Wall clock time and date at job start Tue Mar 31 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39641 * 126.06361 * 2 1 4 4 C 1.38521 * 105.35043 * 180.02562 * 3 2 1 5 5 C 1.47015 * 126.89208 * 179.97438 * 4 3 2 6 6 O 1.21615 * 120.00186 * 359.97438 * 5 4 3 7 7 N 1.34770 * 119.99973 * 180.02562 * 5 4 3 8 8 N 1.40100 * 120.00369 * 179.97438 * 7 5 4 9 9 C 1.31144 * 120.00479 * 179.97438 * 8 7 5 10 10 C 1.48135 * 127.52023 * 180.02562 * 9 8 7 11 11 C 1.39052 * 133.21939 * 0.02562 * 10 9 8 12 12 C 1.38053 * 119.73518 * 180.02562 * 11 10 9 13 13 C 1.38485 * 120.07005 * 359.97438 * 12 11 10 14 14 C 1.38014 * 120.61957 * 0.02562 * 13 12 11 15 15 C 1.39077 * 120.13408 * 0.02562 * 14 13 12 16 16 N 1.39039 * 131.63050 * 179.97438 * 15 14 13 17 17 C 1.46496 * 124.28191 * 359.96462 * 16 15 14 18 18 C 1.53002 * 109.47428 * 89.99446 * 17 16 15 19 19 C 1.50706 * 109.46931 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00193 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99398 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 26 26 H 1.48498 * 109.47295 * 60.00420 * 23 21 19 27 27 C 1.34396 * 111.44491 * 180.22485 * 16 15 14 28 28 O 1.21689 * 126.05700 * 179.73303 * 27 16 15 29 29 N 1.36639 * 106.20752 * 0.22784 * 4 3 2 30 30 H 0.97003 * 125.19238 * 179.77206 * 29 4 3 31 31 N 1.28441 * 109.61467 * 359.61632 * 29 4 3 32 32 H 1.09007 * 109.47274 * 89.99167 * 1 2 3 33 33 H 1.08993 * 109.47262 * 209.99941 * 1 2 3 34 34 H 1.09003 * 109.46813 * 330.00286 * 1 2 3 35 35 H 1.07994 * 127.32115 * 359.97438 * 3 2 1 36 36 H 0.97000 * 120.00307 * 0.02562 * 7 5 4 37 37 H 1.08002 * 120.12790 * 359.97438 * 11 10 9 38 38 H 1.08000 * 119.96514 * 180.02562 * 12 11 10 39 39 H 1.07992 * 119.68654 * 180.02562 * 13 12 11 40 40 H 1.08000 * 119.93494 * 179.97438 * 14 13 12 41 41 H 1.09004 * 109.47181 * 329.99698 * 17 16 15 42 42 H 1.09004 * 109.47212 * 209.99849 * 17 16 15 43 43 H 1.09000 * 109.46986 * 60.00432 * 18 17 16 44 44 H 1.08992 * 109.46974 * 300.00496 * 18 17 16 45 45 H 0.97000 * 119.99706 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3290 1.1288 0.0000 4 6 3.6247 0.6389 -0.0006 5 6 4.8660 1.4265 -0.0014 6 8 4.8153 2.6416 -0.0020 7 7 6.0603 0.8020 -0.0024 8 7 7.2433 1.5525 -0.0037 9 6 8.4055 0.9448 -0.0042 10 6 9.7494 1.5680 -0.0050 11 6 10.1870 2.8878 -0.0050 12 6 11.5404 3.1605 -0.0064 13 6 12.4573 2.1227 -0.0073 14 6 12.0327 0.8095 -0.0073 15 6 10.6734 0.5152 -0.0070 16 7 9.9905 -0.6959 -0.0074 17 6 10.6396 -2.0092 -0.0091 18 6 10.8671 -2.4676 1.4328 19 6 11.5343 -3.8190 1.4309 20 1 11.7727 -4.3022 0.4949 21 6 11.8404 -4.4382 2.6242 22 7 11.5497 -3.8499 3.7639 23 14 12.6681 -6.1128 2.6218 24 1 12.8876 -6.5584 4.0213 25 1 11.8000 -7.0931 1.9212 26 1 13.9740 -6.0186 1.9213 27 6 8.6595 -0.5096 -0.0117 28 8 7.8138 -1.3845 -0.0176 29 7 3.5173 -0.7233 -0.0061 30 1 4.2637 -1.3429 -0.0110 31 7 2.2774 -1.0581 -0.0007 32 1 -0.3634 0.0001 -1.0277 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3633 0.8901 0.5138 35 1 2.0202 2.1637 -0.0004 36 1 6.1009 -0.1671 -0.0030 37 1 9.4710 3.6964 -0.0047 38 1 11.8844 4.1842 -0.0060 39 1 13.5145 2.3430 -0.0080 40 1 12.7574 0.0087 -0.0085 41 1 11.5980 -1.9401 -0.5238 42 1 10.0023 -2.7289 -0.5230 43 1 9.9088 -2.5368 1.9475 44 1 11.5044 -1.7480 1.9466 45 1 11.1202 -2.9802 3.7650 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005045024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:07 Heat of formation + Delta-G solvation = 83.318620 kcal Electronic energy + Delta-G solvation = -31481.719754 eV Core-core repulsion = 27081.116274 eV Total energy + Delta-G solvation = -4400.603481 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.94067 -41.79042 -39.77676 -38.58830 -36.75889 -36.07935 -34.27578 -33.65241 -32.91526 -31.53347 -30.75178 -30.37065 -28.84451 -28.16651 -26.45588 -24.65074 -23.63396 -22.65255 -22.00428 -21.44267 -21.28186 -20.60915 -20.12957 -19.35271 -18.15089 -17.20838 -16.97849 -16.38559 -16.35362 -15.95912 -15.89488 -15.76618 -15.07107 -15.03860 -14.42943 -14.25249 -14.03953 -13.83221 -13.74153 -13.40526 -13.27299 -13.20671 -13.14930 -12.92734 -12.78249 -12.60098 -12.43425 -12.13644 -11.97077 -11.28361 -11.18048 -11.01363 -10.99138 -10.63853 -10.42747 -10.24730 -10.12011 -9.93870 -9.86842 -9.56013 -9.50602 -8.83993 -8.70746 -8.50273 -7.95940 -6.53891 -4.26208 -0.06704 0.84088 1.15697 1.64652 1.72749 2.16679 2.38633 2.61966 2.70497 2.98153 3.34539 3.36356 3.55067 3.64536 3.69190 3.88275 4.19407 4.34153 4.40890 4.45809 4.61998 4.81723 4.90742 4.99366 5.10054 5.23993 5.27449 5.30719 5.32386 5.35946 5.42290 5.55177 5.61694 5.72829 5.88267 5.95014 6.09561 6.15248 6.25381 6.31841 6.36935 6.43756 6.55644 6.60011 6.82891 6.91334 7.09542 7.23312 7.57269 7.61009 7.70877 7.93626 8.24456 8.66657 9.47276 10.86658 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.007669 B = 0.002626 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3650.151268 B =10660.854049 C =13886.650960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.023 3.977 3 C -0.138 4.138 4 C -0.040 4.040 5 C 0.612 3.388 6 O -0.479 6.479 7 N -0.575 5.575 8 N -0.131 5.131 9 C 0.089 3.911 10 C -0.113 4.113 11 C -0.033 4.033 12 C -0.152 4.152 13 C -0.063 4.063 14 C -0.134 4.134 15 C 0.179 3.821 16 N -0.529 5.529 17 C 0.118 3.882 18 C -0.001 4.001 19 C -0.607 4.607 20 H 0.053 0.947 21 C 0.020 3.980 22 N -0.905 5.905 23 Si 1.071 2.929 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.286 1.286 27 C 0.537 3.463 28 O -0.504 6.504 29 N -0.374 5.374 30 H 0.449 0.551 31 N -0.258 5.258 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.170 0.830 36 H 0.404 0.596 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.012 0.988 44 H 0.015 0.985 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.073 13.637 -9.999 19.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.135 4.135 3 C -0.167 4.167 4 C -0.169 4.169 5 C 0.399 3.601 6 O -0.347 6.347 7 N -0.321 5.321 8 N 0.058 4.942 9 C -0.102 4.102 10 C -0.119 4.119 11 C -0.053 4.053 12 C -0.171 4.171 13 C -0.082 4.082 14 C -0.155 4.155 15 C 0.079 3.921 16 N -0.248 5.248 17 C -0.001 4.001 18 C -0.039 4.039 19 C -0.646 4.646 20 H 0.072 0.928 21 C -0.185 4.185 22 N -0.540 5.540 23 Si 0.898 3.102 24 H -0.206 1.206 25 H -0.213 1.213 26 H -0.212 1.212 27 C 0.322 3.678 28 O -0.377 6.377 29 N -0.091 5.091 30 H 0.295 0.705 31 N -0.092 5.092 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.187 0.813 36 H 0.245 0.755 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.679 12.304 -9.013 18.619 hybrid contribution 0.288 0.281 -0.925 1.009 sum -10.391 12.585 -9.938 19.109 Atomic orbital electron populations 1.20125 0.85879 1.03561 1.03076 1.22158 0.97543 0.88408 1.05389 1.22106 0.88974 1.00882 1.04782 1.21389 0.95325 0.84692 1.15540 1.16724 0.79898 0.87118 0.76406 1.90862 1.85885 1.12159 1.45822 1.46920 1.02833 1.10124 1.72256 1.75349 0.90659 1.21553 1.06652 1.23433 0.92154 0.93164 1.01436 1.18243 0.87429 0.93958 1.12242 1.20638 0.96139 0.93794 0.94776 1.21023 0.92178 0.99646 1.04278 1.21076 1.00221 0.91316 0.95611 1.20438 0.91979 0.97943 1.05127 1.18377 0.93431 0.84009 0.96259 1.45901 1.05870 1.07372 1.65672 1.22147 0.97049 0.78568 1.02312 1.19558 0.97072 0.97380 0.89859 1.21816 1.44018 1.03429 0.95333 0.92846 1.25896 0.96115 1.04512 0.92016 1.70791 1.38627 1.17142 1.27433 0.83516 0.76074 0.74430 0.76174 1.20616 1.21295 1.21218 1.18997 0.83128 0.88442 0.77196 1.90747 1.48359 1.49657 1.48960 1.43768 1.06873 1.05368 1.53123 0.70534 1.73167 0.89472 1.27641 1.18959 0.90540 0.90678 0.90241 0.81274 0.75451 0.84683 0.84912 0.84731 0.84469 0.89842 0.89671 0.96924 0.96704 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.45 36.00 0.38 -0.06 16 2 C 0.02 0.23 7.22 -82.47 -0.60 -0.37 16 3 C -0.14 -1.46 10.78 -38.95 -0.42 -1.88 16 4 C -0.04 -0.48 7.15 -82.06 -0.59 -1.06 16 5 C 0.61 8.65 7.92 -12.71 -0.10 8.55 16 6 O -0.48 -7.91 17.25 5.26 0.09 -7.81 16 7 N -0.57 -8.31 6.25 30.33 0.19 -8.12 16 8 N -0.13 -2.05 11.19 34.74 0.39 -1.66 16 9 C 0.09 1.39 7.56 -80.26 -0.61 0.79 16 10 C -0.11 -1.60 6.34 -104.84 -0.67 -2.26 16 11 C -0.03 -0.37 10.09 -39.35 -0.40 -0.77 16 12 C -0.15 -1.41 10.05 -39.56 -0.40 -1.81 16 13 C -0.06 -0.61 10.01 -39.57 -0.40 -1.01 16 14 C -0.13 -1.70 9.78 -39.35 -0.39 -2.08 16 15 C 0.18 2.69 6.73 -83.59 -0.56 2.13 16 16 N -0.53 -9.24 2.73 -114.49 -0.31 -9.55 16 17 C 0.12 2.28 5.72 -4.04 -0.02 2.26 16 18 C 0.00 -0.02 4.61 -27.88 -0.13 -0.15 16 19 C -0.61 -16.35 9.11 -34.44 -0.31 -16.67 16 20 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 21 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 22 N -0.90 -27.08 13.65 55.43 0.76 -26.32 16 23 Si 1.07 24.31 29.90 -169.99 -5.08 19.23 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.54 9.49 7.94 -12.59 -0.10 9.39 16 28 O -0.50 -9.51 15.47 5.20 0.08 -9.43 16 29 N -0.37 -4.14 6.85 33.47 0.23 -3.91 16 30 H 0.45 4.23 8.22 -190.45 -1.57 2.67 16 31 N -0.26 -2.99 12.14 33.63 0.41 -2.58 16 32 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.40 5.52 5.45 -182.60 -1.00 4.52 16 37 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.14 1.69 7.80 -52.49 -0.41 1.28 16 41 H 0.08 1.44 7.74 -51.93 -0.40 1.04 16 42 H 0.08 1.68 7.96 -51.93 -0.41 1.27 16 43 H 0.01 0.34 8.01 -51.93 -0.42 -0.08 16 44 H 0.01 0.37 8.01 -51.93 -0.42 -0.04 16 45 H 0.27 8.08 7.22 -40.82 -0.29 7.79 16 LS Contribution 398.49 15.07 6.01 6.01 Total: -1.00 -34.32 398.49 -9.72 -44.04 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.07 Total: 4.66 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -5.40 Total: -4.55 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 1.66 Total: -52.15 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.17 Total: -17.25 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.08 Total: 19.23 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.32 -9.72 -44.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005045024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.360 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds