Wall clock time and date at job start Tue Mar 31 2020 05:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 N 1.46498 * 109.46726 * 174.99859 * 4 2 1 6 6 C 1.36575 * 119.74153 * 269.72084 * 5 4 2 7 7 S 1.76208 * 118.46096 * 0.02584 * 6 5 4 8 8 C 1.80999 * 99.99787 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46897 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46744 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00367 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99622 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00194 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99691 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47133 * 90.00026 * 14 12 10 16 16 H 1.48499 * 109.47044 * 209.99742 * 14 12 10 17 17 H 1.48496 * 109.47266 * 329.99806 * 14 12 10 18 18 N 1.31012 * 123.07424 * 179.73092 * 6 5 4 19 19 C 1.35399 * 121.53016 * 0.55556 * 18 6 5 20 20 C 1.39777 * 121.55828 * 179.71561 * 19 18 6 21 21 C 1.36594 * 119.81961 * 180.02562 * 20 19 18 22 22 C 1.39022 * 120.96415 * 359.97438 * 21 20 19 23 23 Cl 1.73596 * 119.71855 * 180.02562 * 22 21 20 24 24 C 1.37841 * 120.55765 * 359.97438 * 22 21 20 25 25 C 1.39434 * 119.39790 * 0.02562 * 24 22 21 26 26 C 1.35316 * 119.74214 * 89.99894 * 5 4 2 27 27 O 1.21735 * 121.21738 * 359.95826 * 26 5 4 28 28 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 29 29 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 30 30 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47160 * 239.99666 * 2 1 3 32 32 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 33 33 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 34 34 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.46794 * 294.99833 * 4 2 1 36 36 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 37 37 H 1.09002 * 109.47186 * 299.99739 * 8 7 6 38 38 H 1.08997 * 109.47273 * 59.99936 * 8 7 6 39 39 H 1.08994 * 109.46761 * 299.99475 * 9 8 7 40 40 H 1.08997 * 109.47344 * 59.99817 * 9 8 7 41 41 H 0.97000 * 119.99952 * 179.97438 * 13 12 10 42 42 H 1.07998 * 120.08795 * 359.97438 * 20 19 18 43 43 H 1.07996 * 119.51730 * 180.02562 * 21 20 19 44 44 H 1.08003 * 120.30079 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8265 1.1907 6 6 4.0777 -1.9181 0.6078 7 16 3.0293 -3.1684 -0.0575 8 6 4.2749 -4.3260 -0.6774 9 6 3.5794 -5.5285 -1.3185 10 6 4.6166 -6.4921 -1.8352 11 1 5.6667 -6.2693 -1.7176 12 6 4.2247 -7.6587 -2.4571 13 7 2.9459 -7.9307 -2.5989 14 14 5.5103 -8.8533 -3.0968 15 1 5.8531 -9.8291 -2.0312 16 1 4.9702 -9.5772 -4.2756 17 1 6.7295 -8.1035 -3.4923 18 7 5.3749 -2.0766 0.5152 19 6 6.2376 -1.1576 1.0096 20 6 7.6217 -1.3289 0.9163 21 6 8.4596 -0.3792 1.4279 22 6 7.9570 0.7618 2.0430 23 17 9.0515 1.9484 2.6814 24 6 6.5970 0.9593 2.1492 25 6 5.7240 0.0021 1.6335 26 6 4.2655 0.1560 1.7194 27 8 3.7640 1.1325 2.2457 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.7515 -0.1583 2.1370 36 1 1.6052 -1.7198 1.2952 37 1 4.8964 -3.8272 -1.4211 38 1 4.8992 -4.6651 0.1493 39 1 2.9577 -6.0275 -0.5752 40 1 2.9554 -5.1891 -2.1453 41 1 2.6702 -8.7512 -3.0368 42 1 8.0274 -2.2101 0.4418 43 1 9.5282 -0.5163 1.3528 44 1 6.2110 1.8474 2.6274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005449754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:50 Heat of formation + Delta-G solvation = -26.500879 kcal Electronic energy + Delta-G solvation = -27855.763507 eV Core-core repulsion = 23923.851076 eV Total energy + Delta-G solvation = -3931.912430 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 366.091 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.84402 -40.06105 -38.76666 -37.75713 -36.87312 -35.77171 -34.53581 -32.90719 -32.63778 -31.07268 -28.38059 -27.99471 -27.32136 -26.20816 -24.99057 -23.48730 -22.97978 -21.50027 -20.30128 -20.05931 -18.79620 -18.64380 -17.55554 -17.34809 -16.97829 -16.53254 -16.46373 -16.04678 -15.77369 -15.66073 -15.24494 -15.14740 -15.11492 -14.51588 -14.25398 -14.10932 -14.09429 -13.75556 -13.58184 -13.26391 -13.16909 -12.98690 -12.94816 -12.90793 -12.49822 -12.29044 -12.12477 -12.08942 -12.02714 -11.89437 -11.77101 -11.68622 -11.35918 -11.14726 -11.11607 -10.90631 -10.56168 -10.43288 -9.73948 -8.70604 -8.20098 -6.30998 -0.86466 -0.44364 -0.13339 0.82839 0.94234 1.01559 1.38964 1.43915 1.45683 1.46747 1.57186 2.44255 2.66471 2.90107 3.11357 3.14881 3.49584 3.63651 3.72733 3.82848 3.94428 4.01019 4.11959 4.30625 4.33595 4.38148 4.42113 4.56747 4.61987 4.68273 4.73351 4.78418 4.89080 4.89957 4.94408 4.97965 5.01019 5.12149 5.26660 5.34125 5.37909 5.43263 5.43837 5.51377 5.77634 6.15797 6.39599 6.47445 6.82176 7.38111 8.91267 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.008289 B = 0.002991 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3377.352656 B = 9360.400038 C =12474.546110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C -0.136 4.136 4 C 0.088 3.912 5 N -0.523 5.523 6 C 0.370 3.630 7 S 0.012 5.988 8 C -0.072 4.072 9 C 0.041 3.959 10 C -0.536 4.536 11 H 0.066 0.934 12 C 0.007 3.993 13 N -0.928 5.928 14 Si 0.963 3.037 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.262 1.262 18 N -0.546 5.546 19 C 0.163 3.837 20 C -0.104 4.104 21 C -0.048 4.048 22 C -0.064 4.064 23 Cl -0.052 7.052 24 C -0.031 4.031 25 C -0.218 4.218 26 C 0.554 3.446 27 O -0.522 6.522 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.023 0.977 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.265 0.735 42 H 0.161 0.839 43 H 0.175 0.825 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.048 18.561 8.647 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.128 4.128 3 C -0.193 4.193 4 C -0.033 4.033 5 N -0.246 5.246 6 C -0.002 4.002 7 S 0.250 5.750 8 C -0.220 4.220 9 C 0.001 3.999 10 C -0.576 4.576 11 H 0.084 0.916 12 C -0.192 4.192 13 N -0.568 5.568 14 Si 0.788 3.212 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.187 1.187 18 N -0.273 5.273 19 C 0.048 3.952 20 C -0.125 4.125 21 C -0.067 4.067 22 C -0.092 4.092 23 Cl -0.023 7.023 24 C -0.051 4.051 25 C -0.225 4.225 26 C 0.347 3.653 27 O -0.398 6.398 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.074 0.926 42 H 0.179 0.821 43 H 0.192 0.808 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.896 18.449 8.589 20.555 hybrid contribution 1.498 0.072 0.084 1.502 sum 4.394 18.521 8.672 20.918 Atomic orbital electron populations 1.21727 0.91544 1.03154 1.03187 1.21497 0.98478 0.96214 0.96645 1.21792 0.99200 0.95861 1.02451 1.22447 0.74959 1.04117 1.01777 1.46483 1.10547 1.17639 1.49924 1.25321 0.93762 0.90276 0.90885 1.85846 1.09346 1.13151 1.66653 1.23703 0.98127 0.96763 1.03434 1.18775 0.95554 0.90666 0.94858 1.21477 0.93624 1.04544 1.37909 0.91589 1.25873 0.97358 0.99869 0.96089 1.70066 1.16468 1.26184 1.44100 0.85470 0.79167 0.78714 0.77871 1.19887 1.20980 1.18652 1.69288 0.99070 1.30749 1.28170 1.19195 0.94950 0.88651 0.92399 1.20811 0.89178 1.01211 1.01258 1.21188 1.02446 0.90131 0.92970 1.20830 0.90225 0.94034 1.04074 1.98379 1.62501 1.56279 1.85190 1.20846 0.90946 0.97908 0.95443 1.20485 0.92717 0.99464 1.09865 1.18299 0.87112 0.82008 0.77910 1.90832 1.75452 1.29246 1.44263 0.91425 0.91133 0.91376 0.90997 0.91471 0.92075 0.95755 0.87420 0.87192 0.89353 0.89339 0.97414 0.97391 0.92610 0.82125 0.80802 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.19 71.98 0.66 -1.45 16 2 C -0.11 -2.20 3.13 -10.79 -0.03 -2.24 16 3 C -0.14 -2.95 7.95 71.98 0.57 -2.38 16 4 C 0.09 1.94 4.46 86.38 0.39 2.33 16 5 N -0.52 -14.24 2.51 -643.29 -1.61 -15.85 16 6 C 0.37 11.00 7.78 179.62 1.40 12.40 16 7 S 0.01 0.38 19.88 -56.49 -1.12 -0.75 16 8 C -0.07 -2.71 4.72 71.98 0.34 -2.37 16 9 C 0.04 1.94 4.98 29.85 0.15 2.09 16 10 C -0.54 -28.20 9.11 25.60 0.23 -27.97 16 11 H 0.07 3.33 7.74 -2.91 -0.02 3.30 16 12 C 0.01 0.38 5.46 84.66 0.46 0.84 16 13 N -0.93 -53.19 13.29 21.45 0.28 -52.91 16 14 Si 0.96 41.86 29.54 68.60 2.03 43.89 16 15 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 18 N -0.55 -16.95 8.98 -188.05 -1.69 -18.64 16 19 C 0.16 4.56 6.63 39.73 0.26 4.82 16 20 C -0.10 -2.30 9.98 22.26 0.22 -2.07 16 21 C -0.05 -0.84 9.73 22.07 0.21 -0.63 16 22 C -0.06 -1.26 6.32 22.36 0.14 -1.12 16 23 Cl -0.05 -0.90 28.93 -2.72 -0.08 -0.98 16 24 C -0.03 -0.74 9.45 22.46 0.21 -0.53 16 25 C -0.22 -6.03 5.90 -19.95 -0.12 -6.14 16 26 C 0.55 16.15 6.21 86.43 0.54 16.68 16 27 O -0.52 -16.11 14.58 -4.46 -0.06 -16.18 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.33 8.01 -2.39 -0.02 1.31 16 34 H 0.02 0.63 6.06 -2.39 -0.01 0.61 16 35 H 0.11 2.27 7.46 -2.39 -0.02 2.25 16 36 H 0.11 2.23 6.46 -2.39 -0.02 2.21 16 37 H 0.09 3.34 8.09 -2.39 -0.02 3.32 16 38 H 0.09 3.33 8.10 -2.40 -0.02 3.32 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 43 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.15 3.33 7.82 -2.91 -0.02 3.31 16 Total: -1.00 -61.41 391.17 4.40 -57.01 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 1.02 Total: 12.14 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 5.64 Total: -7.74 kcal Atomic # 7 Polarization: -84.38 SS G_CDS: -3.02 Total: -87.40 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.06 Total: -16.18 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -1.12 Total: -0.75 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -61.41 4.40 -57.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005449754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.510 kcal (2) G-P(sol) polarization free energy of solvation -61.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds