Wall clock time and date at job start Tue Mar 31 2020 04:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34724 * 117.00160 * 2 1 4 4 O 1.21480 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.47675 * 120.00068 * 180.02562 * 3 2 1 6 6 C 1.39794 * 119.97192 * 180.02562 * 5 3 2 7 7 C 1.37080 * 120.03240 * 179.97438 * 6 5 3 8 8 C 1.40047 * 119.96969 * 0.02562 * 7 6 5 9 9 C 1.46957 * 120.03078 * 179.97438 * 8 7 6 10 10 C 1.35596 * 120.00070 * 6.78151 * 9 8 7 11 11 O 1.35288 * 126.24088 * 6.75756 * 10 9 8 12 12 C 1.35110 * 111.85938 * 180.20810 * 11 10 9 13 13 C 1.38861 * 131.33615 * 179.86164 * 12 11 10 14 14 C 1.38745 * 119.99945 * 179.66979 * 13 12 11 15 15 O 1.35556 * 119.72055 * 179.97438 * 14 13 12 16 16 C 1.34743 * 117.00333 * 354.18828 * 15 14 13 17 17 H 1.08005 * 120.00126 * 354.63957 * 16 15 14 18 18 C 1.38789 * 120.00343 * 174.64809 * 16 15 14 19 19 N 1.31465 * 119.99599 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00332 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47280 * 89.99695 * 20 18 16 22 22 H 1.48495 * 109.47128 * 209.99650 * 20 18 16 23 23 H 1.48498 * 109.46979 * 329.99773 * 20 18 16 24 24 C 1.39379 * 120.55009 * 0.02562 * 14 13 12 25 25 C 1.36559 * 120.13138 * 0.02562 * 24 14 13 26 26 C 1.39621 * 119.90880 * 359.97438 * 25 24 14 27 27 C 1.47358 * 133.11552 * 180.02562 * 26 25 24 28 28 O 1.21830 * 127.76266 * 0.03153 * 27 26 25 29 29 C 1.40044 * 119.93880 * 0.24880 * 8 7 6 30 30 C 1.37082 * 119.96869 * 359.48744 * 29 8 7 31 31 H 1.09003 * 109.47490 * 59.99264 * 1 2 3 32 32 H 1.08994 * 109.47412 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46691 * 299.99382 * 1 2 3 34 34 H 1.08004 * 119.98566 * 0.02562 * 6 5 3 35 35 H 1.07996 * 120.02036 * 179.97438 * 7 6 5 36 36 H 1.08003 * 119.99954 * 186.77992 * 9 8 7 37 37 H 1.07998 * 119.99646 * 359.68926 * 13 12 11 38 38 H 0.97005 * 119.99920 * 180.02562 * 19 18 16 39 39 H 1.08003 * 119.93389 * 179.97438 * 24 14 13 40 40 H 1.08004 * 120.04410 * 180.02562 * 25 24 14 41 41 H 1.07996 * 120.01848 * 179.72523 * 29 8 7 42 42 H 1.08001 * 119.99069 * 180.27428 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2192 0.0005 5 6 3.5384 1.2776 -0.0006 6 6 4.1725 2.5235 0.0000 7 6 5.5413 2.5967 0.0000 8 6 6.3047 1.4225 -0.0011 9 6 7.7722 1.4994 -0.0017 10 6 8.3884 2.6993 0.1375 11 8 7.7874 3.8799 0.4118 12 6 8.6782 4.8933 0.4826 13 6 8.5077 6.2483 0.7340 14 6 9.6081 7.0930 0.7588 15 8 9.4352 8.4149 1.0043 16 6 8.1664 8.8595 1.0948 17 1 7.3439 8.1909 0.8878 18 6 7.9166 10.1766 1.4539 19 7 8.9178 10.9903 1.7063 20 14 6.1577 10.7932 1.5787 21 1 5.6559 10.5820 2.9604 22 1 6.1166 12.2414 1.2530 23 1 5.3023 10.0461 0.6219 24 6 10.8896 6.5939 0.5324 25 6 11.0731 5.2639 0.2828 26 6 9.9745 4.4028 0.2549 27 6 9.8356 2.9545 0.0208 28 8 10.7187 2.1487 -0.2142 29 6 5.6682 0.1751 -0.0075 30 6 4.2992 0.1048 -0.0020 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 3.5836 3.4289 0.0012 35 1 6.0310 3.5593 0.0000 36 1 8.3600 0.6002 -0.1129 37 1 7.5187 6.6445 0.9105 38 1 8.7432 11.9108 1.9576 39 1 11.7392 7.2605 0.5537 40 1 12.0668 4.8786 0.1080 41 1 6.2556 -0.7311 -0.0128 42 1 3.8080 -0.8570 -0.0024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005157000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:49 Heat of formation + Delta-G solvation = -85.732729 kcal Electronic energy + Delta-G solvation = -30470.932075 eV Core-core repulsion = 25928.005292 eV Total energy + Delta-G solvation = -4542.926783 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.103 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.93240 -40.78881 -39.23818 -38.90449 -37.95028 -36.70677 -36.17119 -33.74555 -32.72192 -31.39529 -30.68911 -29.85164 -29.57769 -27.93315 -26.26620 -25.22247 -23.37305 -23.17531 -22.33871 -21.34410 -20.59898 -20.22464 -18.44886 -18.34974 -17.74484 -17.37464 -16.91955 -16.63623 -16.20693 -16.11942 -15.53414 -15.45576 -14.81135 -14.68065 -14.47480 -14.09304 -14.05443 -14.00343 -13.81203 -13.62090 -13.54272 -13.49040 -13.25766 -12.99244 -12.93261 -12.46554 -12.23605 -12.02764 -11.97039 -11.50756 -11.26291 -11.13171 -11.08343 -11.03143 -10.80586 -10.66706 -10.25228 -9.96352 -9.47037 -9.30294 -9.20618 -8.70293 -7.88502 -7.70251 -6.88912 -4.41852 -0.21214 0.87592 1.17661 1.76372 2.00918 2.37034 2.41770 2.81999 2.93086 2.95688 3.00849 3.12042 3.64352 3.66579 3.78518 4.19484 4.38118 4.59032 4.69076 4.70031 4.72611 4.77313 4.79251 4.84728 4.99261 5.08484 5.10917 5.19795 5.23893 5.38816 5.53959 5.67978 5.73486 5.84531 5.86091 5.93760 6.00041 6.02752 6.19372 6.31952 6.35692 6.52913 6.63233 6.75082 6.85204 6.98282 7.04747 7.44979 7.45644 7.55889 7.62907 8.54384 9.15892 10.25767 Molecular weight = 366.10amu Principal moments of inertia in cm(-1) A = 0.007756 B = 0.002574 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3609.461235 B =10875.290390 C =14449.522053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.509 3.491 4 O -0.505 6.505 5 C -0.132 4.132 6 C -0.051 4.051 7 C -0.118 4.118 8 C -0.018 4.018 9 C -0.085 4.085 10 C 0.013 3.987 11 O -0.217 6.217 12 C 0.173 3.827 13 C -0.250 4.250 14 C 0.199 3.801 15 O -0.139 6.139 16 C -0.392 4.392 17 H 0.104 0.896 18 C 0.046 3.954 19 N -0.837 5.837 20 Si 0.947 3.053 21 H -0.268 1.268 22 H -0.273 1.273 23 H -0.262 1.262 24 C -0.212 4.212 25 C 0.028 3.972 26 C -0.364 4.364 27 C 0.414 3.586 28 O -0.449 6.449 29 C -0.120 4.120 30 C -0.065 4.065 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.140 0.860 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.143 0.857 38 H 0.279 0.721 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.136 0.864 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.920 -18.725 -2.752 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.354 3.646 4 O -0.394 6.394 5 C -0.133 4.133 6 C -0.069 4.069 7 C -0.135 4.135 8 C -0.018 4.018 9 C -0.104 4.104 10 C -0.033 4.033 11 O -0.126 6.126 12 C 0.129 3.871 13 C -0.270 4.270 14 C 0.139 3.861 15 O -0.037 6.037 16 C -0.467 4.467 17 H 0.121 0.879 18 C -0.163 4.163 19 N -0.467 5.467 20 Si 0.770 3.230 21 H -0.193 1.193 22 H -0.198 1.198 23 H -0.186 1.186 24 C -0.231 4.231 25 C 0.010 3.990 26 C -0.367 4.367 27 C 0.297 3.703 28 O -0.330 6.330 29 C -0.138 4.138 30 C -0.083 4.083 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.158 0.842 35 H 0.173 0.827 36 H 0.180 0.820 37 H 0.161 0.839 38 H 0.090 0.910 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.154 0.846 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.757 -18.277 -2.722 20.896 hybrid contribution -1.158 0.406 0.134 1.234 sum -10.915 -17.871 -2.588 21.100 Atomic orbital electron populations 1.23288 0.75932 1.03757 1.02743 1.86537 1.23599 1.32722 1.84449 1.21277 0.89229 0.81415 0.72696 1.90851 1.66804 1.36000 1.45718 1.19183 0.88755 0.95176 1.10211 1.21127 0.94598 0.96742 0.94398 1.21873 0.93237 0.99524 0.98876 1.19208 0.92361 0.93597 0.96641 1.21679 0.92491 0.94038 1.02234 1.22239 0.93892 0.85988 1.01178 1.84336 1.34124 1.14499 1.79642 1.19284 0.86472 0.88432 0.92946 1.19934 1.01185 0.88329 1.17534 1.19098 0.92422 0.84081 0.90507 1.83949 1.30967 1.17084 1.71693 1.21661 0.80883 0.96130 1.48007 0.87900 1.25512 1.00839 0.94804 0.95176 1.69986 1.31830 1.06408 1.38490 0.85591 0.79147 0.78654 0.79576 1.19284 1.19775 1.18561 1.19930 0.95392 0.95261 1.12537 1.19838 0.96702 0.91108 0.91394 1.20213 0.95084 0.95228 1.26157 1.20532 0.87076 0.88419 0.74225 1.90644 1.47723 1.54752 1.39863 1.21167 0.94302 0.97039 1.01251 1.21187 0.93706 0.97807 0.95571 0.91779 0.87942 0.91759 0.84215 0.82697 0.81987 0.83949 0.91040 0.85022 0.85598 0.84578 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.31 16 2 O -0.36 -3.46 9.80 -40.56 -0.40 -3.85 16 3 C 0.51 6.07 7.89 34.58 0.27 6.35 16 4 O -0.50 -7.32 16.12 -19.25 -0.31 -7.63 16 5 C -0.13 -1.50 5.88 -104.88 -0.62 -2.12 16 6 C -0.05 -0.62 9.55 -39.42 -0.38 -0.99 16 7 C -0.12 -1.49 9.20 -39.32 -0.36 -1.85 16 8 C -0.02 -0.21 5.87 -105.01 -0.62 -0.82 16 9 C -0.09 -1.02 9.89 -37.00 -0.37 -1.38 16 10 C 0.01 0.19 6.83 -36.79 -0.25 -0.06 16 11 O -0.22 -3.58 7.12 0.64 0.00 -3.58 16 12 C 0.17 3.20 7.27 -38.51 -0.28 2.92 16 13 C -0.25 -5.01 9.14 -39.16 -0.36 -5.37 16 14 C 0.20 4.28 6.65 -38.97 -0.26 4.02 16 15 O -0.14 -3.49 9.74 0.89 0.01 -3.48 16 16 C -0.39 -9.71 9.43 30.94 0.29 -9.42 16 17 H 0.10 2.34 5.26 -52.48 -0.28 2.06 16 18 C 0.05 1.12 5.50 -17.50 -0.10 1.02 16 19 N -0.84 -21.94 13.67 55.49 0.76 -21.18 16 20 Si 0.95 18.43 29.55 -169.99 -5.02 13.40 16 21 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 22 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 23 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 24 C -0.21 -4.01 9.93 -39.76 -0.39 -4.40 16 25 C 0.03 0.50 10.04 -39.67 -0.40 0.10 16 26 C -0.36 -6.65 6.34 -104.83 -0.66 -7.32 16 27 C 0.41 7.12 7.81 -32.13 -0.25 6.86 16 28 O -0.45 -8.25 18.06 5.07 0.09 -8.15 16 29 C -0.12 -1.09 9.76 -39.32 -0.38 -1.47 16 30 C -0.06 -0.60 9.57 -39.42 -0.38 -0.98 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.14 1.69 7.63 -52.48 -0.40 1.29 16 35 H 0.16 2.14 4.92 -52.49 -0.26 1.88 16 36 H 0.16 1.54 8.06 -52.48 -0.42 1.12 16 37 H 0.14 2.80 5.67 -52.49 -0.30 2.50 16 38 H 0.28 6.67 8.31 -40.82 -0.34 6.34 16 39 H 0.13 2.29 8.06 -52.48 -0.42 1.87 16 40 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 41 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.14 0.98 7.59 -52.49 -0.40 0.58 16 LS Contribution 378.53 15.07 5.70 5.70 Total: -1.00 -29.61 378.53 -7.31 -36.92 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.72 Total: 5.45 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -4.42 Total: -13.60 kcal Atomic # 7 Polarization: -21.94 SS G_CDS: 0.76 Total: -21.18 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.60 Total: -26.69 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.40 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.61 -7.31 -36.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005157000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.816 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds