Wall clock time and date at job start Tue Mar 31 2020 05:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50704 * 119.99661 * 2 1 4 4 C 1.50698 * 109.46898 * 95.53063 * 3 2 1 5 5 O 1.21287 * 120.00266 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00055 * 179.97438 * 4 3 2 7 7 C 1.39957 * 120.00129 * 184.45779 * 6 4 3 8 8 C 1.38861 * 120.05988 * 324.58967 * 7 6 4 9 9 C 1.38111 * 119.93745 * 179.76831 * 8 7 6 10 10 C 1.38360 * 120.06006 * 0.50874 * 9 8 7 11 11 Br 1.89101 * 119.94205 * 179.72705 * 10 9 8 12 12 C 1.38366 * 120.12088 * 359.74164 * 10 9 8 13 13 C 1.38104 * 120.05718 * 0.02562 * 12 10 9 14 14 N 1.28043 * 119.99936 * 179.97438 * 2 1 3 15 15 N 1.40105 * 119.99859 * 175.18491 * 14 2 1 16 16 C 1.34773 * 119.99949 * 185.18382 * 15 14 2 17 17 O 1.21786 * 120.00231 * 0.02562 * 16 15 14 18 18 C 1.41747 * 119.99831 * 180.02562 * 16 15 14 19 19 H 1.07995 * 120.00237 * 0.02562 * 18 16 15 20 20 C 1.40182 * 119.99520 * 180.02562 * 18 16 15 21 21 N 1.30604 * 120.00473 * 359.97438 * 20 18 16 22 22 Si 1.86809 * 119.99517 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46782 * 60.00021 * 22 20 18 24 24 H 1.48505 * 109.46915 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47063 * 300.00075 * 22 20 18 26 26 H 1.09006 * 109.46990 * 89.99733 * 1 2 3 27 27 H 1.08995 * 109.46976 * 210.00061 * 1 2 3 28 28 H 1.08999 * 109.47245 * 330.00409 * 1 2 3 29 29 H 1.08994 * 109.47439 * 335.52190 * 3 2 1 30 30 H 1.09003 * 109.46733 * 215.52106 * 3 2 1 31 31 H 0.97001 * 119.99725 * 4.73440 * 6 4 3 32 32 H 1.08001 * 120.03319 * 0.02562 * 8 7 6 33 33 H 1.08003 * 119.97414 * 180.25450 * 9 8 7 34 34 H 1.07998 * 119.96622 * 179.97438 * 12 10 9 35 35 H 1.08006 * 120.02935 * 179.97438 * 13 12 10 36 36 H 0.96998 * 120.00253 * 5.18578 * 15 14 2 37 37 H 0.96998 * 120.00303 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.6301 1.6717 1.4142 5 8 2.3127 0.9449 2.3318 6 7 3.3136 2.8072 1.6594 7 6 3.7382 3.1015 2.9601 8 6 2.9484 2.7483 4.0462 9 6 3.3720 3.0357 5.3289 10 6 4.5773 3.6841 5.5318 11 35 5.1505 4.0828 7.2892 12 6 5.3639 4.0418 4.4511 13 6 4.9473 3.7526 3.1666 14 7 2.1472 -1.1089 0.0005 15 7 3.5445 -1.1111 -0.1014 16 6 4.2107 -2.2779 -0.2061 17 8 3.5981 -3.3305 -0.2127 18 6 5.6245 -2.2801 -0.3086 19 1 6.1678 -1.3468 -0.3023 20 6 6.3173 -3.4938 -0.4181 21 7 5.6603 -4.6226 -0.4252 22 14 8.1805 -3.4967 -0.5539 23 1 8.7656 -2.8570 0.6518 24 1 8.6671 -4.8960 -0.6568 25 1 8.5897 -2.7394 -1.7640 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6322 2.0874 -0.4258 30 1 3.1665 1.2016 -0.5971 31 1 3.5078 3.4224 0.9349 32 1 2.0056 2.2458 3.8883 33 1 2.7601 2.7576 6.1743 34 1 6.3040 4.5482 4.6123 35 1 5.5614 4.0323 2.3233 36 1 4.0325 -0.2728 -0.0964 37 1 6.1397 -5.4623 -0.5014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005369476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:41 Heat of formation + Delta-G solvation = 0.429894 kcal Electronic energy + Delta-G solvation = -23799.207694 eV Core-core repulsion = 20010.023508 eV Total energy + Delta-G solvation = -3789.184187 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 367.032 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.80648 -38.95398 -37.70292 -36.00102 -35.03779 -32.78506 -32.04231 -31.73353 -31.31574 -29.72432 -28.23567 -27.75384 -26.00501 -23.42728 -22.68410 -20.87947 -20.56230 -18.85456 -18.10413 -17.36152 -17.24378 -16.28711 -16.01387 -15.55139 -15.47040 -14.84138 -14.57293 -14.18146 -14.09364 -13.74427 -13.50278 -13.18040 -13.04429 -12.71053 -12.58835 -12.17116 -12.09174 -11.84625 -11.67139 -11.35573 -11.28502 -11.18120 -10.62386 -10.54568 -10.48802 -10.39048 -10.18861 -9.91809 -9.39568 -9.25919 -8.96065 -8.34271 -7.72708 -7.49369 -6.35519 -4.90033 0.78131 1.07353 1.42909 2.38759 2.48840 3.01844 3.09922 3.11850 3.14229 3.41870 3.77691 4.13158 4.45523 4.49638 4.64082 4.64245 4.79939 4.98895 5.01465 5.15108 5.21557 5.28046 5.64118 5.70417 5.72554 5.78603 5.92921 5.93444 5.99203 6.01625 6.15301 6.45453 6.64650 6.82233 7.09869 7.23980 7.84093 7.93831 8.02414 8.77775 8.81105 9.33511 10.44244 10.69102 Molecular weight = 367.03amu Principal moments of inertia in cm(-1) A = 0.009316 B = 0.002572 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.894121 B =10885.803870 C =13013.950710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.032 3.968 3 C -0.131 4.131 4 C 0.515 3.485 5 O -0.494 6.494 6 N -0.679 5.679 7 C 0.168 3.832 8 C -0.116 4.116 9 C -0.071 4.071 10 C -0.109 4.109 11 Br -0.057 7.057 12 C -0.072 4.072 13 C -0.141 4.141 14 N -0.183 5.183 15 N -0.593 5.593 16 C 0.561 3.439 17 O -0.551 6.551 18 C -0.540 4.540 19 H 0.067 0.933 20 C 0.089 3.911 21 N -0.748 5.748 22 Si 0.915 3.085 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.266 1.266 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.413 0.587 32 H 0.148 0.852 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.362 0.638 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.259 24.451 8.523 25.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.163 4.163 3 C -0.174 4.174 4 C 0.302 3.698 5 O -0.366 6.366 6 N -0.325 5.325 7 C 0.073 3.927 8 C -0.137 4.137 9 C -0.091 4.091 10 C -0.189 4.189 11 Br 0.028 6.972 12 C -0.092 4.092 13 C -0.163 4.163 14 N 0.009 4.991 15 N -0.340 5.340 16 C 0.369 3.631 17 O -0.429 6.429 18 C -0.577 4.577 19 H 0.086 0.914 20 C -0.134 4.134 21 N -0.376 5.376 22 Si 0.739 3.261 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.190 1.190 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.249 0.751 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.198 0.802 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.687 21.943 9.789 24.177 hybrid contribution 1.564 1.581 -0.791 2.361 sum -1.123 23.524 8.997 25.211 Atomic orbital electron populations 1.20358 0.88307 1.02881 1.02069 1.23989 0.96811 0.88208 1.07309 1.21120 1.02987 0.99870 0.93459 1.20918 0.77085 0.79765 0.92063 1.90778 1.50440 1.49532 1.45863 1.43657 1.57090 1.23364 1.08430 1.17877 0.92894 0.97027 0.84886 1.21340 1.00987 1.00656 0.90743 1.21036 0.94462 0.96030 0.97595 1.21737 0.98978 1.07205 0.90997 1.96697 1.90198 1.93781 1.16532 1.20873 0.99067 0.98511 0.90742 1.20925 0.94769 1.03071 0.97499 1.73964 0.95325 1.24965 1.04835 1.47971 0.99002 1.10472 1.76566 1.17018 0.87562 0.80596 0.77935 1.90666 1.69063 1.29507 1.53697 1.19877 0.90136 0.93985 1.53683 0.91427 1.25735 1.00412 0.94737 0.92530 1.69993 1.37133 0.98254 1.32182 0.86309 0.82059 0.78117 0.79626 1.19048 1.20205 1.19026 0.91184 0.90756 0.91725 0.86979 0.88019 0.75116 0.83415 0.84710 0.84669 0.84651 0.80215 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.20 36.01 0.37 -0.63 16 2 C 0.03 0.53 5.69 -78.90 -0.45 0.08 16 3 C -0.13 -1.57 5.25 -29.03 -0.15 -1.72 16 4 C 0.52 6.89 7.63 -10.98 -0.08 6.80 16 5 O -0.49 -8.87 13.50 5.55 0.07 -8.79 16 6 N -0.68 -6.70 5.34 -9.86 -0.05 -6.75 16 7 C 0.17 1.89 6.29 -83.68 -0.53 1.37 16 8 C -0.12 -1.44 8.69 -39.40 -0.34 -1.78 16 9 C -0.07 -0.80 9.78 -39.58 -0.39 -1.19 16 10 C -0.11 -1.17 6.23 -39.49 -0.25 -1.42 16 11 Br -0.06 -0.56 33.70 -68.01 -2.29 -2.85 16 12 C -0.07 -0.69 9.78 -39.58 -0.39 -1.08 16 13 C -0.14 -1.35 9.97 -39.40 -0.39 -1.74 16 14 N -0.18 -4.18 10.95 35.61 0.39 -3.79 16 15 N -0.59 -14.45 6.08 29.13 0.18 -14.27 16 16 C 0.56 16.74 7.69 -14.92 -0.11 16.63 16 17 O -0.55 -18.85 15.22 5.11 0.08 -18.77 16 18 C -0.54 -15.28 9.31 -37.51 -0.35 -15.62 16 19 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 20 C 0.09 2.46 5.50 -17.34 -0.10 2.37 16 21 N -0.75 -22.37 11.73 55.56 0.65 -21.72 16 22 Si 0.92 19.72 29.56 -169.99 -5.02 14.70 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.11 0.84 8.09 -51.93 -0.42 0.42 16 30 H 0.10 1.18 6.50 -51.93 -0.34 0.84 16 31 H 0.41 2.42 8.82 -40.82 -0.36 2.06 16 32 H 0.15 2.00 6.25 -52.49 -0.33 1.67 16 33 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.36 7.48 6.40 -182.60 -1.17 6.32 16 37 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 LS Contribution 350.18 15.07 5.28 5.28 Total: -1.00 -39.12 350.18 -8.58 -47.69 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.70 Total: 7.22 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -3.16 Total: 2.06 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 1.17 Total: -46.53 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: 0.15 Total: -27.56 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.29 Total: -2.85 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -39.12 -8.58 -47.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005369476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.121 kcal (2) G-P(sol) polarization free energy of solvation -39.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds