.025 -3.958 -0.178 10.780 Atomic orbital electron populations 1.21753 0.92166 1.01256 1.03531 1.20048 0.97438 0.96689 0.93560 1.21827 1.00859 0.93601 1.03212 1.20113 0.95586 0.93320 0.97090 1.21240 1.00631 1.00999 0.90203 1.21684 0.95270 0.94119 1.00048 1.21348 0.98428 0.97501 0.96138 1.21309 0.99488 0.99742 0.92788 1.17835 1.02760 0.97632 0.82933 1.43924 1.21603 1.38345 1.16765 1.26257 0.87633 0.97150 0.92520 1.83676 1.18172 1.36306 1.20936 1.23796 1.09717 1.30556 1.07232 0.87918 1.25981 0.99639 0.93214 0.98227 1.69974 1.33459 1.25379 1.24414 0.84987 0.76997 0.78623 0.77994 1.18999 1.19210 1.19277 1.69037 1.32777 1.20624 1.06424 1.19305 0.89778 0.91304 0.95227 1.20804 1.02371 1.00742 0.92577 1.21393 0.92750 0.92527 1.00248 1.21463 0.98035 1.02503 0.94824 1.21144 0.97829 0.92725 0.94554 1.20659 1.01312 1.08024 0.95974 1.18798 0.82572 0.78081 0.86319 1.90738 1.25261 1.58338 1.67749 0.89656 0.91381 0.94546 0.95266 0.94092 0.91627 0.89787 0.82361 0.81333 0.82376 0.86969 0.90877 0.84764 0.81138 0.81357 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 9.01 71.98 0.65 -2.85 16 2 C -0.06 -1.95 3.05 -11.54 -0.04 -1.98 16 3 C -0.14 -4.17 9.01 71.98 0.65 -3.52 16 4 C -0.06 -2.04 4.80 -19.74 -0.09 -2.13 16 5 C -0.11 -2.94 8.71 22.25 0.19 -2.75 16 6 C -0.09 -2.15 10.04 22.29 0.22 -1.92 16 7 C -0.12 -3.08 10.04 22.25 0.22 -2.86 16 8 C -0.11 -4.02 9.97 22.39 0.22 -3.79 16 9 C 0.08 3.05 3.10 38.13 0.12 3.17 16 10 N -0.49 -21.22 1.53 -465.62 -0.71 -21.93 16 11 C 0.33 15.73 7.49 179.54 1.34 17.07 16 12 S 0.17 8.29 20.32 -56.49 -1.15 7.14 16 13 C -0.56 -30.78 9.23 67.96 0.63 -30.15 16 14 H 0.10 5.75 6.48 -2.91 -0.02 5.73 16 15 C 0.04 1.92 5.49 84.88 0.47 2.39 16 16 N -0.90 -48.36 13.22 21.64 0.29 -48.08 16 17 Si 0.99 41.56 29.55 68.60 2.03 43.59 16 18 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 19 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 20 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 21 N -0.56 -26.93 8.28 -188.23 -1.56 -28.49 16 22 C 0.16 6.76 6.62 39.86 0.26 7.03 16 23 C -0.14 -4.79 9.98 22.27 0.22 -4.57 16 24 C -0.05 -1.21 9.95 22.05 0.22 -0.99 16 25 C -0.15 -3.52 10.02 22.33 0.22 -3.30 16 26 C -0.04 -1.36 9.68 22.44 0.22 -1.15 16 27 C -0.25 -10.10 5.90 -19.94 -0.12 -10.22 16 28 C 0.55 24.06 7.38 86.43 0.64 24.70 16 29 O -0.54 -24.71 16.69 -4.44 -0.07 -24.78 16 30 H 0.08 1.79 7.39 -2.39 -0.02 1.77 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.03 1.19 6.49 -2.39 -0.02 1.17 16 34 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 2.01 7.39 -2.39 -0.02 2.00 16 37 H 0.16 3.05 7.10 -2.91 -0.02 3.03 16 38 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 40 H 0.11 4.02 8.06 -2.91 -0.02 4.00 16 41 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 42 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 43 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 44 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 45 H 0.14 4.01 7.82 -2.91 -0.02 3.98 16 Total: -1.00 -71.14 392.24 6.09 -65.04 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 1.02 Total: 25.33 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 6.25 Total: -17.83 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -1.98 Total: -98.50 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.07 Total: -24.78 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 8.29 SS G_CDS: -1.15 Total: 7.14 kcal Total: -71.14 6.09 -65.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004979699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.952 kcal (2) G-P(sol) polarization free energy of solvation -71.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds