Wall clock time and date at job start Tue Mar 31 2020 05:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 120.00189 * 2 1 4 4 C 1.38208 * 119.99806 * 180.23101 * 3 2 1 5 5 C 1.38257 * 120.00501 * 359.80984 * 4 3 2 6 6 C 1.38219 * 119.99575 * 359.97438 * 5 4 3 7 7 C 1.38216 * 120.00108 * 179.78690 * 2 1 3 8 8 C 1.50699 * 119.99646 * 0.02562 * 7 2 1 9 9 S 1.81402 * 109.47023 * 269.72344 * 8 7 2 10 10 C 1.81407 * 102.99891 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.46854 * 180.02562 * 10 9 8 12 12 N 1.29831 * 118.35414 * 359.72809 * 11 10 9 13 13 C 1.35629 * 121.62495 * 179.76844 * 12 11 10 14 14 C 1.39635 * 121.62041 * 180.27641 * 13 12 11 15 15 C 1.37719 * 119.69365 * 180.19492 * 14 13 12 16 16 C 1.38871 * 120.82578 * 359.97438 * 15 14 13 17 17 C 1.37789 * 120.57284 * 0.02562 * 16 15 14 18 18 C 1.39378 * 119.51963 * 359.97438 * 17 16 15 19 19 C 1.46962 * 121.91045 * 180.02562 * 18 17 16 20 20 O 1.21717 * 121.28189 * 359.97438 * 19 18 17 21 21 N 1.35340 * 117.42465 * 179.97438 * 19 18 17 22 22 C 1.37103 * 119.71210 * 180.02562 * 21 19 18 23 23 H 1.07999 * 120.00115 * 138.86884 * 22 21 19 24 24 C 1.39072 * 120.00106 * 318.86314 * 22 21 19 25 25 N 1.31262 * 119.99911 * 340.41153 * 24 22 21 26 26 Si 1.86801 * 119.99951 * 160.41539 * 24 22 21 27 27 H 1.48502 * 109.47259 * 90.00405 * 26 24 22 28 28 H 1.48511 * 109.46937 * 209.99922 * 26 24 22 29 29 H 1.48494 * 109.47110 * 329.99659 * 26 24 22 30 30 H 1.08999 * 109.46957 * 270.21426 * 1 2 3 31 31 H 1.08999 * 109.46675 * 30.21273 * 1 2 3 32 32 H 1.09002 * 109.47059 * 150.20818 * 1 2 3 33 33 H 1.07999 * 119.99721 * 0.06386 * 3 2 1 34 34 H 1.08002 * 119.99763 * 179.83284 * 4 3 2 35 35 H 1.08004 * 120.00041 * 180.02562 * 5 4 3 36 36 H 1.07998 * 119.99649 * 179.97438 * 6 5 4 37 37 H 1.08995 * 109.47261 * 29.72642 * 8 7 2 38 38 H 1.09010 * 109.46889 * 149.72586 * 8 7 2 39 39 H 1.08997 * 109.46680 * 300.00293 * 10 9 8 40 40 H 1.09003 * 109.47095 * 60.00242 * 10 9 8 41 41 H 1.08002 * 120.15613 * 0.17745 * 14 13 12 42 42 H 1.07998 * 119.58411 * 179.97438 * 15 14 13 43 43 H 1.08002 * 119.71348 * 179.97438 * 16 15 14 44 44 H 1.08000 * 120.24419 * 180.02562 * 17 16 15 45 45 H 0.97005 * 119.99447 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2718 -0.0001 -0.0057 6 6 3.5806 -1.1970 -0.0012 7 6 2.1981 -1.1970 0.0045 8 6 1.4446 -2.5020 0.0087 9 16 1.1487 -3.0238 1.7207 10 6 0.2473 -4.5854 1.5214 11 6 -0.0776 -5.1545 2.8783 12 7 0.3092 -4.4994 3.9304 13 6 0.0483 -4.9483 5.1834 14 6 0.4594 -4.2408 6.3149 15 6 0.1768 -4.7353 7.5687 16 6 -0.5135 -5.9304 7.7234 17 6 -0.9297 -6.6469 6.6224 18 6 -0.6539 -6.1640 5.3444 19 6 -1.0735 -6.8848 4.1344 20 8 -1.6809 -7.9372 4.2043 21 7 -0.7583 -6.3331 2.9394 22 6 -1.1274 -6.9656 1.7803 23 1 -1.5083 -6.3908 0.9492 24 6 -1.0112 -8.3475 1.6749 25 7 -0.2175 -9.0034 2.4891 26 14 -1.9846 -9.2701 0.3746 27 1 -1.1849 -9.3568 -0.8737 28 1 -2.2896 -10.6390 0.8632 29 1 -3.2531 -8.5482 0.1009 30 1 -0.3633 0.0038 1.0277 31 1 -0.3633 0.8881 -0.5171 32 1 -0.3633 -0.8919 -0.5106 33 1 1.6584 2.1326 0.0010 34 1 4.1205 2.1326 -0.0076 35 1 5.3518 0.0000 -0.0090 36 1 4.1206 -2.1323 -0.0023 37 1 0.4903 -2.3722 -0.5017 38 1 2.0318 -3.2623 -0.5065 39 1 -0.6770 -4.4038 0.9730 40 1 0.8648 -5.2933 0.9684 41 1 0.9968 -3.3102 6.2073 42 1 0.4959 -4.1869 8.4426 43 1 -0.7252 -6.3019 8.7152 44 1 -1.4665 -7.5755 6.7489 45 1 -0.1368 -9.9673 2.4157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005368101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:38 Heat of formation + Delta-G solvation = 26.368841 kcal Electronic energy + Delta-G solvation = -29221.206572 eV Core-core repulsion = 25294.019594 eV Total energy + Delta-G solvation = -3927.186978 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.114 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.24624 -40.31154 -39.26648 -38.25039 -35.61003 -34.23150 -33.78180 -32.97037 -32.38256 -31.86735 -29.22623 -28.40368 -27.67687 -27.22179 -24.82504 -23.81992 -22.90941 -22.65506 -21.60124 -20.57147 -19.63272 -18.73095 -17.62716 -17.31956 -16.91668 -16.69927 -16.60818 -16.40653 -16.06440 -15.83674 -15.63613 -15.41249 -15.01550 -14.98514 -14.70045 -14.42779 -14.03785 -13.99815 -13.94699 -13.76072 -13.68615 -13.48762 -13.19747 -13.00427 -12.87245 -12.73534 -12.66053 -12.51943 -12.48287 -12.22918 -11.81335 -11.76452 -11.38491 -10.98419 -10.83905 -10.56702 -10.24792 -9.94995 -9.61280 -9.38153 -8.85571 -8.58558 -8.45502 -6.52581 -0.17191 0.04855 0.09652 0.55099 0.96773 1.31944 1.39344 1.46037 1.49597 1.77516 2.01714 2.22369 2.52865 2.84549 2.98555 3.13418 3.32980 3.74618 3.77008 3.86864 3.90717 4.11482 4.13068 4.16394 4.19647 4.20848 4.34245 4.44584 4.49805 4.55020 4.57785 4.62091 4.77311 4.90450 4.91630 4.93215 5.01507 5.11347 5.14951 5.20929 5.33139 5.39844 5.49507 5.53407 5.62949 5.67402 5.73576 5.78833 5.96779 6.18099 6.23551 6.55708 6.79859 7.29346 7.56788 8.42268 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.003105 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.322568 B = 9015.770957 C =11411.850200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.080 4.080 3 C -0.131 4.131 4 C -0.117 4.117 5 C -0.135 4.135 6 C -0.113 4.113 7 C -0.083 4.083 8 C -0.069 4.069 9 S -0.184 6.184 10 C -0.027 4.027 11 C 0.362 3.638 12 N -0.546 5.546 13 C 0.138 3.862 14 C -0.127 4.127 15 C -0.070 4.070 16 C -0.147 4.147 17 C -0.066 4.066 18 C -0.237 4.237 19 C 0.497 3.503 20 O -0.548 6.548 21 N -0.366 5.366 22 C -0.404 4.404 23 H 0.126 0.874 24 C 0.031 3.969 25 N -0.848 5.848 26 Si 0.994 3.006 27 H -0.249 1.249 28 H -0.288 1.288 29 H -0.256 1.256 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.147 0.853 42 H 0.173 0.827 43 H 0.161 0.839 44 H 0.113 0.887 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.511 17.903 -3.785 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.082 4.082 3 C -0.149 4.149 4 C -0.136 4.136 5 C -0.153 4.153 6 C -0.133 4.133 7 C -0.085 4.085 8 C -0.216 4.216 9 S 0.045 5.955 10 C -0.177 4.177 11 C 0.098 3.902 12 N -0.272 5.272 13 C 0.024 3.976 14 C -0.146 4.146 15 C -0.089 4.089 16 C -0.166 4.166 17 C -0.086 4.086 18 C -0.244 4.244 19 C 0.293 3.707 20 O -0.426 6.426 21 N -0.070 5.070 22 C -0.530 4.530 23 H 0.143 0.857 24 C -0.180 4.180 25 N -0.478 5.478 26 Si 0.815 3.185 27 H -0.173 1.173 28 H -0.214 1.214 29 H -0.179 1.179 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.144 0.856 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.165 0.835 42 H 0.191 0.809 43 H 0.178 0.822 44 H 0.131 0.869 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.869 18.157 -2.682 19.270 hybrid contribution -1.211 -2.753 -1.436 3.333 sum 4.658 15.404 -4.118 16.611 Atomic orbital electron populations 1.20889 0.90383 1.03344 1.02816 1.20021 0.96965 0.92618 0.98548 1.21302 0.94774 0.97739 1.01051 1.21484 0.94400 0.98891 0.98841 1.21386 1.00952 0.92189 1.00752 1.21243 0.93413 0.99277 0.99354 1.19142 0.93796 0.92787 1.02745 1.22553 1.03983 0.97899 0.97202 1.87685 1.74098 1.24369 1.09362 1.22131 1.04356 0.98430 0.92749 1.22624 0.86928 0.85017 0.95664 1.68341 1.28493 1.33782 0.96624 1.19206 0.94496 0.91273 0.92644 1.21016 1.02503 1.00937 0.90165 1.21585 0.95005 0.94967 0.97368 1.21380 1.00680 0.96043 0.98448 1.21032 0.97441 0.98984 0.91146 1.20994 1.09099 0.99374 0.94971 1.18823 0.81740 0.86119 0.83996 1.90590 1.42608 1.23168 1.86265 1.42354 1.39102 1.17442 1.08137 1.20037 1.47636 0.91952 0.93416 0.85678 1.26439 0.94341 0.97878 0.99384 1.69936 1.30764 1.09836 1.37235 0.84967 0.79232 0.76899 0.77411 1.17275 1.21422 1.17933 0.91136 0.90021 0.91311 0.84114 0.83724 0.84198 0.85620 0.87961 0.88879 0.86635 0.87354 0.83496 0.80944 0.82185 0.86893 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 9.60 71.24 0.68 -1.46 16 2 C -0.08 -1.67 5.88 -19.86 -0.12 -1.78 16 3 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 4 C -0.12 -1.95 10.05 22.27 0.22 -1.73 16 5 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 6 C -0.11 -2.45 9.70 22.27 0.22 -2.23 16 7 C -0.08 -1.91 5.14 -19.87 -0.10 -2.02 16 8 C -0.07 -1.64 5.67 71.24 0.40 -1.23 16 9 S -0.18 -5.83 20.62 -56.49 -1.17 -6.99 16 10 C -0.03 -0.99 5.06 71.23 0.36 -0.63 16 11 C 0.36 16.69 7.49 137.93 1.03 17.72 16 12 N -0.55 -24.59 8.78 -179.54 -1.58 -26.16 16 13 C 0.14 6.15 6.63 39.65 0.26 6.41 16 14 C -0.13 -4.38 10.03 22.48 0.23 -4.15 16 15 C -0.07 -1.94 10.00 22.30 0.22 -1.72 16 16 C -0.15 -4.52 10.02 22.32 0.22 -4.29 16 17 C -0.07 -2.77 9.68 22.44 0.22 -2.56 16 18 C -0.24 -11.68 5.89 -19.96 -0.12 -11.79 16 19 C 0.50 28.35 6.93 86.44 0.60 28.95 16 20 O -0.55 -34.42 14.27 -4.40 -0.06 -34.48 16 21 N -0.37 -19.43 2.68 -460.26 -1.23 -20.67 16 22 C -0.40 -20.97 8.24 84.07 0.69 -20.27 16 23 H 0.13 5.71 7.07 -2.91 -0.02 5.69 16 24 C 0.03 1.66 4.36 84.98 0.37 2.03 16 25 N -0.85 -49.49 11.54 21.68 0.25 -49.24 16 26 Si 0.99 41.11 29.60 68.60 2.03 43.14 16 27 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 28 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 29 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 32 H 0.07 1.23 5.94 -2.39 -0.01 1.21 16 33 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.10 2.14 5.94 -2.39 -0.01 2.13 16 38 H 0.09 2.06 8.09 -2.39 -0.02 2.04 16 39 H 0.12 3.76 7.58 -2.39 -0.02 3.74 16 40 H 0.11 3.93 8.05 -2.39 -0.02 3.91 16 41 H 0.15 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 43 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 44 H 0.11 4.85 7.83 -2.91 -0.02 4.83 16 45 H 0.28 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -74.81 390.37 5.10 -69.71 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 1.02 Total: 29.82 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 5.84 Total: -5.11 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -2.56 Total: -96.07 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.06 Total: -34.48 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: -5.83 SS G_CDS: -1.17 Total: -6.99 kcal Total: -74.81 5.10 -69.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005368101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.075 kcal (2) G-P(sol) polarization free energy of solvation -74.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds