Wall clock time and date at job start Tue Mar 31 2020 06:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37806 * 120.08122 * 2 1 4 4 C 1.38756 * 120.65858 * 179.97438 * 3 2 1 5 5 C 1.36707 * 120.47000 * 359.97438 * 4 3 2 6 6 C 1.39522 * 119.80262 * 0.02562 * 5 4 3 7 7 C 1.47002 * 133.68904 * 179.97438 * 6 5 4 8 8 C 1.47984 * 126.74882 * 359.96565 * 7 6 5 9 9 C 1.39536 * 120.14260 * 114.76439 * 8 7 6 10 10 C 1.37972 * 119.85709 * 179.76465 * 9 8 7 11 11 C 1.38352 * 120.13958 * 0.50848 * 10 9 8 12 12 C 1.38360 * 120.28588 * 359.75000 * 11 10 9 13 13 C 1.37962 * 120.14308 * 359.97438 * 12 11 10 14 14 C 1.37886 * 106.49382 * 179.97438 * 7 6 5 15 15 C 1.47646 * 125.40212 * 179.97438 * 14 7 6 16 16 C 1.39670 * 120.15123 * 134.75069 * 15 14 7 17 17 C 1.37939 * 119.84023 * 179.72925 * 16 15 14 18 18 C 1.38370 * 120.15395 * 0.57276 * 17 16 15 19 19 C 1.38371 * 120.31075 * 359.69776 * 18 17 16 20 20 C 1.37936 * 120.15328 * 0.02562 * 19 18 17 21 21 N 1.37377 * 109.19603 * 359.97438 * 14 7 6 22 22 C 1.46506 * 124.92066 * 179.97438 * 21 14 7 23 23 C 1.50699 * 109.46928 * 90.00254 * 22 21 14 24 24 H 1.08003 * 119.99963 * 0.02562 * 23 22 21 25 25 C 1.37873 * 119.99865 * 179.97438 * 23 22 21 26 26 N 1.31514 * 120.00518 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99987 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47000 * 60.00482 * 27 25 23 29 29 H 1.48506 * 109.47330 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47185 * 300.00291 * 27 25 23 31 31 C 1.37848 * 110.15788 * 0.24333 * 21 14 7 32 32 H 1.09001 * 109.47115 * 89.99635 * 1 2 3 33 33 H 1.09000 * 109.47290 * 209.99553 * 1 2 3 34 34 H 1.09008 * 109.47124 * 329.99692 * 1 2 3 35 35 H 1.07999 * 119.67434 * 359.97438 * 3 2 1 36 36 H 1.08001 * 119.77033 * 180.02562 * 4 3 2 37 37 H 1.07999 * 120.09869 * 179.97438 * 5 4 3 38 38 H 1.08001 * 120.07378 * 0.02562 * 9 8 7 39 39 H 1.07994 * 119.93139 * 180.27524 * 10 9 8 40 40 H 1.07997 * 119.86143 * 179.76158 * 11 10 9 41 41 H 1.08004 * 119.93138 * 179.97438 * 12 11 10 42 42 H 1.07993 * 120.07612 * 180.02562 * 13 12 11 43 43 H 1.07995 * 120.08101 * 0.02562 * 16 15 14 44 44 H 1.08001 * 119.91916 * 180.30100 * 17 16 15 45 45 H 1.08001 * 119.84452 * 179.72290 * 18 17 16 46 46 H 1.08004 * 119.92362 * 180.02562 * 19 18 17 47 47 H 1.08007 * 120.07442 * 180.02562 * 20 19 18 48 48 H 1.09004 * 109.47073 * 210.00082 * 22 21 14 49 49 H 1.09000 * 109.47212 * 330.00165 * 22 21 14 50 50 H 0.96992 * 120.00316 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1925 0.0000 4 6 3.5852 1.2064 0.0005 5 6 4.2903 0.0352 0.0016 6 6 3.6107 -1.1833 0.0016 7 6 4.0444 -2.5879 0.0021 8 6 5.4386 -3.0840 0.0020 9 6 5.9295 -3.7947 1.0979 10 6 7.2288 -4.2587 1.0896 11 6 8.0477 -4.0116 0.0022 12 6 7.5687 -3.3029 -1.0853 13 6 6.2697 -2.8384 -1.0918 14 6 2.8967 -3.3520 0.0024 15 6 2.8517 -4.8278 0.0024 16 6 1.9806 -5.5031 0.8603 17 6 1.9398 -6.8818 0.8510 18 6 2.7676 -7.5960 0.0029 19 6 3.6370 -6.9336 -0.8457 20 6 3.6843 -5.5551 -0.8510 21 7 1.8017 -2.5224 0.0027 22 6 0.4078 -2.9734 0.0026 23 6 -0.0701 -3.1285 1.4234 24 1 0.5976 -2.9123 2.2443 25 6 -1.3599 -3.5454 1.6752 26 7 -2.1731 -3.8082 0.6756 27 14 -1.9521 -3.7384 3.4363 28 1 -1.8537 -2.4330 4.1375 29 1 -3.3651 -4.1954 3.4363 30 1 -1.1082 -4.7406 4.1353 31 6 2.2045 -1.2041 -0.0028 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3634 0.8900 0.5139 35 1 1.6538 2.1254 -0.0004 36 1 4.1120 2.1493 0.0009 37 1 5.3701 0.0531 0.0016 38 1 5.2925 -3.9848 1.9491 39 1 7.6086 -4.8127 1.9352 40 1 9.0652 -4.3737 0.0020 41 1 8.2131 -3.1130 -1.9310 42 1 5.8968 -2.2857 -1.9414 43 1 1.3372 -4.9470 1.5260 44 1 1.2633 -7.4052 1.5104 45 1 2.7347 -8.6755 0.0029 46 1 4.2800 -7.4973 -1.5054 47 1 4.3630 -5.0393 -1.5142 48 1 -0.2119 -2.2383 -0.5110 49 1 0.3361 -3.9319 -0.5116 50 1 -3.0804 -4.1018 0.8528 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005615536.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:15 Heat of formation + Delta-G solvation = 97.340245 kcal Electronic energy + Delta-G solvation = -32989.882697 eV Core-core repulsion = 29104.276846 eV Total energy + Delta-G solvation = -3885.605851 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.163 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.87561 -38.69068 -38.43957 -36.53067 -34.17373 -32.65099 -31.48558 -31.12017 -30.65351 -30.43462 -29.66662 -27.78945 -26.81433 -25.67754 -23.34090 -22.92361 -22.32304 -22.11560 -21.80949 -20.68649 -20.05582 -18.65321 -16.87607 -16.77822 -16.42089 -15.88424 -15.59664 -15.08657 -14.84535 -14.73723 -14.41056 -14.27524 -14.14997 -13.85580 -13.47789 -13.19301 -13.08717 -12.95272 -12.71736 -12.69182 -12.61653 -12.31460 -12.13947 -12.08870 -12.06679 -11.48294 -11.31035 -11.07675 -10.96336 -10.90595 -10.82877 -10.77737 -10.58069 -10.38945 -10.25442 -10.08246 -9.71978 -8.91583 -8.74967 -8.72900 -8.57893 -8.47971 -8.33446 -7.34310 -6.77039 -6.33941 -4.46235 1.23500 1.56712 1.64004 1.85550 1.90504 2.24646 3.13823 3.17994 3.19669 3.24434 3.66144 4.02720 4.17119 4.31315 4.44673 4.94701 5.02250 5.11503 5.14067 5.18047 5.28225 5.29815 5.35021 5.36930 5.46307 5.54764 5.64688 5.74173 5.78256 5.85413 5.88310 5.97986 5.99776 6.03753 6.20241 6.26170 6.28134 6.32194 6.35948 6.41410 6.52177 6.55131 6.67096 6.70745 6.72504 6.77417 6.83185 6.93976 6.97085 7.02225 7.03372 7.12051 7.17145 7.22896 7.38054 7.40728 7.49829 7.55172 7.77420 7.99382 8.07303 8.61494 9.20501 10.69003 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.007673 B = 0.004768 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3648.445474 B = 5871.382989 C = 8540.644029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.124 4.124 4 C -0.148 4.148 5 C -0.088 4.088 6 C -0.089 4.089 7 C -0.171 4.171 8 C 0.024 3.976 9 C -0.106 4.106 10 C -0.120 4.120 11 C -0.134 4.134 12 C -0.122 4.122 13 C -0.114 4.114 14 C 0.156 3.844 15 C -0.031 4.031 16 C -0.085 4.085 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.133 4.133 20 C -0.091 4.091 21 N -0.436 5.436 22 C 0.225 3.775 23 C -0.542 4.542 24 H 0.065 0.935 25 C 0.073 3.927 26 N -0.882 5.882 27 Si 0.897 3.103 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.273 1.273 31 C 0.107 3.893 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.155 0.845 44 H 0.120 0.880 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.119 0.881 48 H 0.057 0.943 49 H 0.046 0.954 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.134 -0.556 -2.604 13.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.071 4.071 3 C -0.144 4.144 4 C -0.167 4.167 5 C -0.106 4.106 6 C -0.093 4.093 7 C -0.178 4.178 8 C 0.024 3.976 9 C -0.124 4.124 10 C -0.138 4.138 11 C -0.152 4.152 12 C -0.140 4.140 13 C -0.132 4.132 14 C 0.043 3.957 15 C -0.032 4.032 16 C -0.103 4.103 17 C -0.143 4.143 18 C -0.136 4.136 19 C -0.151 4.151 20 C -0.109 4.109 21 N -0.111 5.111 22 C 0.107 3.893 23 C -0.579 4.579 24 H 0.083 0.917 25 C -0.132 4.132 26 N -0.518 5.518 27 Si 0.723 3.277 28 H -0.198 1.198 29 H -0.209 1.209 30 H -0.198 1.198 31 C -0.002 4.002 32 H 0.078 0.922 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.172 0.828 44 H 0.138 0.862 45 H 0.133 0.867 46 H 0.135 0.865 47 H 0.137 0.863 48 H 0.075 0.925 49 H 0.064 0.936 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.522 -0.738 -2.659 12.823 hybrid contribution -0.542 -0.108 0.927 1.079 sum 11.980 -0.846 -1.732 12.134 Atomic orbital electron populations 1.21155 0.91073 1.04788 1.01978 1.18998 0.95805 0.90026 1.02256 1.20555 0.93930 0.96126 1.03792 1.20420 0.93961 0.97170 1.05119 1.20033 0.98646 0.90639 1.01300 1.18825 0.91781 0.92105 1.06621 1.18758 0.90067 0.90403 1.18566 1.18044 0.91088 0.95466 0.93037 1.21319 0.95267 0.97864 0.97941 1.21008 0.94105 1.00294 0.98358 1.21057 0.99439 1.00317 0.94383 1.20994 0.95657 0.99060 0.98336 1.21286 0.93575 1.00341 0.98026 1.18933 0.85683 0.89136 1.01961 1.18084 0.98206 0.88959 0.97918 1.22087 0.96074 0.94557 0.97619 1.21083 0.99320 0.94236 0.99657 1.21172 0.96495 0.99409 0.96539 1.20892 1.00016 0.94034 1.00117 1.21127 0.98146 0.93804 0.97853 1.44766 1.07737 1.02741 1.55903 1.20009 0.73161 0.97197 0.98924 1.21215 0.97823 1.47629 0.91281 0.91650 1.24899 0.96145 0.94436 0.97725 1.69905 1.07125 1.43744 1.31055 0.86558 0.77954 0.79061 0.84108 1.19806 1.20910 1.19797 1.18034 0.92641 0.84951 1.04552 0.92218 0.87590 0.92493 0.86646 0.86995 0.87141 0.86377 0.86579 0.86787 0.86579 0.86290 0.82794 0.86212 0.86670 0.86471 0.86277 0.92508 0.93587 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.75 36.01 0.32 -2.19 16 2 C -0.07 -1.32 5.90 -104.44 -0.62 -1.94 16 3 C -0.12 -2.07 9.67 -39.55 -0.38 -2.45 16 4 C -0.15 -2.31 9.98 -39.94 -0.40 -2.71 16 5 C -0.09 -1.48 10.05 -39.66 -0.40 -1.88 16 6 C -0.09 -1.72 6.34 -104.96 -0.67 -2.39 16 7 C -0.17 -3.20 5.71 -102.48 -0.59 -3.78 16 8 C 0.02 0.39 4.22 -104.93 -0.44 -0.05 16 9 C -0.11 -1.60 9.79 -39.19 -0.38 -1.98 16 10 C -0.12 -1.52 10.03 -39.64 -0.40 -1.92 16 11 C -0.13 -1.56 10.04 -39.49 -0.40 -1.96 16 12 C -0.12 -1.47 10.03 -39.64 -0.40 -1.87 16 13 C -0.11 -1.61 9.79 -39.19 -0.38 -2.00 16 14 C 0.16 3.14 6.42 -81.67 -0.52 2.62 16 15 C -0.03 -0.58 5.24 -104.99 -0.55 -1.13 16 16 C -0.09 -1.65 8.52 -39.16 -0.33 -1.98 16 17 C -0.12 -2.07 10.03 -39.64 -0.40 -2.47 16 18 C -0.12 -1.71 10.04 -39.48 -0.40 -2.10 16 19 C -0.13 -1.92 10.03 -39.64 -0.40 -2.31 16 20 C -0.09 -1.49 9.00 -39.16 -0.35 -1.84 16 21 N -0.44 -9.49 2.78 -111.06 -0.31 -9.80 16 22 C 0.22 5.29 4.24 -5.19 -0.02 5.27 16 23 C -0.54 -13.35 5.94 -34.44 -0.20 -13.55 16 24 H 0.07 1.68 7.81 -52.48 -0.41 1.27 16 25 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 26 N -0.88 -23.06 13.29 55.43 0.74 -22.32 16 27 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 28 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 30 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 31 C 0.11 2.23 6.72 -83.92 -0.56 1.67 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.11 2.32 4.52 -51.93 -0.23 2.09 16 34 H 0.06 0.94 8.09 -51.92 -0.42 0.52 16 35 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.11 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 42 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.15 3.35 5.36 -52.49 -0.28 3.06 16 44 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 45 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 47 H 0.12 1.88 7.43 -52.48 -0.39 1.49 16 48 H 0.06 1.39 5.59 -51.93 -0.29 1.10 16 49 H 0.05 1.16 7.17 -51.93 -0.37 0.79 16 50 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 LS Contribution 409.91 15.07 6.18 6.18 Total: -1.00 -26.63 409.91 -14.00 -40.63 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -6.61 Total: 11.84 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: -8.97 Total: -41.24 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.43 Total: -32.12 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -26.63 -14.00 -40.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005615536.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.971 kcal (2) G-P(sol) polarization free energy of solvation -26.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds