Wall clock time and date at job start Tue Mar 31 2020 05:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 N 1.46498 * 109.46726 * 174.99859 * 4 2 1 6 6 C 1.36575 * 119.74153 * 269.72084 * 5 4 2 7 7 S 1.76208 * 118.46096 * 0.02584 * 6 5 4 8 8 C 1.80999 * 99.99787 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46897 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46744 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00367 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99622 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00194 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99691 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47133 * 90.00026 * 14 12 10 16 16 H 1.48499 * 109.47044 * 209.99742 * 14 12 10 17 17 H 1.48496 * 109.47266 * 329.99806 * 14 12 10 18 18 N 1.31012 * 123.07424 * 179.73092 * 6 5 4 19 19 C 1.35399 * 121.53016 * 0.55556 * 18 6 5 20 20 C 1.39777 * 121.55828 * 179.71561 * 19 18 6 21 21 C 1.36594 * 119.81961 * 180.02562 * 20 19 18 22 22 C 1.39022 * 120.96415 * 359.97438 * 21 20 19 23 23 Cl 1.73596 * 119.71855 * 180.02562 * 22 21 20 24 24 C 1.37841 * 120.55765 * 359.97438 * 22 21 20 25 25 C 1.39434 * 119.39790 * 0.02562 * 24 22 21 26 26 C 1.35316 * 119.74214 * 89.99894 * 5 4 2 27 27 O 1.21735 * 121.21738 * 359.95826 * 26 5 4 28 28 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 29 29 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 30 30 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47160 * 239.99666 * 2 1 3 32 32 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 33 33 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 34 34 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.46794 * 294.99833 * 4 2 1 36 36 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 37 37 H 1.09002 * 109.47186 * 299.99739 * 8 7 6 38 38 H 1.08997 * 109.47273 * 59.99936 * 8 7 6 39 39 H 1.08994 * 109.46761 * 299.99475 * 9 8 7 40 40 H 1.08997 * 109.47344 * 59.99817 * 9 8 7 41 41 H 0.97000 * 119.99952 * 179.97438 * 13 12 10 42 42 H 1.07998 * 120.08795 * 359.97438 * 20 19 18 43 43 H 1.07996 * 119.51730 * 180.02562 * 21 20 19 44 44 H 1.08003 * 120.30079 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8265 1.1907 6 6 4.0777 -1.9181 0.6078 7 16 3.0293 -3.1684 -0.0575 8 6 4.2749 -4.3260 -0.6774 9 6 3.5794 -5.5285 -1.3185 10 6 4.6166 -6.4921 -1.8352 11 1 5.6667 -6.2693 -1.7176 12 6 4.2247 -7.6587 -2.4571 13 7 2.9459 -7.9307 -2.5989 14 14 5.5103 -8.8533 -3.0968 15 1 5.8531 -9.8291 -2.0312 16 1 4.9702 -9.5772 -4.2756 17 1 6.7295 -8.1035 -3.4923 18 7 5.3749 -2.0766 0.5152 19 6 6.2376 -1.1576 1.0096 20 6 7.6217 -1.3289 0.9163 21 6 8.4596 -0.3792 1.4279 22 6 7.9570 0.7618 2.0430 23 17 9.0515 1.9484 2.6814 24 6 6.5970 0.9593 2.1492 25 6 5.7240 0.0021 1.6335 26 6 4.2655 0.1560 1.7194 27 8 3.7640 1.1325 2.2457 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.7515 -0.1583 2.1370 36 1 1.6052 -1.7198 1.2952 37 1 4.8964 -3.8272 -1.4211 38 1 4.8992 -4.6651 0.1493 39 1 2.9577 -6.0275 -0.5752 40 1 2.9554 -5.1891 -2.1453 41 1 2.6702 -8.7512 -3.0368 42 1 8.0274 -2.2101 0.4418 43 1 9.5282 -0.5163 1.3528 44 1 6.2110 1.8474 2.6274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005449754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:51 Heat of formation + Delta-G solvation = -15.094324 kcal Electronic energy + Delta-G solvation = -27855.268881 eV Core-core repulsion = 23923.851076 eV Total energy + Delta-G solvation = -3931.417805 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 366.091 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78211 -39.08845 -37.66780 -36.86964 -35.97081 -33.90882 -33.47668 -31.68267 -31.06567 -30.01014 -27.45017 -27.19039 -25.50318 -25.05895 -24.00653 -22.31101 -21.39520 -20.63075 -19.19586 -19.01766 -17.74269 -16.68222 -16.49288 -16.26043 -15.95483 -15.55474 -15.05649 -14.81371 -14.57966 -14.27241 -14.18507 -14.01991 -13.80674 -13.48457 -13.25348 -13.16809 -12.75722 -12.49065 -12.34298 -12.29727 -12.17598 -12.01285 -11.80527 -11.31994 -11.26831 -11.15792 -11.08873 -10.96446 -10.75703 -10.51108 -10.38209 -10.19923 -10.05298 -9.92141 -9.77183 -9.49567 -9.27452 -8.62824 -8.51558 -7.56215 -6.16683 -4.21143 0.17885 0.53969 1.09265 1.84514 1.90475 2.24682 2.44296 2.59192 3.24447 3.31404 3.34599 3.68733 3.94597 4.13394 4.34709 4.45862 4.51782 4.60564 4.71554 4.80643 4.96447 5.02355 5.20036 5.20388 5.26456 5.45018 5.51482 5.53586 5.60667 5.66863 5.73482 5.74878 5.88233 5.88535 5.91453 5.94975 6.08351 6.09505 6.17892 6.30636 6.41271 6.57005 7.36932 7.42449 7.49290 7.58777 7.78671 8.14135 8.83358 9.43782 10.94162 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.008289 B = 0.002991 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3377.352656 B = 9360.400038 C =12474.546110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C -0.142 4.142 4 C 0.093 3.907 5 N -0.526 5.526 6 C 0.379 3.621 7 S -0.021 6.021 8 C -0.078 4.078 9 C 0.034 3.966 10 C -0.519 4.519 11 H 0.061 0.939 12 C 0.061 3.939 13 N -0.892 5.892 14 Si 0.898 3.102 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 N -0.533 5.533 19 C 0.188 3.812 20 C -0.104 4.104 21 C -0.061 4.061 22 C -0.071 4.071 23 Cl -0.068 7.068 24 C -0.024 4.024 25 C -0.205 4.205 26 C 0.558 3.442 27 O -0.507 6.507 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.027 0.973 40 H 0.028 0.972 41 H 0.264 0.736 42 H 0.150 0.850 43 H 0.142 0.858 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 17.781 8.294 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 C -0.199 4.199 4 C -0.029 4.029 5 N -0.249 5.249 6 C 0.008 3.992 7 S 0.218 5.782 8 C -0.226 4.226 9 C -0.005 4.005 10 C -0.559 4.559 11 H 0.080 0.920 12 C -0.142 4.142 13 N -0.530 5.530 14 Si 0.725 3.275 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.197 1.197 18 N -0.260 5.260 19 C 0.072 3.928 20 C -0.125 4.125 21 C -0.081 4.081 22 C -0.099 4.099 23 Cl -0.040 7.040 24 C -0.044 4.044 25 C -0.213 4.213 26 C 0.350 3.650 27 O -0.382 6.382 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.168 0.832 43 H 0.160 0.840 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.373 17.656 8.229 19.528 hybrid contribution 1.878 0.154 0.112 1.887 sum 3.251 17.809 8.341 19.933 Atomic orbital electron populations 1.21743 0.93425 1.02566 1.02298 1.21508 0.96996 0.96960 0.97673 1.21855 1.00819 0.95280 1.01974 1.22242 0.76129 1.03507 1.01033 1.46467 1.09740 1.18256 1.50483 1.25502 0.93784 0.89921 0.90028 1.86117 1.11662 1.14094 1.66363 1.24157 0.97562 0.97177 1.03674 1.19020 0.96333 0.89267 0.95923 1.21022 0.92774 1.03850 1.38254 0.92041 1.25001 0.95459 0.97953 0.95752 1.69949 1.14542 1.25495 1.42995 0.86494 0.81497 0.80967 0.78505 1.20496 1.21114 1.19672 1.69361 0.98586 1.29919 1.28103 1.18941 0.94112 0.88473 0.91241 1.20592 0.90041 1.00427 1.01404 1.20869 1.01051 0.91370 0.94771 1.20691 0.90430 0.93666 1.05077 1.98366 1.63263 1.56851 1.85485 1.20770 0.90397 0.98047 0.95207 1.20383 0.92728 0.98925 1.09291 1.18141 0.86665 0.82095 0.78058 1.90853 1.75125 1.28782 1.43398 0.92405 0.91903 0.91799 0.89904 0.92648 0.91918 0.93417 0.87952 0.87903 0.89129 0.89177 0.95440 0.95410 0.92671 0.83216 0.84020 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.19 37.16 0.34 -0.85 16 2 C -0.11 -1.17 3.13 -90.62 -0.28 -1.45 16 3 C -0.14 -1.57 7.95 37.16 0.30 -1.28 16 4 C 0.09 1.04 4.46 -4.04 -0.02 1.02 16 5 N -0.53 -7.17 2.51 -117.42 -0.29 -7.46 16 6 C 0.38 5.64 7.78 -88.53 -0.69 4.95 16 7 S -0.02 -0.31 19.88 -107.50 -2.14 -2.45 16 8 C -0.08 -1.45 4.72 37.16 0.18 -1.27 16 9 C 0.03 0.79 4.98 -27.88 -0.14 0.65 16 10 C -0.52 -13.50 9.11 -34.44 -0.31 -13.82 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 14 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 18 N -0.53 -8.32 8.98 -10.79 -0.10 -8.41 16 19 C 0.19 2.69 6.63 -84.54 -0.56 2.13 16 20 C -0.10 -1.23 9.98 -39.60 -0.40 -1.63 16 21 C -0.06 -0.62 9.73 -39.88 -0.39 -1.00 16 22 C -0.07 -0.77 6.32 -39.44 -0.25 -1.02 16 23 Cl -0.07 -0.67 28.93 -51.86 -1.50 -2.17 16 24 C -0.02 -0.30 9.45 -39.28 -0.37 -0.67 16 25 C -0.21 -2.88 5.90 -104.76 -0.62 -3.49 16 26 C 0.56 8.12 6.21 -12.51 -0.08 8.04 16 27 O -0.51 -7.81 14.58 5.16 0.08 -7.74 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.70 8.01 -51.93 -0.42 0.28 16 34 H 0.05 0.62 6.06 -51.93 -0.31 0.31 16 35 H 0.10 1.11 7.46 -51.93 -0.39 0.72 16 36 H 0.10 1.07 6.46 -51.93 -0.34 0.74 16 37 H 0.09 1.70 8.09 -51.92 -0.42 1.28 16 38 H 0.09 1.68 8.10 -51.92 -0.42 1.26 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 43 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.14 1.68 7.82 -52.48 -0.41 1.27 16 LS Contribution 391.17 15.07 5.89 5.89 Total: -1.00 -28.42 391.17 -11.78 -40.20 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.05 Total: -0.77 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -3.39 Total: -8.15 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.34 Total: -40.24 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.08 Total: -7.74 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.14 Total: -2.45 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.42 -11.78 -40.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005449754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.104 kcal (2) G-P(sol) polarization free energy of solvation -28.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds