Wall clock time and date at job start Tue Mar 31 2020 04:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34724 * 117.00160 * 2 1 4 4 O 1.21480 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.47675 * 120.00068 * 180.02562 * 3 2 1 6 6 C 1.39794 * 119.97192 * 180.02562 * 5 3 2 7 7 C 1.37080 * 120.03240 * 179.97438 * 6 5 3 8 8 C 1.40047 * 119.96969 * 0.02562 * 7 6 5 9 9 C 1.46957 * 120.03078 * 179.97438 * 8 7 6 10 10 C 1.35596 * 120.00070 * 6.78151 * 9 8 7 11 11 O 1.35288 * 126.24088 * 6.75756 * 10 9 8 12 12 C 1.35110 * 111.85938 * 180.20810 * 11 10 9 13 13 C 1.38861 * 131.33615 * 179.86164 * 12 11 10 14 14 C 1.38745 * 119.99945 * 179.66979 * 13 12 11 15 15 O 1.35556 * 119.72055 * 179.97438 * 14 13 12 16 16 C 1.34743 * 117.00333 * 354.18828 * 15 14 13 17 17 H 1.08005 * 120.00126 * 354.63957 * 16 15 14 18 18 C 1.38789 * 120.00343 * 174.64809 * 16 15 14 19 19 N 1.31465 * 119.99599 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00332 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47280 * 89.99695 * 20 18 16 22 22 H 1.48495 * 109.47128 * 209.99650 * 20 18 16 23 23 H 1.48498 * 109.46979 * 329.99773 * 20 18 16 24 24 C 1.39379 * 120.55009 * 0.02562 * 14 13 12 25 25 C 1.36559 * 120.13138 * 0.02562 * 24 14 13 26 26 C 1.39621 * 119.90880 * 359.97438 * 25 24 14 27 27 C 1.47358 * 133.11552 * 180.02562 * 26 25 24 28 28 O 1.21830 * 127.76266 * 0.03153 * 27 26 25 29 29 C 1.40044 * 119.93880 * 0.24880 * 8 7 6 30 30 C 1.37082 * 119.96869 * 359.48744 * 29 8 7 31 31 H 1.09003 * 109.47490 * 59.99264 * 1 2 3 32 32 H 1.08994 * 109.47412 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46691 * 299.99382 * 1 2 3 34 34 H 1.08004 * 119.98566 * 0.02562 * 6 5 3 35 35 H 1.07996 * 120.02036 * 179.97438 * 7 6 5 36 36 H 1.08003 * 119.99954 * 186.77992 * 9 8 7 37 37 H 1.07998 * 119.99646 * 359.68926 * 13 12 11 38 38 H 0.97005 * 119.99920 * 180.02562 * 19 18 16 39 39 H 1.08003 * 119.93389 * 179.97438 * 24 14 13 40 40 H 1.08004 * 120.04410 * 180.02562 * 25 24 14 41 41 H 1.07996 * 120.01848 * 179.72523 * 29 8 7 42 42 H 1.08001 * 119.99069 * 180.27428 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2192 0.0005 5 6 3.5384 1.2776 -0.0006 6 6 4.1725 2.5235 0.0000 7 6 5.5413 2.5967 0.0000 8 6 6.3047 1.4225 -0.0011 9 6 7.7722 1.4994 -0.0017 10 6 8.3884 2.6993 0.1375 11 8 7.7874 3.8799 0.4118 12 6 8.6782 4.8933 0.4826 13 6 8.5077 6.2483 0.7340 14 6 9.6081 7.0930 0.7588 15 8 9.4352 8.4149 1.0043 16 6 8.1664 8.8595 1.0948 17 1 7.3439 8.1909 0.8878 18 6 7.9166 10.1766 1.4539 19 7 8.9178 10.9903 1.7063 20 14 6.1577 10.7932 1.5787 21 1 5.6559 10.5820 2.9604 22 1 6.1166 12.2414 1.2530 23 1 5.3023 10.0461 0.6219 24 6 10.8896 6.5939 0.5324 25 6 11.0731 5.2639 0.2828 26 6 9.9745 4.4028 0.2549 27 6 9.8356 2.9545 0.0208 28 8 10.7187 2.1487 -0.2142 29 6 5.6682 0.1751 -0.0075 30 6 4.2992 0.1048 -0.0020 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 3.5836 3.4289 0.0012 35 1 6.0310 3.5593 0.0000 36 1 8.3600 0.6002 -0.1129 37 1 7.5187 6.6445 0.9105 38 1 8.7432 11.9108 1.9576 39 1 11.7392 7.2605 0.5537 40 1 12.0668 4.8786 0.1080 41 1 6.2556 -0.7311 -0.0128 42 1 3.8080 -0.8570 -0.0024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005157000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:48 Heat of formation + Delta-G solvation = -100.758400 kcal Electronic energy + Delta-G solvation = -30471.583637 eV Core-core repulsion = 25928.005292 eV Total energy + Delta-G solvation = -4543.578345 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.103 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.25729 -41.67916 -40.71355 -39.94288 -39.32892 -37.72833 -37.55516 -34.82180 -34.42740 -32.27055 -31.98863 -31.31068 -30.81020 -28.68397 -27.83409 -26.47571 -24.60153 -24.27488 -23.50604 -22.49995 -21.81493 -21.48984 -19.97506 -19.52237 -19.02777 -18.39517 -18.17121 -17.54827 -17.46548 -17.43435 -16.86249 -16.49534 -16.17938 -15.93290 -15.73874 -15.65334 -15.32475 -15.08746 -14.93198 -14.86852 -14.60287 -14.58470 -14.37326 -14.24959 -13.85184 -13.74977 -13.63063 -13.12252 -13.03947 -12.94304 -12.61755 -12.54582 -12.16023 -12.09923 -11.87012 -11.75055 -11.61831 -11.33512 -10.91973 -10.86441 -10.14607 -9.99996 -9.35160 -9.06864 -8.63455 -6.29537 -1.30808 -0.29035 0.32106 0.33947 0.63804 1.34918 1.36559 1.44799 1.50078 1.52168 1.62346 1.85123 2.09259 2.56273 2.62492 2.74578 2.98628 3.19576 3.51811 3.58057 3.68425 3.75349 3.81787 3.91947 4.13802 4.18400 4.20827 4.27988 4.28976 4.31479 4.40768 4.63265 4.64781 4.69879 4.74169 4.80666 4.93314 4.99992 5.08458 5.14108 5.19559 5.30725 5.34810 5.39745 5.44011 5.59877 5.72893 5.83443 6.02790 6.25639 6.57146 6.79948 7.47533 8.56680 Molecular weight = 366.10amu Principal moments of inertia in cm(-1) A = 0.007756 B = 0.002574 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3609.461235 B =10875.290390 C =14449.522053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.509 3.491 4 O -0.539 6.539 5 C -0.133 4.133 6 C -0.069 4.069 7 C -0.125 4.125 8 C -0.043 4.043 9 C -0.019 4.019 10 C -0.041 4.041 11 O -0.217 6.217 12 C 0.177 3.823 13 C -0.263 4.263 14 C 0.186 3.814 15 O -0.189 6.189 16 C -0.420 4.420 17 H 0.110 0.890 18 C -0.006 4.006 19 N -0.898 5.898 20 Si 1.015 2.985 21 H -0.262 1.262 22 H -0.268 1.268 23 H -0.254 1.254 24 C -0.217 4.217 25 C 0.037 3.963 26 C -0.363 4.363 27 C 0.423 3.577 28 O -0.460 6.460 29 C -0.092 4.092 30 C -0.056 4.056 31 H 0.061 0.939 32 H 0.139 0.861 33 H 0.061 0.939 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.200 0.800 37 H 0.137 0.863 38 H 0.280 0.720 39 H 0.143 0.857 40 H 0.159 0.841 41 H 0.181 0.819 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.139 -24.466 -3.433 27.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.356 3.644 4 O -0.431 6.431 5 C -0.134 4.134 6 C -0.087 4.087 7 C -0.142 4.142 8 C -0.043 4.043 9 C -0.037 4.037 10 C -0.085 4.085 11 O -0.126 6.126 12 C 0.132 3.868 13 C -0.283 4.283 14 C 0.131 3.869 15 O -0.091 6.091 16 C -0.495 4.495 17 H 0.127 0.873 18 C -0.208 4.208 19 N -0.532 5.532 20 Si 0.834 3.166 21 H -0.186 1.186 22 H -0.192 1.192 23 H -0.177 1.177 24 C -0.236 4.236 25 C 0.019 3.981 26 C -0.365 4.365 27 C 0.308 3.692 28 O -0.341 6.341 29 C -0.109 4.109 30 C -0.074 4.074 31 H 0.080 0.920 32 H 0.157 0.843 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.155 0.845 36 H 0.217 0.783 37 H 0.155 0.845 38 H 0.090 0.910 39 H 0.161 0.839 40 H 0.177 0.823 41 H 0.198 0.802 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.974 -24.111 -3.419 26.711 hybrid contribution -0.905 1.394 0.212 1.675 sum -11.879 -22.717 -3.207 25.835 Atomic orbital electron populations 1.23619 0.74185 1.06109 1.02552 1.86522 1.25254 1.31162 1.83729 1.21439 0.89506 0.81613 0.71889 1.90842 1.67573 1.37282 1.47376 1.19351 0.88851 0.95663 1.09560 1.21068 0.94552 0.97210 0.95876 1.21799 0.93510 0.99607 0.99312 1.19329 0.92031 0.94280 0.98706 1.22318 0.92972 0.93751 0.94682 1.22190 0.92687 0.86478 1.07155 1.84387 1.33497 1.14609 1.80074 1.19240 0.87321 0.88394 0.91870 1.19924 1.00762 0.89259 1.18394 1.19592 0.93903 0.83751 0.89683 1.83942 1.31196 1.18600 1.75379 1.21977 0.81247 0.96868 1.49432 0.87324 1.26594 1.04901 0.94704 0.94606 1.70098 1.34005 1.06872 1.42245 0.84629 0.74117 0.78127 0.79764 1.18650 1.19205 1.17706 1.20185 0.94822 0.96267 1.12363 1.20207 0.98128 0.90202 0.89569 1.20736 0.95058 0.96646 1.24085 1.20483 0.88010 0.87397 0.73323 1.90644 1.48326 1.54596 1.40487 1.21614 0.94414 0.97280 0.97633 1.21555 0.93832 0.98087 0.93937 0.91994 0.84294 0.92058 0.85396 0.84536 0.78273 0.84509 0.91032 0.83884 0.82308 0.80191 0.81203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.57 113.37 1.20 1.51 16 2 O -0.35 -5.74 9.80 -56.34 -0.55 -6.29 16 3 C 0.51 11.26 7.89 70.32 0.56 11.81 16 4 O -0.54 -15.45 16.12 19.90 0.32 -15.13 16 5 C -0.13 -2.70 5.88 -20.03 -0.12 -2.81 16 6 C -0.07 -1.63 9.55 22.37 0.21 -1.42 16 7 C -0.12 -2.99 9.20 22.44 0.21 -2.78 16 8 C -0.04 -0.82 5.87 -20.12 -0.12 -0.93 16 9 C -0.02 -0.36 9.89 23.94 0.24 -0.12 16 10 C -0.04 -1.13 6.83 24.08 0.16 -0.97 16 11 O -0.22 -7.05 7.12 -20.61 -0.15 -7.20 16 12 C 0.18 6.62 7.27 22.96 0.17 6.78 16 13 C -0.26 -11.12 9.14 22.54 0.21 -10.92 16 14 C 0.19 8.51 6.65 22.67 0.15 8.66 16 15 O -0.19 -10.28 9.74 -19.74 -0.19 -10.48 16 16 C -0.42 -22.44 9.43 67.95 0.64 -21.80 16 17 H 0.11 5.35 5.26 -2.91 -0.02 5.33 16 18 C -0.01 -0.34 5.50 84.88 0.47 0.13 16 19 N -0.90 -50.67 13.67 21.63 0.30 -50.38 16 20 Si 1.01 39.90 29.55 68.60 2.03 41.92 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 22 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 24 C -0.22 -8.39 9.93 22.15 0.22 -8.17 16 25 C 0.04 1.26 10.04 22.21 0.22 1.48 16 26 C -0.36 -12.88 6.34 -20.00 -0.13 -13.00 16 27 C 0.42 13.55 7.81 27.09 0.21 13.76 16 28 O -0.46 -15.39 18.06 -4.77 -0.09 -15.48 16 29 C -0.09 -1.11 9.76 22.44 0.22 -0.90 16 30 C -0.06 -0.76 9.57 22.38 0.21 -0.54 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.13 3.24 7.63 -2.91 -0.02 3.22 16 35 H 0.14 3.80 4.92 -2.91 -0.01 3.79 16 36 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.14 5.82 5.67 -2.91 -0.02 5.80 16 38 H 0.28 14.44 8.31 -92.70 -0.77 13.67 16 39 H 0.14 5.12 8.06 -2.91 -0.02 5.09 16 40 H 0.16 4.32 8.06 -2.91 -0.02 4.29 16 41 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 42 H 0.17 1.31 7.59 -2.91 -0.02 1.29 16 Total: -1.00 -70.82 378.53 7.71 -63.12 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 1.11 Total: 20.15 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 4.93 Total: -20.24 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.30 Total: -50.38 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -0.66 Total: -54.58 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.92 kcal Total: -70.82 7.71 -63.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005157000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.640 kcal (2) G-P(sol) polarization free energy of solvation -70.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds